Clone GH16723 Report

Search the DGRC for GH16723

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:167
Well:23
Vector:pOT2
Associated Gene/Transcriptl(3)02640-RA
Protein status:GH16723.pep: gold
Preliminary Size:3600
Sequenced Size:3338

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13587 2003-01-01 Sim4 clustering to Release 3
CG9165 2003-01-01 Sim4 clustering to Release 3
l(3)02640 2008-04-29 Release 5.5 accounting
l(3)02640 2008-08-15 Release 5.9 accounting
CG4692 2008-08-15 Release 5.9 accounting
l(3)02640 2008-12-18 5.12 accounting
CG4692 2008-12-18 5.12 accounting

Clone Sequence Records

GH16723.complete Sequence

3338 bp (3338 high quality bases) assembled on 2005-10-06

GenBank Submission: BT023907

> GH16723.complete
CCGCGGTCACACTTGTCATTCACTTTTCGCTCTTTGCTCGGTCGTAGTAT
CGGCCAGCAGCTAAAAATTTGGAAAGATCGTTCGGGCTGGGATTTTCTGC
TGATTAGTACAAAGCCAACGTGACAATAACTCAAAAATGTGTCTTGAATA
GTGCGTGCATTTACGTTTTCATTCATCTTTTATCGTTCATCCGGGCTCGG
TTTTCTAATCAGCACTCCTCCTTCTTTGGCTGTCAACGTGACCCCGAAAG
CTGTCCTTCTCGCACACACTTTCACTTTGCAACAACAACAGGAACAACGA
ACAAATAACCCAGCATAAACAATTGTTGTGCAACACTTATTAGCAAAACA
TTAGAGCGCCTATAATGTCGGCGCAGGAAAAGGTTATACGCGTTGGATCG
CGAAAGAGCGAGCTCGCTCTGATTCAGACCAAACATGTCATCGGCCGCCT
GCAGAAGCTATATCCCAAGCAGAAATTCGAGATCCACACCATGTCGACAT
TTGGCGATCGTGTGCTGAACGTTTCCCTTCCTAAGATTGGCGAGAAGAGC
CTGTTCACCCGCGACCTCGAGGATGCGCTGCGCAACGGTGGCGTTGACTT
TGTGGTGCACTCCCTCAAGGATCTGCCTACAGCCCTGCCAACAGGAATGG
CCATCGGAGCCGTGCTGGAGCGAGAAGATGCGCGGGACGCCCTCGTTCTG
CGGGAGAACTTCAAGGGCCACACGATAGCCTCGCTTCCAAAGGGCAGCGT
GATTGGAACCTCATCTCTTCGTCGCACAGCCCAGATTCGCAGGATGTATC
CCCATTTGACGGTGTGCGACATCCGTGGAAATCTAAATACTCGACTGGCC
AAGCTGGATGCAGCCGATTCCAAGTTCTCCGGCATCATACTCGCTCAGGC
CGGCTTGGTGAGAATGGGCTGGATGAGTCGTATTAGCCAGGTGCTGGAGC
CGACCGACTTGCTCTATGCTGTTGGCCAAGGAGCCCTGGCCGTGGAGTGT
CGGGCTAATGACGACCAAGTGCTGGCAATGCTGCAGAAACTTATGTGCCT
GAATACAACGTGCCGCATCCTAGCAGAACGAAGCTTCCTGAAGACTTTGG
GAGGGGGTTGCTCCGCCCCCGTGGCTGTTTGGAGCAACTTAAAGGGCGAG
CCCTTGAATGGAAACAGCCAGGAGGTGGGACTATCCCTCACCGGTGCAGT
TTGGAGCCTGGATGGTGCAATAGAGATACGGAACCATCTGGCATGTGCCT
TAAATGAACAAAAATTGGAGGGGGACCAACGGAAACGAGGGGCCCAGGAG
GCCACCAGCCAGTTGCAGGAGGAGACCAGCAGCAGCTGCGATTCTCCCCC
GGCCACGAAGCGTGCCAGAAATGGCAACGACAGTTCGGGTTCGGACTCGA
ATTCCAGCAGTCCGCGCCAGCAAGGCAGCCCTCCAGTGATCTGTGAGGAT
GCGGCTGCTTGCGCAGCTCTCTCCGGTTACACTGTGGATCAGCTCTCGGA
TCTGGCCAGTCACTGCCCAGTGCTGAGTAACAACAATGCTGTGGGACCTA
CCGGAGTTAGTGGTGGTGGCGATGCGGATACCAACAATGTGAACACCACT
CCCCGTCAGTGCCCTCTTCGCTTGGTGGGCGGTCAGGAAGTGATGGGCCA
GTGCCCAGTGCCGCACAATCAGGCAATGGTTCCTGCCAAATGTCCAGTAG
CGCATGCAGACTCTGGGGATTCCTTCAGCGCCAAGAGTGGAAGTGGAGGG
GAATCGGCCACCACTGCTCACTGTCCACTACAGATGCCCGTGGGTCAGGA
CTTCATGGGCGAATGTCCGTACGTTAACAACGATGTGAAGGTATCCTTTG
CCCAAGCTGGAAAGTGTCCAGTGACTGGCGGTGTGGCAGGAGCATCAGCT
TCTATTTTGCCCACGCCACCGAGCAGCAGAGCCAGTAATGCCAGCAGCGC
TGGCGATGAAGTGGATAATGTTGCAACTTCCTCCAAGTGTCCCTTTGCGG
CCATGCATCAGGGCAGCGGTCTTGAGGCGCCGGCTAAGGACAACGGAAAC
GCAGCCACAGCCAAGTGCCCGTTCCTGCAGAAAACGGTCCAAATGTTCGA
CTACGCCGACGAGGAGCAGCCGACGCCGCAGCACTCGGTGCTCATTGAGG
ATGTGGAAAACCTGTTCTGCGGTCTCTACCAGCACGCCTGTCACAGTCGG
GGCATCTACGAGAAGGCCAACCAGCTGGGCAAGACGCTGGCGGAGGACCT
GATCAAGCGCGGCGCCCTCGACGTGATGAAGGTGGCCCAGGCAGAGATTC
ACGGCAAAGTGGCGTCGTCTTGAGCCCGTCATCAATATCATCGTTTACAT
TAAGTAGAAAAGTGTAACTAGACAAAATGTTTTTCATTTCCGCCTCGTTG
TTGAACTCCCGTGGAGAACTCATGCTTCCCCTGATTTAACATCGGTATTG
TATTCAATCCTTCTGCTCTCCCCGGCGAATGCATCGTTAATGGTTGGTTT
CCGCGTAAACGTTATTTTAGTTTTGTTTTTGTTTCGGGAATATGACAAAT
AAATGTATAAGTGAACTCAAAAAAAAAAAAAAAAAAACTCGAGTTTTTTT
TTTTTTTTTTTTCTGAGTCTATGGCAGCATGGATATTCGCAGCCGTTTTA
TTCACTTAAGCAGTTTTCAAAACACAAAAGCCAAATAGATATAGTTTAGT
GGTGATTGCCCGCCTCTCGCACGCCTTGTGGAAAGTGTAGAATCTGTTGC
AGATGCAGGACCACCGGGCAGCGCCGCTTAGTGGTACTTGTAGTTCCTGT
GGTGCTTCAACTTGGTGTAGTTAATCAGATAGAAGAACGTCATGCTGGCG
ACGGTCAGCTGGAAGAAGGGAGCGATCCCGGCGCGCTTTGGGAACACGTA
CTTGTGCTGCCAGCGCCACCAGGCACGGCTCACAGCTCCGGCCACAGCGT
TGGGGGTCTTGTTGCGGCGTCCCAGCCAGGCGCCGATCTCGCCCAGCTTG
ACCTGGCCGAAGGGCACATCGGCTTTGCCGTAGAAGCGAGCGGGGTCGTA
GGGCCCGTGCACCTTGGGGTTGTACTCAGCTGGATAGTCACCGAATGCCA
TCGCGCTGGTTTGGTTGAGATATATTCTTACCGACATGAAGATCACCTCT
GCACTTGTTCTGCTCTTTGCCGGTGTGGCTTTCGCCCAATCTGCGGATCC
GAACACCAACGAAAACAAGAATGTGATCCACATCAATAGTCCCAGCGCCG
CAAAGTAAATGAGCTTTTGATAATTGCAGGCACAGAATTCAATAAAACAT
TTACTTAATTGTTTGCATGTAAAAAAAAAAAAAAAAAA

GH16723.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:27:45
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)02640-RA 2603 l(3)02640-RA 1..2569 1..2569 12830 99.9 Plus
CG4692-RA 779 CG4692-RA 60..578 3130..2612 2595 100 Minus
CG4692-RB 677 CG4692-RB 103..596 3105..2612 2470 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1337125..1338939 755..2569 9000 99.7 Plus
chr2R 21145070 chr2R 20484959..20485371 2612..3024 2035 99.5 Plus
chr3L 24539361 chr3L 1334387..1334798 1..412 2030 99.5 Plus
chr4 1351717 chr4 997407..997774 2981..2609 1405 93 Minus
chr3L 24539361 chr3L 1336794..1337064 486..756 1355 100 Plus
chr3R 27901430 chr3R 21653679..21653868 3320..3131 950 100 Minus
chr2R 21145070 chr2R 20485489..20485596 3023..3130 540 100 Plus
chr3L 24539361 chr3L 1335455..1335529 411..485 375 100 Plus
chr4 1351717 chr4 997325..997409 3105..3021 350 94.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 16:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
sphinx-RA 936 CR34154-RA 528..895 2981..2609 1440 93.2 Minus
sphinx-RB 1280 CR34154-RB 872..1239 2981..2609 1440 93.2 Minus
sphinx-RA 936 CR34154-RA 446..530 3105..3021 335 92.9 Minus
sphinx-RB 1280 CR34154-RB 790..874 3105..3021 335 92.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1337602..1339416 755..2569 9060 99.9 Plus
2R 25286936 2R 24599087..24599499 2612..3024 2065 100 Plus
3L 28110227 3L 1334877..1335288 1..412 2060 100 Plus
4 1348131 4 976898..977265 2981..2609 1420 93.3 Minus
3L 28110227 3L 1337271..1337541 486..756 1355 100 Plus
3R 32079331 3R 25830718..25830909 3322..3131 960 100 Minus
2R 25286936 2R 24599617..24599724 3023..3130 540 100 Plus
3L 28110227 3L 1335942..1336016 411..485 375 100 Plus
4 1348131 4 976816..976900 3105..3021 335 92.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1337602..1339416 755..2569 9060 99.9 Plus
2R 25260384 2R 24600286..24600698 2612..3024 2065 100 Plus
3L 28103327 3L 1334877..1335288 1..412 2060 100 Plus
4 1331231 4 976898..977265 2981..2609 1440 93.2 Minus
3L 28103327 3L 1337271..1337541 486..756 1355 100 Plus
3R 31820162 3R 25571549..25571740 3322..3131 960 100 Minus
2R 25260384 2R 24600816..24600923 3023..3130 540 100 Plus
3L 28103327 3L 1335942..1336016 411..485 375 100 Plus
4 1331231 4 976816..976900 3105..3021 335 92.9 Minus
Blast to na_te.dros performed on 2019-03-16 17:58:47 has no hits.

GH16723.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:59:35 Download gff for GH16723.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1334387..1334798 1..412 99 -> Plus
chr3L 1335457..1335529 413..485 100 -> Plus
chr3L 1336794..1337063 486..755 100 -> Plus
chr3L 1337126..1338939 756..2569 99 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:51:25 Download gff for GH16723.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)02640-RA 1..1959 365..2323 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:49:40 Download gff for GH16723.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)02640-RA 1..1959 365..2323 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:05:36 Download gff for GH16723.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)02640-RA 1..1959 365..2323 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:30:28 Download gff for GH16723.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)02640-RA 1..1959 365..2323 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:25:08 Download gff for GH16723.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)02640-RA 1..1959 365..2323 99   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:55:56 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:51:24 Download gff for GH16723.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)02640-RA 1..2560 1..2560 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:49:40 Download gff for GH16723.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)02640-RA 1..2560 1..2560 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:05:36 Download gff for GH16723.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)02640-RA 1..2556 13..2568 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:30:29 Download gff for GH16723.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)02640-RA 1..2560 1..2560 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:25:08 Download gff for GH16723.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)02640-RA 1..2556 13..2568 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:59:35 Download gff for GH16723.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1334877..1335288 1..412 100 -> Plus
3L 1335944..1336016 413..485 100 -> Plus
3L 1337271..1337540 486..755 100 -> Plus
3L 1337603..1339416 756..2569 99 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:59:35 Download gff for GH16723.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1334877..1335288 1..412 100 -> Plus
3L 1335944..1336016 413..485 100 -> Plus
3L 1337271..1337540 486..755 100 -> Plus
3L 1337603..1339416 756..2569 99 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:59:35 Download gff for GH16723.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1334877..1335288 1..412 100 -> Plus
3L 1335944..1336016 413..485 100 -> Plus
3L 1337271..1337540 486..755 100 -> Plus
3L 1337603..1339416 756..2569 99 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:05:36 Download gff for GH16723.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1334877..1335288 1..412 100 -> Plus
arm_3L 1335944..1336016 413..485 100 -> Plus
arm_3L 1337271..1337540 486..755 100 -> Plus
arm_3L 1337603..1339416 756..2569 99 == Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:08:53 Download gff for GH16723.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1334877..1335288 1..412 100 -> Plus
3L 1335944..1336016 413..485 100 -> Plus
3L 1337271..1337540 486..755 100 -> Plus
3L 1337603..1339416 756..2569 99 == Plus

GH16723.pep Sequence

Translation from 364 to 2322

> GH16723.pep
MSAQEKVIRVGSRKSELALIQTKHVIGRLQKLYPKQKFEIHTMSTFGDRV
LNVSLPKIGEKSLFTRDLEDALRNGGVDFVVHSLKDLPTALPTGMAIGAV
LEREDARDALVLRENFKGHTIASLPKGSVIGTSSLRRTAQIRRMYPHLTV
CDIRGNLNTRLAKLDAADSKFSGIILAQAGLVRMGWMSRISQVLEPTDLL
YAVGQGALAVECRANDDQVLAMLQKLMCLNTTCRILAERSFLKTLGGGCS
APVAVWSNLKGEPLNGNSQEVGLSLTGAVWSLDGAIEIRNHLACALNEQK
LEGDQRKRGAQEATSQLQEETSSSCDSPPATKRARNGNDSSGSDSNSSSP
RQQGSPPVICEDAAACAALSGYTVDQLSDLASHCPVLSNNNAVGPTGVSG
GGDADTNNVNTTPRQCPLRLVGGQEVMGQCPVPHNQAMVPAKCPVAHADS
GDSFSAKSGSGGESATTAHCPLQMPVGQDFMGECPYVNNDVKVSFAQAGK
CPVTGGVAGASASILPTPPSSRASNASSAGDEVDNVATSSKCPFAAMHQG
SGLEAPAKDNGNAATAKCPFLQKTVQMFDYADEEQPTPQHSVLIEDVENL
FCGLYQHACHSRGIYEKANQLGKTLAEDLIKRGALDVMKVAQAEIHGKVA
SS*

GH16723.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24457-PA 648 GF24457-PA 1..648 1..652 2900 87.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14785-PA 650 GG14785-PA 1..650 1..652 3185 94.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15218-PA 612 GH15218-PA 1..535 1..493 1702 66.9 Plus
Dgri\GH15218-PA 612 GH15218-PA 412..612 442..651 644 61.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)02640-PA 652 CG9165-PA 1..652 1..652 3366 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11928-PA 632 GI11928-PA 1..632 1..651 2142 66.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16182-PA 630 GL16182-PA 1..627 1..652 2436 76.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21587-PA 630 GA21587-PA 1..627 1..652 2471 77.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14404-PA 651 GM14404-PA 1..651 1..652 3374 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13613-PA 651 GD13613-PA 1..651 1..652 3410 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12153-PA 618 GJ12153-PA 1..618 1..651 1998 65 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12668-PA 629 GK12668-PA 1..629 1..651 2067 66 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21148-PA 653 GE21148-PA 1..653 1..652 3197 95.3 Plus

GH16723.hyp Sequence

Translation from 364 to 2322

> GH16723.hyp
MSAQEKVIRVGSRKSELALIQTKHVIGRLQKLYPKQKFEIHTMSTFGDRV
LNVSLPKIGEKSLFTRDLEDALRNGGVDFVVHSLKDLPTALPTGMAIGAV
LEREDARDALVLRENFKGHTIASLPKGSVIGTSSLRRTAQIRRMYPHLTV
CDIRGNLNTRLAKLDAADSKFSGIILAQAGLVRMGWMSRISQVLEPTDLL
YAVGQGALAVECRANDDQVLAMLQKLMCLNTTCRILAERSFLKTLGGGCS
APVAVWSNLKGEPLNGNSQEVGLSLTGAVWSLDGAIEIRNHLACALNEQK
LEGDQRKRGAQEATSQLQEETSSSCDSPPATKRARNGNDSSGSDSNSSSP
RQQGSPPVICEDAAACAALSGYTVDQLSDLASHCPVLSNNNAVGPTGVSG
GGDADTNNVNTTPRQCPLRLVGGQEVMGQCPVPHNQAMVPAKCPVAHADS
GDSFSAKSGSGGESATTAHCPLQMPVGQDFMGECPYVNNDVKVSFAQAGK
CPVTGGVAGASASILPTPPSSRASNASSAGDEVDNVATSSKCPFAAMHQG
SGLEAPAKDNGNAATAKCPFLQKTVQMFDYADEEQPTPQHSVLIEDVENL
FCGLYQHACHSRGIYEKANQLGKTLAEDLIKRGALDVMKVAQAEIHGKVA
SS*

GH16723.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)02640-PA 652 CG9165-PA 1..652 1..652 3366 100 Plus