Clone GH16740 Report

Search the DGRC for GH16740

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:167
Well:40
Vector:pOT2
Associated Gene/TranscriptGstT4-RA
Protein status:GH16740.pep: gold
Preliminary Size:1337
Sequenced Size:1253

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1681 2001-01-01 Release 2 assignment
CG1681 2002-05-30 Blastp of sequenced clone
CG1681 2003-01-01 Sim4 clustering to Release 3
CG1681 2008-04-29 Release 5.5 accounting
CG1681 2008-08-15 Release 5.9 accounting
CG1681 2008-12-18 5.12 accounting

Clone Sequence Records

GH16740.complete Sequence

1253 bp (1253 high quality bases) assembled on 2002-05-30

GenBank Submission: AY119530

> GH16740.complete
CCAGCGATACGGTTCCAAAGCGATCTGATCTCAGTTTCGATTTGAATCCC
CCGATCTGGAATTTCGAATTTTGGATTGTACTGCAGTGCATTGAAGTGCC
TACACAACTTTTTTTTTCGCACCCACTCTAGTCACTTGGAGAGAGCACAC
TGTATATAGTTGGAATATATATATATTAGTATATATCAACGAGATGTCGC
AGCCACTCAAGTTCTACTTCGATTTCCTGAACCAATCGAGCCGGGCGCTC
TACATCCTCCTGGAGGCCTCCAAGATCCCCTTCGAGGCCATACCCATATC
GATGCTCAAAGGCGAGCACCTGACTGGCGAGTTCCGGGACAATGTGAACC
GGTTCCGCAAGCTGCCGGCGATCACGGATCACGGCTACCAGCTGTCCGAG
AATGTGGCCATCTTCCGGCATCTGGCACGCGAAAAGTTGGTGCCGGAGCA
CTGGTATCCGCGACGACATCTCGGCCGTAGTCGCATCGATGAGTACCTGG
CCTGGCAGCAGACCAACATGGGTGTGGCCACCACGGAGTATTTCCAGCAA
AAGTGGCTGGTGCCGTATCTGCAAAAGACCCGGCCAGCCGATAATGCGGT
GAATCTCGCCAGCAAGCAGCTGGAGCACACGCTCAACGAGTTCGAACAGC
TATTCCTCAACTCCCGCAAGTTCATGATGGGCGACAACATTTCGTATGCG
GATCTCAGCGCCATCTGCGAAATCGATCAGCCGAAATCCATTGGCTACAA
TGCGTTCCAGAATCGCAACAAGCTGGCGCGTTGGTATGAAACGGTGCGCG
AGGAGCTGGGTCCCCACTACAAGGAGGTGCTGGGCGAGTTCGAGGCCAAG
CTGAAGGGCAGTGGCAGTGGTCAGCAGCAGGGCGTCGCCCAGGCGGTGAA
GCAATAGCTAGGACCGTCCGCCGCCAATATTGTTTAGTTCCCTAAGGCAA
TCGACTATTTAACCAGATTATTTTTTTTTTTTTTGCGCTACAACTATTGC
ATTTTTGTGATTATACTTGCTCTTCCTATCCAATAAGTCTTAGCCTTTCC
ATCACACTTGTTTTAACAATACCATTTGTGTCACGTAATGCTCATCTGTT
TAAACGTACGAGAAAAACTTATAATCTTATATATAAACTTAGTTGTTAAT
TATGTATTTTAATTATTCGTATATAAAGTACGCTTATGTTTGTTTAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA

GH16740.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1681-RA 1377 CG1681-RA 117..1314 1..1198 5990 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 13299682..13300144 735..1195 2250 99.6 Plus
chrX 22417052 chrX 13295577..13295892 1..316 1550 99.4 Plus
chrX 22417052 chrX 13299105..13299395 310..600 1455 100 Plus
chrX 22417052 chrX 13299474..13299610 598..734 685 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:55:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13408863..13409326 735..1198 2320 100 Plus
X 23542271 X 13404774..13405089 1..316 1565 99.7 Plus
X 23542271 X 13408286..13408576 310..600 1455 100 Plus
X 23542271 X 13408655..13408791 598..734 685 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 13416961..13417424 735..1198 2320 100 Plus
X 23527363 X 13412872..13413187 1..316 1565 99.6 Plus
X 23527363 X 13416384..13416674 310..600 1455 100 Plus
X 23527363 X 13416753..13416889 598..734 685 100 Plus
Blast to na_te.dros performed 2019-03-16 07:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 876..979 1028..926 121 58.7 Minus

GH16740.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:56:19 Download gff for GH16740.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 13295577..13295887 1..311 99 -> Plus
chrX 13299107..13299393 312..598 100 -> Plus
chrX 13299475..13299610 599..734 100 -> Plus
chrX 13299682..13300144 735..1195 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:46:12 Download gff for GH16740.complete
Subject Subject Range Query Range Percent Splice Strand
CG1681-RA 1..714 194..907 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:36:49 Download gff for GH16740.complete
Subject Subject Range Query Range Percent Splice Strand
CG1681-RA 1..714 194..907 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:49:46 Download gff for GH16740.complete
Subject Subject Range Query Range Percent Splice Strand
GstT4-RA 1..714 194..907 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:28:28 Download gff for GH16740.complete
Subject Subject Range Query Range Percent Splice Strand
CG1681-RA 1..714 194..907 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:44:45 Download gff for GH16740.complete
Subject Subject Range Query Range Percent Splice Strand
GstT4-RA 1..714 194..907 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:09:03 Download gff for GH16740.complete
Subject Subject Range Query Range Percent Splice Strand
CG1681-RA 19..1106 1..1088 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:36:49 Download gff for GH16740.complete
Subject Subject Range Query Range Percent Splice Strand
CG1681-RA 19..1106 1..1088 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:49:46 Download gff for GH16740.complete
Subject Subject Range Query Range Percent Splice Strand
GstT4-RA 26..1220 1..1195 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:28:28 Download gff for GH16740.complete
Subject Subject Range Query Range Percent Splice Strand
CG1681-RA 19..1106 1..1088 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:44:45 Download gff for GH16740.complete
Subject Subject Range Query Range Percent Splice Strand
GstT4-RA 26..1220 1..1195 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:56:19 Download gff for GH16740.complete
Subject Subject Range Query Range Percent Splice Strand
X 13408656..13408791 599..734 100 -> Plus
X 13408863..13409323 735..1195 100   Plus
X 13404774..13405084 1..311 100 -> Plus
X 13408288..13408574 312..598 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:56:19 Download gff for GH16740.complete
Subject Subject Range Query Range Percent Splice Strand
X 13408656..13408791 599..734 100 -> Plus
X 13408863..13409323 735..1195 100   Plus
X 13404774..13405084 1..311 100 -> Plus
X 13408288..13408574 312..598 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:56:19 Download gff for GH16740.complete
Subject Subject Range Query Range Percent Splice Strand
X 13408656..13408791 599..734 100 -> Plus
X 13408863..13409323 735..1195 100   Plus
X 13404774..13405084 1..311 100 -> Plus
X 13408288..13408574 312..598 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:49:46 Download gff for GH16740.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13298807..13299117 1..311 100 -> Plus
arm_X 13302321..13302607 312..598 100 -> Plus
arm_X 13302689..13302824 599..734 100 -> Plus
arm_X 13302896..13303356 735..1195 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:00:58 Download gff for GH16740.complete
Subject Subject Range Query Range Percent Splice Strand
X 13412872..13413182 1..311 100 -> Plus
X 13416386..13416672 312..598 100 -> Plus
X 13416754..13416889 599..734 100 -> Plus
X 13416961..13417421 735..1195 100   Plus

GH16740.hyp Sequence

Translation from 193 to 906

> GH16740.hyp
MSQPLKFYFDFLNQSSRALYILLEASKIPFEAIPISMLKGEHLTGEFRDN
VNRFRKLPAITDHGYQLSENVAIFRHLAREKLVPEHWYPRRHLGRSRIDE
YLAWQQTNMGVATTEYFQQKWLVPYLQKTRPADNAVNLASKQLEHTLNEF
EQLFLNSRKFMMGDNISYADLSAICEIDQPKSIGYNAFQNRNKLARWYET
VREELGPHYKEVLGEFEAKLKGSGSGQQQGVAQAVKQ*

GH16740.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
GstT4-PA 237 CG1681-PA 1..237 1..237 1245 100 Plus
GstT3-PC 228 CG1702-PC 1..223 1..224 461 36.6 Plus
GstT3-PA 228 CG1702-PA 1..223 1..224 461 36.6 Plus
GstT3-PB 268 CG1702-PB 41..263 1..224 461 36.6 Plus
GstT1-PA 228 CG30000-PA 1..211 1..211 393 39.4 Plus

GH16740.pep Sequence

Translation from 193 to 906

> GH16740.pep
MSQPLKFYFDFLNQSSRALYILLEASKIPFEAIPISMLKGEHLTGEFRDN
VNRFRKLPAITDHGYQLSENVAIFRHLAREKLVPEHWYPRRHLGRSRIDE
YLAWQQTNMGVATTEYFQQKWLVPYLQKTRPADNAVNLASKQLEHTLNEF
EQLFLNSRKFMMGDNISYADLSAICEIDQPKSIGYNAFQNRNKLARWYET
VREELGPHYKEVLGEFEAKLKGSGSGQQQGVAQAVKQ*

GH16740.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22526-PA 235 GF22526-PA 1..235 1..237 1203 94.5 Plus
Dana\GF15963-PA 269 GF15963-PA 42..264 1..224 474 36.6 Plus
Dana\GF12484-PA 228 GF12484-PA 1..211 1..211 399 38.5 Plus
Dana\GF12486-PA 226 GF12486-PA 1..223 1..223 394 39.1 Plus
Dana\GF12485-PA 228 GF12485-PA 1..214 1..214 349 35.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17782-PA 237 GG17782-PA 1..237 1..237 1268 99.2 Plus
Dere\GG19687-PA 268 GG19687-PA 41..263 1..224 464 36.2 Plus
Dere\GG24094-PA 228 GG24094-PA 1..211 1..211 403 39.4 Plus
Dere\GG24095-PA 228 GG24095-PA 1..227 1..227 340 33.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12904-PA 239 GH12904-PA 1..221 1..221 1037 84.2 Plus
Dgri\GH17734-PA 261 GH17734-PA 38..258 5..228 437 34.8 Plus
Dgri\GH22936-PA 228 GH22936-PA 1..211 1..211 410 38.5 Plus
Dgri\GH18970-PA 212 GH18970-PA 1..195 5..211 166 24.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
GstT4-PA 237 CG1681-PA 1..237 1..237 1245 100 Plus
GstT3-PC 228 CG1702-PC 1..223 1..224 461 36.6 Plus
GstT3-PA 228 CG1702-PA 1..223 1..224 461 36.6 Plus
GstT3-PB 268 CG1702-PB 41..263 1..224 461 36.6 Plus
GstT1-PA 228 CG30000-PA 1..211 1..211 393 39.4 Plus
GstT2-PA 228 CG30005-PA 1..223 1..223 344 35.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14608-PA 237 GI14608-PA 3..237 4..237 1091 85.1 Plus
Dmoj\GI15481-PA 269 GI15481-PA 46..264 5..224 440 36.8 Plus
Dmoj\GI18422-PA 226 GI18422-PA 1..215 1..216 370 37.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26999-PA 280 GL26999-PA 1..280 1..237 785 62.1 Plus
Dper\GL15796-PA 269 GL15796-PA 45..264 4..224 453 35.3 Plus
Dper\GL17152-PA 228 GL17152-PA 1..211 1..211 397 38.5 Plus
Dper\GL17151-PA 111 GL17151-PA 1..111 1..112 249 43.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14161-PA 240 GA14161-PA 1..240 1..237 1111 88.8 Plus
Dpse\GA23260-PA 269 GA23260-PA 45..264 4..224 453 35.3 Plus
Dpse\GA15569-PA 228 GA15569-PA 1..211 1..211 395 38.5 Plus
Dpse\GA24982-PA 228 GA24982-PA 1..227 1..227 386 37.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11633-PA 237 GM11633-PA 1..237 1..237 1258 98.3 Plus
Dsec\GM21142-PA 228 GM21142-PA 1..211 1..211 409 39.9 Plus
Dsec\GM21143-PA 228 GM21143-PA 1..227 1..227 361 34.9 Plus
Dsec\GM21879-PA 222 GM21879-PA 15..209 16..220 145 25.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17126-PA 288 GD17126-PA 1..288 1..237 1215 82.3 Plus
Dsim\GD10672-PA 228 GD10672-PA 1..211 1..211 409 39.9 Plus
Dsim\GD17492-PA 249 GD17492-PA 41..244 1..224 409 34.1 Plus
Dsim\GD10673-PA 228 GD10673-PA 1..227 1..227 361 34.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19422-PA 237 GJ19422-PA 1..237 1..237 1089 83.5 Plus
Dvir\GJ19193-PA 270 GJ19193-PA 43..265 1..224 449 36.6 Plus
Dvir\GJ21509-PA 228 GJ21509-PA 1..218 1..219 367 36.2 Plus
Dvir\GJ14446-PA 213 GJ14446-PA 1..195 5..211 164 24.2 Plus
Dvir\GJ22852-PA 214 GJ22852-PA 1..197 5..213 146 23.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25235-PA 236 GK25235-PA 1..221 1..221 1115 91.9 Plus
Dwil\GK19806-PA 293 GK19806-PA 69..288 4..224 458 36.2 Plus
Dwil\GK15954-PA 228 GK15954-PA 1..211 1..211 407 39.4 Plus
Dwil\GK15953-PA 228 GK15953-PA 1..211 1..211 356 38 Plus
Dwil\GK22983-PA 222 GK22983-PA 15..204 16..215 151 26.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17075-PA 234 GE17075-PA 1..234 1..237 1228 97 Plus
Dyak\GE17886-PA 268 GE17886-PA 41..263 1..224 466 36.2 Plus
Dyak\GE19294-PA 228 GE19294-PA 1..211 1..211 408 39.4 Plus
Dyak\GE19295-PA 228 GE19295-PA 1..227 1..227 323 32.8 Plus
Dyak\GE26181-PA 212 GE26181-PA 1..195 5..211 149 21.3 Plus