Clone GH16763 Report

Search the DGRC for GH16763

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:167
Well:63
Vector:pOT2
Associated Gene/TranscriptCG32236-RA
Protein status:GH16763.pep: gold
Preliminary Size:1508
Sequenced Size:1481

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18296 2001-01-01 Release 2 assignment
CG32236 2001-09-19 Blastp of sequenced clone
CG32236 2003-01-01 Sim4 clustering to Release 3
CG32236 2008-04-29 Release 5.5 accounting
CG32236 2008-08-15 Release 5.9 accounting
CG32236 2008-12-18 5.12 accounting

Clone Sequence Records

GH16763.complete Sequence

1481 bp (1481 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058400

> GH16763.complete
ATAAACCCCAGCAATTTGGTGTCTGTGTTTTAGTTTGCTTAACCCAAACA
CAAACACATCGCCACAAATTGCTAAGTCCACAAATTTGCAAGTTAATCTT
GAGCGGAAAGTGTCAATACGTTGCACGGTAATCGCCATTCAAAAACAGAA
TGAATAACCGTGGAGTTGGATTCTCGGAGTTTTTCGTAAAAACCCCAACC
AGTCGGTCCATTCAATTGCGTGCCAAAAAAGTGGCAAAGGAACTGGTGAT
GCAAAATAAGGATGTGCGGGACAAGATATTGAAAAACAAAGTGCTTACCT
ATGCACAATTCCGAAAGATAATGAAATCAGCTGGCAATGTGACGGATCTG
AATCCGATCACCTATAAAAGTATGATTGAAATACGACAATCGCAGATCGA
TCACAGACGTCTCAAGAGTATTAAATCTGCTGGGGATTCGCTTGGATTTC
ATGCTCGCCTTCTCAATCGCAGCCAGTTAGCCGGCGAATTTAACCAAAAG
CAGGAGATTTTCCGAAAAAATATGGAACTCCTTGGACGGATTAACAAGAC
CAATCGACTAAAGGGGGGTGTGGATAGCTTCAATCGCCATTTTCCCGCCC
TTCAGTCGAATCGGAATAAAATCCGTGAGCTGGCAGATCGCTTGAGCCAG
GAGAACAGGCAGCTCGGTTGTCGCCTATCGCAAGTGAAATCCAAAGTGGA
TTCACACAATCCTTGGGTGCCACCCGTCAAGCCACTCGAACAAAAGGCCT
CCGATGAGACGGTCAGTACTTTCTTGCCATATATGCCATCGCCTCGCTTG
GGCAAACGTAGTGCCCAAATCCTGCTGCGACCCATCATATATTTCGATAT
GGCGGTGCGAGAGAATAACCAGTTCATGGGCAGATTACTCCTACAACTCT
ACACGGAACTGAGTCCGGAAGTGGTGCTGGAGTTTGTGCGTATGGCCACC
CACAACGATGTAGGATGCCATCGGTTTGTGCGAATATTCTCCAATCTCTG
GATGGAGGCTGAACTTGTACCGGCTGTTCATGATTCCCTGCACAATCACC
ACAGCGTCAAGTACTCCTTTTTGGATCCCAGCAAGATAACCGGCGTATTA
TCATACCCATGGGACTATCGCCGTCACTTTCCCCAAGGACTTCTCAGCTA
TACCATCAGCTTTAAGCAATCGGTGATTCCGTGGCAGCGGGTCATCTTTG
GACGAGTTTGCGGCGGCCTAAGGGTGCTCCAAAATTGCCACGAATTCGGC
ACCAAAAATGGCAAGACCAAGAAAACCGTGATTGTCACGCGGTGTGGCCT
GCTCTAATGGGAGCCCACATATCGTCCGCCTCATTATGCAACTGCATTAA
CATAAGTCCAACGAACGGATTGCAGGCAAACTGACTAAATTGTAGCACAT
CTTTGTGGCCCAATGCAGCAGAATGTTGTTTTCTCTCACAAAATGCAAAT
AAAATTATGAAGTAAAAAAAAAAAAAAAAAA

GH16763.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG32236-RA 1463 CG32236-RA 1..1463 1..1463 7315 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4665265..4666727 1463..1 7180 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:56:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4665926..4667389 1464..1 7320 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4665926..4667389 1464..1 7320 100 Minus
Blast to na_te.dros performed 2019-03-16 16:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
rooA 7621 rooA ROOA_LTR 7621bp 3293..3329 622..658 113 78.4 Plus

GH16763.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:14:34 Download gff for GH16763.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4665265..4666727 1..1463 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:46:14 Download gff for GH16763.complete
Subject Subject Range Query Range Percent Splice Strand
CG32236-RA 1..1158 150..1307 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:58:37 Download gff for GH16763.complete
Subject Subject Range Query Range Percent Splice Strand
CG32236-RA 1..1158 150..1307 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:05:30 Download gff for GH16763.complete
Subject Subject Range Query Range Percent Splice Strand
CG32236-RA 1..1158 150..1307 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:41:49 Download gff for GH16763.complete
Subject Subject Range Query Range Percent Splice Strand
CG32236-RA 1..1158 150..1307 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:23:27 Download gff for GH16763.complete
Subject Subject Range Query Range Percent Splice Strand
CG32236-RA 1..1158 150..1307 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:13:14 Download gff for GH16763.complete
Subject Subject Range Query Range Percent Splice Strand
CG32236-RA 1..1463 1..1463 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:58:37 Download gff for GH16763.complete
Subject Subject Range Query Range Percent Splice Strand
CG32236-RA 1..1463 1..1463 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:05:30 Download gff for GH16763.complete
Subject Subject Range Query Range Percent Splice Strand
CG32236-RA 1..1463 1..1463 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:41:49 Download gff for GH16763.complete
Subject Subject Range Query Range Percent Splice Strand
CG32236-RA 1..1463 1..1463 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:23:27 Download gff for GH16763.complete
Subject Subject Range Query Range Percent Splice Strand
CG32236-RA 1..1463 1..1463 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:14:34 Download gff for GH16763.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4665927..4667389 1..1463 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:14:34 Download gff for GH16763.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4665927..4667389 1..1463 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:14:34 Download gff for GH16763.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4665927..4667389 1..1463 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:05:30 Download gff for GH16763.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4665927..4667389 1..1463 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:25:01 Download gff for GH16763.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4665927..4667389 1..1463 100   Minus

GH16763.pep Sequence

Translation from 149 to 1306

> GH16763.pep
MNNRGVGFSEFFVKTPTSRSIQLRAKKVAKELVMQNKDVRDKILKNKVLT
YAQFRKIMKSAGNVTDLNPITYKSMIEIRQSQIDHRRLKSIKSAGDSLGF
HARLLNRSQLAGEFNQKQEIFRKNMELLGRINKTNRLKGGVDSFNRHFPA
LQSNRNKIRELADRLSQENRQLGCRLSQVKSKVDSHNPWVPPVKPLEQKA
SDETVSTFLPYMPSPRLGKRSAQILLRPIIYFDMAVRENNQFMGRLLLQL
YTELSPEVVLEFVRMATHNDVGCHRFVRIFSNLWMEAELVPAVHDSLHNH
HSVKYSFLDPSKITGVLSYPWDYRRHFPQGLLSYTISFKQSVIPWQRVIF
GRVCGGLRVLQNCHEFGTKNGKTKKTVIVTRCGLL*

GH16763.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13613-PA 402 GF13613-PA 241..402 225..385 238 35.4 Plus
Dana\GF21208-PA 375 GF21208-PA 205..375 225..385 202 37.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22966-PA 404 GG22966-PA 243..404 225..385 232 35.5 Plus
Dere\GG18786-PA 363 GG18786-PA 53..363 104..385 214 28.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20999-PA 402 GH20999-PA 241..402 225..385 239 34.1 Plus
Dgri\GH22509-PA 158 GH22509-PA 1..158 227..385 212 35 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG32236-PA 385 CG32236-PA 1..385 1..385 2001 100 Plus
CG30350-PA 369 CG30350-PA 48..369 75..385 301 28.3 Plus
CG15767-PA 370 CG15767-PA 79..370 124..385 230 29.3 Plus
CG3492-PA 404 CG3492-PA 243..404 225..385 215 34.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20637-PA 401 GI20637-PA 240..401 225..385 251 36.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20123-PA 403 GL20123-PA 240..403 225..385 238 33.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16775-PB 397 GA16775-PB 3..397 4..385 946 47.6 Plus
Dpse\GA15779-PB 377 GA15779-PB 108..377 122..385 303 33.8 Plus
Dpse\GA17477-PA 403 GA17477-PA 240..403 225..385 238 33.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11860-PA 404 GM11860-PA 243..404 225..385 227 34.9 Plus
Dsec\GM12437-PA 368 GM12437-PA 199..368 225..385 221 36.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10604-PA 369 GD10604-PA 48..369 75..385 297 28.6 Plus
Dsim\GD11858-PA 404 GD11858-PA 243..404 225..385 227 34.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21605-PA 402 GJ21605-PA 241..402 225..385 243 34.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19683-PA 396 GK19683-PA 235..396 225..385 264 37.2 Plus
Dwil\GK25154-PA 353 GK25154-PA 182..353 225..385 183 34.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14405-PA 404 GE14405-PA 243..404 225..385 228 35.5 Plus
Dyak\GE16431-PA 361 GE16431-PA 192..361 225..385 213 36 Plus

GH16763.hyp Sequence

Translation from 149 to 1306

> GH16763.hyp
MNNRGVGFSEFFVKTPTSRSIQLRAKKVAKELVMQNKDVRDKILKNKVLT
YAQFRKIMKSAGNVTDLNPITYKSMIEIRQSQIDHRRLKSIKSAGDSLGF
HARLLNRSQLAGEFNQKQEIFRKNMELLGRINKTNRLKGGVDSFNRHFPA
LQSNRNKIRELADRLSQENRQLGCRLSQVKSKVDSHNPWVPPVKPLEQKA
SDETVSTFLPYMPSPRLGKRSAQILLRPIIYFDMAVRENNQFMGRLLLQL
YTELSPEVVLEFVRMATHNDVGCHRFVRIFSNLWMEAELVPAVHDSLHNH
HSVKYSFLDPSKITGVLSYPWDYRRHFPQGLLSYTISFKQSVIPWQRVIF
GRVCGGLRVLQNCHEFGTKNGKTKKTVIVTRCGLL*

GH16763.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG32236-PA 385 CG32236-PA 1..385 1..385 2001 100 Plus
CG30350-PA 369 CG30350-PA 48..369 75..385 301 28.3 Plus
CG15767-PA 370 CG15767-PA 79..370 124..385 230 29.3 Plus
CG3492-PA 404 CG3492-PA 243..404 225..385 215 34.8 Plus