Clone GH16843 Report

Search the DGRC for GH16843

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:168
Well:43
Vector:pOT2
Associated Gene/TranscriptCG32485-RA
Protein status:GH16843.pep: gold
Preliminary Size:1328
Sequenced Size:1208

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2159 2001-01-01 Release 2 assignment
CG32485 2003-01-01 Sim4 clustering to Release 3
CG32485 2003-02-22 Blastp of sequenced clone
CG32485 2008-04-29 Release 5.5 accounting
CG32485 2008-08-15 Release 5.9 accounting
CG32485 2008-12-18 5.12 accounting

Clone Sequence Records

GH16843.complete Sequence

1208 bp (1208 high quality bases) assembled on 2003-02-22

GenBank Submission: BT010100

> GH16843.complete
CCGGTCACACTGGTCGAAAAAAAAGAAAAAAACAAATCCGTTCCGTTTGT
GAAAAAACATTTCCGAGTAAAAATAAACAGCGCTGCTTGCATTTCACATA
GTGTCAGCACATTCCGATTCCAGTCCGCGACTCTCCAGCACGGAATCCCA
GTCTGCATTCCGGTCAGGAAGCGATTCGTGCTCTACAATATGTCGTCCGA
GGAGCTGGCGCCAATTAACGAGCAGGACTTCAAGGATCTCAAGGAGCGCA
TGAAATTGATTGTGGAGGCGGATCCAAAGCAGTATCACAATGACTTTTCG
CTGCGTCGCTATCTGCGCGCCTTCAAGACCACAGATGACGCATTTCAGGC
CATTCTAAAGACCAACAAGTGGCGTGAGACATACGGCGTGGACAAGCTGT
CCGAGATGGACCGCAGCCAGCTGGACAAGAAGGCGCGCCTGCTGCGCCAC
CGCGACTGCATCGGCCGTCCGGTGATCTACATTCCGGCCAAAAATCACAG
CTCGGAGCGGGACATCGACGAGCTGACGCGCTTCATCGTCTACAATTTGG
AGGAGGCGTGCAAGAAGTGCTTCGAGGAGGTCACCGACCGCCTGTGCATT
GTCTTCGATCTGGCCGAGTTCAGCACCAGCTGCATGGACTATCAGCTAGT
GCAGAATCTCATCTGGCTGCTGGGCAAGCACTTTCCGGAGCGCCTGGGCG
TCTGTCTGATCATCAACTCGCCCGGTCTGTTCTCCACCATTTGGCCGGCC
ATACGTGTACTGTTGGACGACAATACGGCCAAGAAGGTGAAGTTTGTGGC
GGACGAGGCGGAGCTGTGCCAGTACCTCATCCCCGACATCCTGCCAACGG
ACATGTAAGGCTTCCGCCACGAAATCAGCATCCGACGAGGCTTCTGCTAG
GCGTAGACATATCTCCAAAGAGAACCGAAACCAGTACCTAAGTTTGCAAG
GAGGCTTCTGAGAGCTTTTATCCAGTATAGTACTCTATCTGTAAATCGAT
GTGTTTAACAAGTTGATTGTAAAGCGTATTCTATTGGACACCACAACTAT
TAGTACAATGCTAACTATTTTAGATAAAGGTTTATCTTGTATGTGTAGTA
TCTATATACCCGAATTATACTGTATATATGCAAGTGTCTATGTGTACAGC
AAATAAAGTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA

GH16843.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:19:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG32485-RA 1292 CG32485-RA 104..1219 1..1116 5565 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3050383..3051153 346..1116 3735 99 Plus
chr3L 24539361 chr3L 3049730..3050079 1..349 1655 98.9 Plus
chr3L 24539361 chr3L 3051355..3051407 1111..1163 265 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:56:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3051002..3051772 346..1116 3840 99.9 Plus
3L 28110227 3L 3050350..3050698 1..349 1745 100 Plus
3L 28110227 3L 3051973..3052036 1111..1174 320 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3051002..3051772 346..1116 3840 99.8 Plus
3L 28103327 3L 3050350..3050698 1..349 1745 100 Plus
3L 28103327 3L 3051973..3052036 1111..1174 320 100 Plus
Blast to na_te.dros performed on 2019-03-15 23:55:49 has no hits.

GH16843.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:56:58 Download gff for GH16843.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3049730..3050078 1..348 98 -> Plus
chr3L 3050386..3051146 349..1109 99 <- Plus
chr3L 3051350..3051407 1110..1163 93   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:46:15 Download gff for GH16843.complete
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 1..669 190..858 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:49:17 Download gff for GH16843.complete
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 1..669 190..858 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:09:39 Download gff for GH16843.complete
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 1..669 190..858 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:40:38 Download gff for GH16843.complete
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 1..669 190..858 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:51:18 Download gff for GH16843.complete
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 1..669 190..858 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:01:56 Download gff for GH16843.complete
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 22..1130 1..1109 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:49:17 Download gff for GH16843.complete
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 22..1130 1..1109 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:09:39 Download gff for GH16843.complete
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 28..1136 1..1109 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:40:39 Download gff for GH16843.complete
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 22..1130 1..1109 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:51:18 Download gff for GH16843.complete
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 28..1136 1..1109 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:56:58 Download gff for GH16843.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3050350..3050697 1..348 100 -> Plus
3L 3051005..3051765 349..1109 100 <- Plus
3L 3051968..3052025 1110..1163 93   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:56:58 Download gff for GH16843.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3050350..3050697 1..348 100 -> Plus
3L 3051005..3051765 349..1109 100 <- Plus
3L 3051968..3052025 1110..1163 93   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:56:58 Download gff for GH16843.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3050350..3050697 1..348 100 -> Plus
3L 3051005..3051765 349..1109 100 <- Plus
3L 3051968..3052025 1110..1163 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:09:39 Download gff for GH16843.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3050350..3050697 1..348 100 -> Plus
arm_3L 3051005..3051765 349..1109 100 <- Plus
arm_3L 3051968..3052025 1110..1163 93   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:11:04 Download gff for GH16843.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3050350..3050697 1..348 100 -> Plus
3L 3051005..3051765 349..1109 100 <- Plus
3L 3051968..3052025 1110..1163 93   Plus

GH16843.hyp Sequence

Translation from 0 to 857

> GH16843.hyp
PVTLVEKKEKNKSVPFVKKHFRVKINSAACISHSVSTFRFQSATLQHGIP
VCIPVRKRFVLYNMSSEELAPINEQDFKDLKERMKLIVEADPKQYHNDFS
LRRYLRAFKTTDDAFQAILKTNKWRETYGVDKLSEMDRSQLDKKARLLRH
RDCIGRPVIYIPAKNHSSERDIDELTRFIVYNLEEACKKCFEEVTDRLCI
VFDLAEFSTSCMDYQLVQNLIWLLGKHFPERLGVCLIINSPGLFSTIWPA
IRVLLDDNTAKKVKFVADEAELCQYLIPDILPTDM*

GH16843.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG32485-PA 222 CG32485-PA 1..222 64..285 1167 100 Plus

GH16843.pep Sequence

Translation from 189 to 857

> GH16843.pep
MSSEELAPINEQDFKDLKERMKLIVEADPKQYHNDFSLRRYLRAFKTTDD
AFQAILKTNKWRETYGVDKLSEMDRSQLDKKARLLRHRDCIGRPVIYIPA
KNHSSERDIDELTRFIVYNLEEACKKCFEEVTDRLCIVFDLAEFSTSCMD
YQLVQNLIWLLGKHFPERLGVCLIINSPGLFSTIWPAIRVLLDDNTAKKV
KFVADEAELCQYLIPDILPTDM*

GH16843.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24264-PA 223 GF24264-PA 1..223 1..222 1103 92.4 Plus
Dana\GF24005-PA 662 GF24005-PA 48..225 38..216 162 24.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14900-PA 222 GG14900-PA 1..222 1..222 1159 97.3 Plus
Dere\GG15302-PA 497 GG15302-PA 8..222 9..213 162 23.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14569-PA 223 GH14569-PA 1..223 1..222 1090 89.2 Plus
Dgri\GH14689-PA 482 GH14689-PA 48..228 38..219 179 25.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG32485-PA 222 CG32485-PA 1..222 1..222 1167 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13896-PA 223 GI13896-PA 1..223 1..222 1057 87.4 Plus
Dmoj\GI13304-PA 504 GI13304-PA 48..225 38..216 173 24.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20780-PA 223 GL20780-PA 1..223 1..222 1123 94.2 Plus
Dper\GL21079-PA 498 GL21079-PA 48..225 38..216 162 23.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16939-PA 223 GA16939-PA 1..223 1..222 1123 94.2 Plus
Dpse\GA28323-PA 498 GA28323-PA 48..225 38..216 161 23.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14526-PA 222 GM14526-PA 1..222 1..222 1176 99.5 Plus
Dsec\GM14735-PA 497 GM14735-PA 60..225 49..216 175 24.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13723-PA 222 GD13723-PA 1..222 1..222 1176 99.5 Plus
Dsim\GD13914-PA 236 GD13914-PA 4..167 51..216 179 24.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11751-PA 223 GJ11751-PA 1..223 1..222 1082 89.2 Plus
Dvir\GJ12072-PA 487 GJ12072-PA 48..225 38..216 173 24.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:36:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12321-PA 223 GK12321-PA 1..223 1..222 1085 90.6 Plus
Dwil\GK16664-PA 638 GK16664-PA 66..225 55..216 154 23.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:36:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20354-PA 222 GE20354-PA 1..222 1..222 1165 97.7 Plus
Dyak\GE21523-PA 641 GE21523-PA 48..225 38..216 178 25.3 Plus