Clone GH17085 Report

Search the DGRC for GH17085

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:170
Well:85
Vector:pOT2
Associated Gene/TranscriptCG3708-RB
Protein status:GH17085.pep: gold
Preliminary Size:2060
Sequenced Size:2072

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3708 2001-01-01 Release 2 assignment
CG3708 2001-09-19 Blastp of sequenced clone
CG3708 2003-01-01 Sim4 clustering to Release 3
CG3708 2008-04-29 Release 5.5 accounting
CG3708 2008-08-15 Release 5.9 accounting
CG3708 2008-12-18 5.12 accounting

Clone Sequence Records

GH17085.complete Sequence

2072 bp (2072 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058402

> GH17085.complete
CAATATCCACTGGAGGCCATCCGGTGCAGCTGCAATCTGGTGGACTCGGG
TCGATGAGGAAGATTACCGAATCGCTGGTGGAGGAATTGGACCCCCCGTG
AGGATTAGTCGCCCATAAATTAGCATGCGACAGACGAACGGATTAGATTG
GACAGCTACTTCGGTTTTTCTCCCAATAAATAATGGCGATTCGGGCCATC
GGTTTATGGCACCCAAAAGACAACGGGCCCCACTTATCGCTCCGTCGGGC
CAATAAAACCCAAGACCAGGCACCAAGACTGGGCCCAAGTGCCCAGGTGT
CGCAGATAAGAGGCGAGCGGCGGGGCAGATAGCTTCAATCCAACAAAATA
AACCATGCTCGGGATCTGAATGGAGCATTATGCTGCCGTCCGGTTCCGAC
CTGCCGCAATGTCAGCTTATGGTGGGCCGATAAGTGCCGGGCATGACCCT
CCCTTCAGTGTCCAGTCCACAGCCCATATCTGGGCTCATGAGCAGGTAGC
TCCGATAACGCAACCGCCGACAGATATTGGCCACCGATTTGCCCGGAATT
CGGCAAATCATGCACTGTTTCTGGAATTCGCCTTCATTAATTATGCACGT
AACTCTGAAGTGGTATTCCTCGTAGGCGAAATTATTTGTTAGATTACGCA
GTTATTGTAATCAAAAATGCGATTGCTTCTGGGCAAATCCAAGGAATCAT
CAGCCGAATTTTCGTTCCCAGTAGTAGGCCGGTTTCTGTGGAAATCAAGG
AACAGCTTTGATCTAGCATAGTAGTTTCCAAGTGCCCAGTCGCAGAGCTG
GAATATACTTGTAGATTTATATACATATATGTTGCCAAATTTCGAAGTTA
TTGCACCGAATTGCACAATGATTGGGATGGCTGACAGCGCGGAGGGGGTT
ACCCAGGAAGACAGCCACACGGAGTCGAGGGCAGACGGCATCAGCGGGTC
CTTGCGCTCCCTGGGCACATATACCCAGGAGTCCACAGAGCCGGCTTTGA
GTCCGGCGGACCTTCCCGCCCGCAGCCGGAAGGCCTTTCTGCGGCACATG
ATCGGCCAGCTGGCGGAGCCCGTGCAGAACCGCATACGGGCACTGCGGCA
CAATCAGCTGCAACAGGTACGCATTTCGGAGCAGTTCTTCCGGGAAGTCT
ACGAGCTGGAGCGACGTTTCTACGGCCAGAGCTGCGCGCTCTTCGATGCG
AGGCGGGATATTTTGGAGGGTTCGGTGGAGCCACCGATCCAAACGGAGAA
GACCTGGCCCGAGGACCCGCAGGATGCTCTGTACCTGGACTTCGGGAACA
ACGAGGAGCTGCGACAGCTGAGGCAAAAACTGGCTCCGGTTTCGCCGACT
ACGCTGGGTGTTCCACGCTTTTGGCTGACAGTTTTCCAGAACGTGCCCCT
GCTCTCGGAGTTGGTCCAGGATCACGACGAGCCGCTTCTGGAGAGCCTAA
TGGATGTGCGCCTGGCTTACGACCAGGACAGCTACATGGTCATCTTTCAG
TTTCGGCCCAATAGCTTCCTGCACGATTCCTCGCTGCTGCTCACGAAGCG
CTACTTTCTGCAGCACTCGGCGGACCCGGAGTATCCCTTTCTGTTCGAAG
GGCCCGAAATAGTTCGTTGCGAAGGCTGCCACATCCACTGGCGCGATGGC
TCCAATCTCACTCTCCAAACGGTGGAAAGCAGGCGAAGGAACAGAGCACA
CCGAGTCACCAAGGTCATGCCTCGGGAGTCCTTCTTTCGCTTCTTTGCTC
CGCCGCAGGCCTTGGACCTGTCGCTCGCGGATGAAAAGACCAAGCTGATC
CTTGGCAACGATTTCGAAGTGGGCTTCCTGCTACGCACCCAAATCGTCCC
GAAGGCGGTGCTCTTTTACACGGGCGACCTAGTTGACAGCCTGAGCGCGG
CCTCTCCGGACAGTCGCTCCTTGTCCTCGGAGGCGGAACAGGAGCAGGTC
TTGTGAGTGCGACGCGACTAGCTGTTTGCTAAACAAAATTTACAAGTGAA
TGTGGTAATGATTTCTTATTAAATTCTACAGTTCGGCCAAAGCCAGTTCA
TCACAAAAAAAAAAAAAAAAAA

GH17085.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3708-RA 2062 CG3708-RA 3..2059 1..2057 10285 100 Plus
MED22-RA 899 MED22-RA 764..899 2057..1922 680 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 822784..824837 2054..1 10180 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:56:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 928795..930851 2057..1 10285 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 936893..938949 2057..1 10285 100 Minus
Blast to na_te.dros performed on 2019-03-15 12:40:59 has no hits.

GH17085.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:42:02 Download gff for GH17085.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 822784..824837 1..2054 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:46:32 Download gff for GH17085.complete
Subject Subject Range Query Range Percent Splice Strand
CG3708-RA 1..1128 829..1956 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:54:07 Download gff for GH17085.complete
Subject Subject Range Query Range Percent Splice Strand
CG3708-RA 1..1128 829..1956 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:48:17 Download gff for GH17085.complete
Subject Subject Range Query Range Percent Splice Strand
CG3708-RB 1..1089 868..1956 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:23:09 Download gff for GH17085.complete
Subject Subject Range Query Range Percent Splice Strand
CG3708-RA 1..1128 829..1956 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:07:25 Download gff for GH17085.complete
Subject Subject Range Query Range Percent Splice Strand
CG3708-RB 1..1089 868..1956 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:39:30 Download gff for GH17085.complete
Subject Subject Range Query Range Percent Splice Strand
CG3708-RA 3..2056 1..2054 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:54:07 Download gff for GH17085.complete
Subject Subject Range Query Range Percent Splice Strand
CG3708-RA 3..2056 1..2054 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:48:17 Download gff for GH17085.complete
Subject Subject Range Query Range Percent Splice Strand
CG3708-RB 1..1301 754..2054 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:23:09 Download gff for GH17085.complete
Subject Subject Range Query Range Percent Splice Strand
CG3708-RA 3..2056 1..2054 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:07:25 Download gff for GH17085.complete
Subject Subject Range Query Range Percent Splice Strand
CG3708-RB 1..1301 754..2054 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:42:02 Download gff for GH17085.complete
Subject Subject Range Query Range Percent Splice Strand
X 928798..930851 1..2054 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:42:02 Download gff for GH17085.complete
Subject Subject Range Query Range Percent Splice Strand
X 928798..930851 1..2054 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:42:02 Download gff for GH17085.complete
Subject Subject Range Query Range Percent Splice Strand
X 928798..930851 1..2054 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:48:17 Download gff for GH17085.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 822831..824884 1..2054 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:00:16 Download gff for GH17085.complete
Subject Subject Range Query Range Percent Splice Strand
X 936896..938949 1..2054 100   Minus

GH17085.hyp Sequence

Translation from 828 to 1955

> GH17085.hyp
MLPNFEVIAPNCTMIGMADSAEGVTQEDSHTESRADGISGSLRSLGTYTQ
ESTEPALSPADLPARSRKAFLRHMIGQLAEPVQNRIRALRHNQLQQVRIS
EQFFREVYELERRFYGQSCALFDARRDILEGSVEPPIQTEKTWPEDPQDA
LYLDFGNNEELRQLRQKLAPVSPTTLGVPRFWLTVFQNVPLLSELVQDHD
EPLLESLMDVRLAYDQDSYMVIFQFRPNSFLHDSSLLLTKRYFLQHSADP
EYPFLFEGPEIVRCEGCHIHWRDGSNLTLQTVESRRRNRAHRVTKVMPRE
SFFRFFAPPQALDLSLADEKTKLILGNDFEVGFLLRTQIVPKAVLFYTGD
LVDSLSAASPDSRSLSSEAEQEQVL*

GH17085.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3708-PB 362 CG3708-PB 1..362 14..375 1866 100 Plus
Nap1-PC 370 CG5330-PC 30..325 59..353 602 40.9 Plus
Nap1-PB 370 CG5330-PB 30..325 59..353 602 40.9 Plus
Nap1-PA 370 CG5330-PA 30..325 59..353 602 40.9 Plus
mil-PA 283 CG5017-PA 28..274 80..372 302 27.3 Plus

GH17085.pep Sequence

Translation from 828 to 1955

> GH17085.pep
MLPNFEVIAPNCTMIGMADSAEGVTQEDSHTESRADGISGSLRSLGTYTQ
ESTEPALSPADLPARSRKAFLRHMIGQLAEPVQNRIRALRHNQLQQVRIS
EQFFREVYELERRFYGQSCALFDARRDILEGSVEPPIQTEKTWPEDPQDA
LYLDFGNNEELRQLRQKLAPVSPTTLGVPRFWLTVFQNVPLLSELVQDHD
EPLLESLMDVRLAYDQDSYMVIFQFRPNSFLHDSSLLLTKRYFLQHSADP
EYPFLFEGPEIVRCEGCHIHWRDGSNLTLQTVESRRRNRAHRVTKVMPRE
SFFRFFAPPQALDLSLADEKTKLILGNDFEVGFLLRTQIVPKAVLFYTGD
LVDSLSAASPDSRSLSSEAEQEQVL*

GH17085.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22051-PA 365 GF22051-PA 12..364 22..374 1390 76.9 Plus
Dana\GF12054-PA 369 GF12054-PA 30..324 59..352 585 39.3 Plus
Dana\GF16306-PA 291 GF16306-PA 27..259 77..354 277 27.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12732-PA 362 GG12732-PA 1..362 14..375 1750 93.9 Plus
Dere\GG19979-PA 369 GG19979-PA 30..324 59..352 616 41 Plus
Dere\GG11578-PA 289 GG11578-PA 27..270 77..364 320 27.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12416-PA 390 GH12416-PA 52..371 57..373 1123 65.2 Plus
Dgri\GH20189-PA 369 GH20189-PA 30..325 59..352 593 39 Plus
Dgri\GH16575-PA 290 GH16575-PA 35..261 86..359 284 28.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3708-PB 362 CG3708-PB 1..362 14..375 1866 100 Plus
Nap1-PC 370 CG5330-PC 30..325 59..353 602 40.9 Plus
Nap1-PB 370 CG5330-PB 30..325 59..353 602 40.9 Plus
Nap1-PA 370 CG5330-PA 30..325 59..353 602 40.9 Plus
mil-PA 283 CG5017-PA 28..274 80..372 302 27.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\Tes129-PA 390 GI15001-PA 54..373 57..373 1126 65.2 Plus
Dmoj\GI18847-PA 365 GI18847-PA 30..324 59..352 595 40 Plus
Dmoj\GI22030-PA 289 GI22030-PA 6..266 56..364 305 25.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14420-PA 376 GL14420-PA 13..340 26..354 1027 58.9 Plus
Dper\GL10917-PA 372 GL10917-PA 31..325 59..352 606 38.9 Plus
Dper\GL12969-PA 242 GL12969-PA 51..205 181..353 254 33.7 Plus
Dper\GL12968-PA 350 GL12968-PA 21..260 78..359 227 25.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17630-PA 376 GA17630-PA 1..340 14..354 1014 56.9 Plus
Dpse\GA18808-PA 372 GA18808-PA 31..325 59..352 606 38.9 Plus
Dpse\GA23030-PA 288 GA23030-PA 92..255 172..353 242 32.1 Plus
Dpse\GA23025-PA 332 GA23025-PA 21..260 78..359 228 26.1 Plus
Dpse\GA27003-PB 242 GA27003-PB 25..240 74..336 195 24.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19012-PA 362 GM19012-PA 1..362 14..375 1845 96.7 Plus
Dsec\GM15492-PA 370 GM15492-PA 30..324 59..352 611 41.1 Plus
Dsec\GM16360-PA 283 GM16360-PA 12..266 71..364 323 28.2 Plus
Dsec\GM11702-PA 164 GM11702-PA 21..147 223..364 238 35.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24995-PA 370 GD24995-PA 30..324 59..352 612 41.1 Plus
Dsim\GD15341-PA 79 GD15341-PA 1..79 297..375 392 97.5 Plus
Dsim\GD21354-PA 283 GD21354-PA 12..256 71..354 311 28.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15359-PA 399 GJ15359-PA 62..381 57..373 1123 64.6 Plus
Dvir\GJ20453-PA 367 GJ20453-PA 6..324 22..352 606 37.9 Plus
Dvir\GJ10476-PA 288 GJ10476-PA 26..266 76..364 297 26.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10174-PA 360 GK10174-PA 5..344 19..356 1136 62.9 Plus
Dwil\GK15855-PA 369 GK15855-PA 1..324 17..352 616 37.6 Plus
Dwil\GK11772-PA 290 GK11772-PA 30..258 77..353 274 26.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Nap1-PA 371 GE11512-PA 30..324 59..352 618 41.4 Plus
Dyak\GE16558-PA 123 GE16558-PA 1..120 14..130 512 85 Plus
Dyak\GE23767-PA 290 GE23767-PA 28..261 77..354 305 28.1 Plus