Clone GH17088 Report

Search the DGRC for GH17088

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:170
Well:88
Vector:pOT2
Associated Gene/TranscriptCG8952-RA
Protein status:GH17088.pep: gold
Preliminary Size:1075
Sequenced Size:904

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8952 2003-01-01 Sim4 clustering to Release 3
CG8952 2003-01-15 Blastp of sequenced clone
CG8952 2008-04-29 Release 5.5 accounting
CG8952 2008-08-15 Release 5.9 accounting
CG8952 2008-12-18 5.12 accounting

Clone Sequence Records

GH17088.complete Sequence

904 bp (904 high quality bases) assembled on 2003-01-15

GenBank Submission: AY060723

> GH17088.complete
CAAAGACGGAGACAAGACATGGCGCTGAATAGCGAGCGATCCTTGATGCT
AGTCCTATTGGCTGCCATCTCCGTTGTTGGCCAACCCTTTGATCCTGCCA
ACAGTTCACCGATAAAAATAGATAATCGCATAGTGTCCGGTAGCGATGCG
AAATTGGGCCAGTTTCCCTGGCAGGTCATACTGAAGAGAGATGCCTGGGA
TGATCTACTTTGCGGAGGATCGATCATATCGGACACCTGGGTGCTCACGG
CGGCCCATTGTACAAATGGCCTGAGCTCCATCTTCCTGATGTTCGGCACT
GTGGATCTGTTTAACGCGAATGCCCTGAACATGACGTCCAACAATATCAT
AATCCATCCGGACTACAATGACAAATTGAATAACGATGTCTCGCTGATCC
AACTGCCAGAACCACTGACATTCTCGGCCAACATTCAGGCCATACAACTG
GTCGGCCAGTACGGGGACTCGATCGATTATGTGGGCAGCGTGGCCACAAT
CGCTGGATTCGGTTATACGGAAGATGAGTACCTGGACTACTCGGAAACCC
TTTTGTATGCCCAAGTCGAGATCATTGACAATGCGGATTGTGTGGCCATC
TATGGTAAATATGTTGTAGTGGACTCGACCATGTGTGCCAAAGGATTCGA
TGGTAGCGACATGTCCACTTGCACCGGCGACTCTGGCGGTCCTCTCATTC
TGTACAACAAAACCATCCAACAATGGCAACAAATTGGCATCAACTCATTC
GTCGCTGAGGATCAATGCACATACCGGCTACCATCTGGATACGCACGGGT
CTCGTCCTTCCTCGGCTTCATTGCAGACAAAACGGGCATTGCTGTATGAA
ATCGACACGGACACTAATAAAAGCATTTACTAAACCAAAAAAAAAAAAAA
AAAA

GH17088.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8952-RA 1245 CG8952-RA 240..1128 1..889 4445 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15655297..15656062 886..121 3815 99.9 Minus
chrX 22417052 chrX 15656136..15656256 121..1 605 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:56:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15765467..15766235 889..121 3845 100 Minus
X 23542271 X 15766309..15766429 121..1 605 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15773565..15774333 889..121 3845 100 Minus
X 23527363 X 15774407..15774527 121..1 605 100 Minus
Blast to na_te.dros performed 2019-03-16 08:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 7316..7398 150..68 108 61.9 Minus
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 179..261 150..68 108 61.9 Minus

GH17088.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:42:02 Download gff for GH17088.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15655297..15656062 121..886 99 <- Minus
chrX 15656137..15656256 1..120 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:46:34 Download gff for GH17088.complete
Subject Subject Range Query Range Percent Splice Strand
CG8952-RA 1..831 19..849 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:56:36 Download gff for GH17088.complete
Subject Subject Range Query Range Percent Splice Strand
CG8952-RA 1..831 19..849 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:52:28 Download gff for GH17088.complete
Subject Subject Range Query Range Percent Splice Strand
CG8952-RA 1..831 19..849 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:47:30 Download gff for GH17088.complete
Subject Subject Range Query Range Percent Splice Strand
CG8952-RA 1..831 19..849 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:46:11 Download gff for GH17088.complete
Subject Subject Range Query Range Percent Splice Strand
CG8952-RA 1..831 19..849 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:12:25 Download gff for GH17088.complete
Subject Subject Range Query Range Percent Splice Strand
CG8952-RA 1..886 1..886 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:56:36 Download gff for GH17088.complete
Subject Subject Range Query Range Percent Splice Strand
CG8952-RA 17..902 1..886 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:28 Download gff for GH17088.complete
Subject Subject Range Query Range Percent Splice Strand
CG8952-RA 17..902 1..886 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:47:30 Download gff for GH17088.complete
Subject Subject Range Query Range Percent Splice Strand
CG8952-RA 1..886 1..886 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:46:11 Download gff for GH17088.complete
Subject Subject Range Query Range Percent Splice Strand
CG8952-RA 17..902 1..886 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:42:02 Download gff for GH17088.complete
Subject Subject Range Query Range Percent Splice Strand
X 15765470..15766235 121..886 100 <- Minus
X 15766310..15766429 1..120 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:42:02 Download gff for GH17088.complete
Subject Subject Range Query Range Percent Splice Strand
X 15765470..15766235 121..886 100 <- Minus
X 15766310..15766429 1..120 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:42:02 Download gff for GH17088.complete
Subject Subject Range Query Range Percent Splice Strand
X 15765470..15766235 121..886 100 <- Minus
X 15766310..15766429 1..120 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:28 Download gff for GH17088.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15659503..15660268 121..886 100 <- Minus
arm_X 15660343..15660462 1..120 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:18:46 Download gff for GH17088.complete
Subject Subject Range Query Range Percent Splice Strand
X 15774408..15774527 1..120 100   Minus
X 15773568..15774333 121..886 100 <- Minus

GH17088.hyp Sequence

Translation from 0 to 848

> GH17088.hyp
QRRRQDMALNSERSLMLVLLAAISVVGQPFDPANSSPIKIDNRIVSGSDA
KLGQFPWQVILKRDAWDDLLCGGSIISDTWVLTAAHCTNGLSSIFLMFGT
VDLFNANALNMTSNNIIIHPDYNDKLNNDVSLIQLPEPLTFSANIQAIQL
VGQYGDSIDYVGSVATIAGFGYTEDEYLDYSETLLYAQVEIIDNADCVAI
YGKYVVVDSTMCAKGFDGSDMSTCTGDSGGPLILYNKTIQQWQQIGINSF
VAEDQCTYRLPSGYARVSSFLGFIADKTGIAV*

GH17088.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8952-PA 276 CG8952-PA 1..276 7..282 1431 100 Plus
Jon65Aiv-PA 271 CG6467-PA 34..271 40..280 426 40.8 Plus
CG10477-PB 272 CG10477-PB 6..270 18..280 418 37.6 Plus
CG10477-PA 272 CG10477-PA 6..270 18..280 418 37.6 Plus
Jon65Aiii-PA 274 CG6483-PA 36..273 40..281 390 36.7 Plus

GH17088.pep Sequence

Translation from 18 to 848

> GH17088.pep
MALNSERSLMLVLLAAISVVGQPFDPANSSPIKIDNRIVSGSDAKLGQFP
WQVILKRDAWDDLLCGGSIISDTWVLTAAHCTNGLSSIFLMFGTVDLFNA
NALNMTSNNIIIHPDYNDKLNNDVSLIQLPEPLTFSANIQAIQLVGQYGD
SIDYVGSVATIAGFGYTEDEYLDYSETLLYAQVEIIDNADCVAIYGKYVV
VDSTMCAKGFDGSDMSTCTGDSGGPLILYNKTIQQWQQIGINSFVAEDQC
TYRLPSGYARVSSFLGFIADKTGIAV*

GH17088.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11464-PA 281 GF11464-PA 5..280 2..276 881 60.5 Plus
Dana\GF10666-PA 268 GF10666-PA 1..268 9..274 446 37.3 Plus
Dana\GF12374-PA 271 GF12374-PA 32..270 29..275 371 36.1 Plus
Dana\GF12375-PA 270 GF12375-PA 35..269 33..275 355 35.5 Plus
Dana\GF10667-PA 272 GF10667-PA 5..272 9..274 349 33.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19374-PA 276 GG19374-PA 1..276 1..276 1119 74.3 Plus
Dere\GG14093-PA 272 GG14093-PA 6..270 9..274 416 37.2 Plus
Dere\GG14094-PA 272 GG14094-PA 23..270 22..274 403 37.7 Plus
Dere\GG15803-PA 260 GG15803-PA 26..260 35..274 386 37.2 Plus
Dere\GG15307-PA 270 GG15307-PA 34..268 34..272 374 39.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24189-PA 289 GH24189-PA 49..288 37..276 833 64.2 Plus
Dgri\GH23851-PA 173 GH23851-PA 1..172 105..276 569 61.6 Plus
Dgri\GH15022-PA 272 GH15022-PA 34..271 34..275 388 39.4 Plus
Dgri\GH15028-PA 268 GH15028-PA 3..267 10..275 351 34.2 Plus
Dgri\GH23606-PA 220 GH23606-PA 15..219 65..275 347 39 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8952-PA 276 CG8952-PA 1..276 1..276 1431 100 Plus
Jon65Aiv-PA 271 CG6467-PA 34..271 34..274 426 40.8 Plus
CG10477-PB 272 CG10477-PB 6..270 12..274 418 37.6 Plus
CG10477-PA 272 CG10477-PA 6..270 12..274 418 37.6 Plus
Jon65Aiii-PA 274 CG6483-PA 36..273 34..275 390 36.7 Plus
Jon44E-PB 271 CG8579-PB 5..269 9..274 388 36.9 Plus
Jon44E-PA 271 CG8579-PA 5..269 9..274 388 36.9 Plus
Jon25Bii-PB 276 CG8869-PB 5..275 10..275 344 34.4 Plus
Jon25Bii-PA 276 CG8869-PA 5..275 10..275 344 34.4 Plus
CG11529-PA 287 CG11529-PA 22..260 31..273 336 33.2 Plus
yip7-PA 270 CG6457-PA 5..270 9..274 329 34.2 Plus
Jon74E-PC 271 CG6298-PC 28..268 34..274 322 34.3 Plus
CG10472-PA 290 CG10472-PA 46..285 37..274 321 35.2 Plus
Jon99Fi-PA 267 CG18030-PA 8..266 8..275 317 33.6 Plus
Jon99Cii-PA 265 CG31034-PA 7..264 10..275 316 33.8 Plus
Jon99Ciii-PB 265 CG31362-PB 7..264 10..275 316 33.8 Plus
Jon99Ciii-PA 265 CG31362-PA 7..264 10..275 316 33.8 Plus
Jon99Fii-PA 267 CG2229-PA 8..266 8..275 316 33.6 Plus
Jon25Bi-PB 266 CG8867-PB 7..264 9..275 305 33.3 Plus
CG3088-PA 252 CG3088-PA 8..251 9..275 303 32.6 Plus
Jon99Ci-PA 272 CG31039-PA 37..270 34..274 302 36.1 Plus
CG6462-PA 319 CG6462-PA 61..317 22..274 298 30.7 Plus
CG6592-PA 438 CG6592-PA 121..364 36..275 295 31.5 Plus
Jon65Aii-PA 259 CG6580-PA 7..258 9..275 289 30.9 Plus
CG32523-PA 262 CG32523-PA 7..262 8..274 283 31.8 Plus
Jon66Ci-PA 260 CG7118-PA 6..258 8..275 279 31.7 Plus
Jon65Ai-PB 262 CG10475-PB 34..261 34..275 276 33.2 Plus
Jon65Ai-PA 262 CG10475-PA 34..261 34..275 276 33.2 Plus
CG9676-PA 251 CG9676-PA 8..251 11..274 272 31.9 Plus
Jon25Biii-PA 258 CG8871-PA 32..257 33..275 268 32.7 Plus
CG7542-PB 270 CG7542-PB 1..260 10..268 268 30.1 Plus
CG7542-PA 270 CG7542-PA 1..260 10..268 268 30.1 Plus
CG34458-PA 257 CG34458-PA 12..221 12..231 267 36.9 Plus
CG10469-PA 267 CG10469-PA 23..264 37..273 267 31.8 Plus
Jon66Cii-PA 262 CG7170-PA 36..260 34..275 262 33.2 Plus
CG18180-PA 264 CG18180-PA 5..263 10..275 260 31.5 Plus
lint-PB 1674 CG8213-PB 1429..1673 37..274 257 29.7 Plus
lint-PC 1693 CG8213-PC 1448..1692 37..274 257 29.7 Plus
Ser6-PA 259 CG2071-PA 20..253 26..268 256 32.1 Plus
CG18735-PA 364 CG18735-PA 77..315 32..272 254 28.3 Plus
l(2)k05911-PC 639 CG31728-PC 375..634 14..268 254 31.1 Plus
CG8329-PA 259 CG8329-PA 35..257 38..275 253 33.6 Plus
CG18179-PA 268 CG18179-PA 37..267 35..275 252 31.4 Plus
CG6865-PB 285 CG6865-PB 24..277 28..268 252 29.7 Plus
CG31954-PA 277 CG31954-PA 14..277 11..274 250 28.8 Plus
CG3355-PA 314 CG3355-PA 74..306 36..272 248 30.3 Plus
gammaTry-PA 253 CG30028-PA 5..215 11..227 247 31.4 Plus
CG30025-PA 253 CG30025-PA 5..215 11..227 247 31.4 Plus
deltaTry-PA 253 CG12351-PA 5..215 11..227 247 31.4 Plus
CG30031-PA 253 CG30031-PA 5..215 11..227 247 31.4 Plus
CG12951-PA 265 CG12951-PA 1..257 1..268 247 29.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21521-PA 253 GI21521-PA 13..252 37..276 808 60.8 Plus
Dmoj\GI16676-PA 273 GI16676-PA 34..272 34..275 401 37.8 Plus
Dmoj\GI16677-PA 274 GI16677-PA 22..273 21..275 375 38.2 Plus
Dmoj\GI16681-PA 269 GI16681-PA 36..268 34..275 353 36.6 Plus
Dmoj\GI12958-PA 279 GI12958-PA 42..278 34..275 333 35.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25036-PA 263 GL25036-PA 4..262 9..275 407 36.1 Plus
Dper\GL15539-PA 272 GL15539-PA 24..271 23..275 402 39.5 Plus
Dper\GL15538-PA 272 GL15538-PA 35..271 33..275 392 39 Plus
Dper\GL15536-PA 274 GL15536-PA 35..273 34..275 373 37 Plus
Dper\GL17114-PA 272 GL17114-PA 35..271 30..275 371 36.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23594-PA 263 GA23594-PA 4..262 9..275 407 36.1 Plus
Dpse\GA19610-PA 272 GA19610-PA 24..271 23..275 403 39.5 Plus
Dpse\GA21175-PA 272 GA21175-PA 35..271 30..275 374 36.7 Plus
Dpse\GA19618-PA 274 GA19618-PA 35..273 34..275 371 36.6 Plus
Dpse\GA19627-PA 274 GA19627-PA 35..273 33..275 365 35.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22528-PA 276 GM22528-PA 1..276 1..276 1273 87.7 Plus
Dsec\GM13877-PA 272 GM13877-PA 3..270 9..274 426 36.5 Plus
Dsec\GM14741-PA 274 GM14741-PA 24..273 23..275 396 37 Plus
Dsec\GM25336-PA 288 GM25336-PA 36..260 44..273 333 33.1 Plus
Dsec\GM14738-PA 254 GM14738-PA 24..246 23..268 323 35.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15779-PA 276 GD15779-PA 1..276 1..276 1279 87.7 Plus
Dsim\GD13159-PA 272 GD13159-PA 3..270 9..274 422 37.5 Plus
Dsim\GD13922-PA 271 GD13922-PA 5..271 9..274 419 39.1 Plus
Dsim\GD13160-PA 272 GD13160-PA 5..270 9..274 401 36.7 Plus
Dsim\GD13923-PA 274 GD13923-PA 24..273 23..275 395 36.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15994-PA 267 GJ15994-PA 22..266 32..276 842 62.9 Plus
Dvir\GJ12928-PA 274 GJ12928-PA 3..273 9..275 430 37.1 Plus
Dvir\GJ13101-PA 249 GJ13101-PA 7..249 24..274 377 35.7 Plus
Dvir\GJ20009-PA 271 GJ20009-PA 31..269 34..274 360 37.8 Plus
Dvir\GJ12930-PA 274 GJ12930-PA 3..273 9..275 355 34.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19756-PA 271 GK19756-PA 3..270 8..276 841 58.4 Plus
Dwil\GK16888-PA 274 GK16888-PA 34..273 33..275 400 39.7 Plus
Dwil\GK11558-PA 263 GK11558-PA 3..262 10..275 395 38.7 Plus
Dwil\GK11557-PA 266 GK11557-PA 18..265 23..275 393 39.5 Plus
Dwil\GK18044-PA 273 GK18044-PA 31..271 26..274 373 37.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16022-PA 276 GE16022-PA 1..276 1..276 1095 73.2 Plus
Dyak\GE21528-PA 273 GE21528-PA 5..272 9..275 406 37.1 Plus
Dyak\GE19218-PA 271 GE19218-PA 5..270 9..275 385 37 Plus
Dyak\GE21529-PA 274 GE21529-PA 26..273 22..275 380 36 Plus
Dyak\GE21525-PA 272 GE21525-PA 24..271 23..275 375 37.7 Plus