Clone GH17155 Report

Search the DGRC for GH17155

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:171
Well:55
Vector:pOT2
Associated Gene/TranscriptCG5339-RA
Protein status:GH17155.pep: gold
Preliminary Size:1374
Sequenced Size:1239

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5339 2001-01-01 Release 2 assignment
CG5339 2003-01-01 Sim4 clustering to Release 3
CG5339 2003-02-27 Blastp of sequenced clone
CG5339 2008-04-29 Release 5.5 accounting
CG5339 2008-08-15 Release 5.9 accounting
CG5339 2008-12-18 5.12 accounting

Clone Sequence Records

GH17155.complete Sequence

1239 bp (1239 high quality bases) assembled on 2003-02-27

GenBank Submission: AY069153

> GH17155.complete
AAAAATGATGGCACAACTAAGTTAAACACACAGAAGTAGAAAATGTAAAT
AAAAGCACAATTATAGACTATTCTGTTAGCATGGCTGTGTATCGTCCCCG
CGGCACCCTGGCCAGGGTAATCCACGCCAAATTCCACAACGACAACTCTC
TGGAGGACATAGACACTCGGAAGTGGTACTGCCTGAACCACGAGCTGCCG
CCGAGATTCCAGTCCAAGTTCGTGCCGCTCGAGCCGGATGCCACCACCGT
GAGCTGGCTGGAGCGCACCAAGGCGCTTTCGGCAAACATCTGGACCCACT
TGTGGCACGCCCTGGCTCGCTCAATCCTGCAGTTCTTCATGACCCAGACG
GACATCAACGGGTTCCTGAAGCGCGGCTCCATGTTCATACTGTCCGAGGA
ACAGTTTCGCAAGCTGCTAGTAGCAGGCGGCTTTCAGCCTGCCAGCGGTC
AAGAACCTGTCACGTTGCTGGATATCGGAGCCGGGGACGGTGAGATTTCG
CTGCGCGTGGCCAACACCGTTTCCGAGCTGAGCGGAAGTGCCGGGCTGCG
GGTCTTCGCCACCGAGGCCAGTTGGACCATGCGCGATCGGCTGAAGAAGC
TGAACTTCAACGTAATCACCGAGATAGACGGTCTGCAGAACCTGGAATTG
ATTCTGTGCCTCAACGTATTGGACCGCTGCTTCGATTCATTCAAGCTGCT
CGAGGACATTCACCTGGCACTAGCTCCCAATGGTCGAGCAGTTGTGGCCT
TAGTACTTCCCTACATGCACTACGTGGAGACGAATACCTCGCATCTGCCG
CTGCGCCCGCTGCTGGAGAACAACGGGCGACAGGCGTCGTTCGAGGAGGA
GGCGGCCAGGTTTATGGAGCTGCTGGAGAACTGTGGCTACCGCGTGGAGG
CATGGACCAAGGCGCCGTACTTGTGCGAGGGTGATCTCCACCAGTCGTTC
TATTGGTTAATCGATTTAATTGTTGTCATTTCCAAGAAGACATTCTAGAT
CAAAGCTTCCACATCCTAAAAAGAACCCTTCTGAAGTTATTGTAACCGTT
TTCCTCGTAGAGTTAAGTGGCTGCATTGAGAAACTGAGCATTTATACTTA
TTACAAATGTAGGCTATCAACTAGTTAAACAATTTATTCTTAAAGAATTA
CCAAAAATGTAAATGGATAAACAAACATGTTTAAATTAAAGGGCGACATT
CAAAGCCGCGTTCGAAACTGAAAAAAAAAAAAAAAAAAA

GH17155.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5339-RA 1347 CG5339-RA 104..1325 1..1222 6110 100 Plus
CG17658-RA 1879 CG17658-RA 1770..1879 1222..1113 550 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19782936..19783694 1220..462 3780 99.9 Minus
chr2R 21145070 chr2R 19783753..19784041 460..172 1430 99.7 Minus
chr2R 21145070 chr2R 19784095..19784267 173..1 865 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:56:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:04:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23896894..23897657 1222..459 3820 100 Minus
2R 25286936 2R 23897713..23898001 460..172 1445 100 Minus
2R 25286936 2R 23898055..23898227 173..1 865 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23898093..23898856 1222..459 3820 100 Minus
2R 25260384 2R 23898912..23899200 460..172 1445 100 Minus
2R 25260384 2R 23899254..23899426 173..1 865 100 Minus
Blast to na_te.dros performed 2019-03-17 00:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 2193..2265 946..1016 116 65.8 Plus
gypsy12 10218 gypsy12 GYPSY12 10218bp 10075..10147 946..1016 116 65.8 Plus

GH17155.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:04:51 Download gff for GH17155.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19783755..19784039 174..458 99 <- Minus
chr2R 19784095..19784267 1..173 100   Minus
chr2R 19782936..19783697 459..1220 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:46:36 Download gff for GH17155.complete
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 1..918 81..998 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:47:54 Download gff for GH17155.complete
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 1..918 81..998 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:56:29 Download gff for GH17155.complete
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 1..918 81..998 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:39:16 Download gff for GH17155.complete
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 1..918 81..998 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:09:12 Download gff for GH17155.complete
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 1..918 81..998 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:59:57 Download gff for GH17155.complete
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 8..1227 1..1220 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:47:53 Download gff for GH17155.complete
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 8..1227 1..1220 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:56:29 Download gff for GH17155.complete
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 20..1239 1..1220 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:39:16 Download gff for GH17155.complete
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 8..1227 1..1220 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:12 Download gff for GH17155.complete
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 20..1239 1..1220 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:04:51 Download gff for GH17155.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23898055..23898227 1..173 100   Minus
2R 23896896..23897657 459..1220 100 <- Minus
2R 23897715..23897999 174..458 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:04:51 Download gff for GH17155.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23898055..23898227 1..173 100   Minus
2R 23896896..23897657 459..1220 100 <- Minus
2R 23897715..23897999 174..458 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:04:51 Download gff for GH17155.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23898055..23898227 1..173 100   Minus
2R 23896896..23897657 459..1220 100 <- Minus
2R 23897715..23897999 174..458 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:56:29 Download gff for GH17155.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19785578..19785750 1..173 100   Minus
arm_2R 19784419..19785180 459..1220 100 <- Minus
arm_2R 19785238..19785522 174..458 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:09:37 Download gff for GH17155.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23898113..23898874 459..1220 100 <- Minus
2R 23898932..23899216 174..458 100 <- Minus
2R 23899272..23899444 1..173 100   Minus

GH17155.hyp Sequence

Translation from 80 to 997

> GH17155.hyp
MAVYRPRGTLARVIHAKFHNDNSLEDIDTRKWYCLNHELPPRFQSKFVPL
EPDATTVSWLERTKALSANIWTHLWHALARSILQFFMTQTDINGFLKRGS
MFILSEEQFRKLLVAGGFQPASGQEPVTLLDIGAGDGEISLRVANTVSEL
SGSAGLRVFATEASWTMRDRLKKLNFNVITEIDGLQNLELILCLNVLDRC
FDSFKLLEDIHLALAPNGRAVVALVLPYMHYVETNTSHLPLRPLLENNGR
QASFEEEAARFMELLENCGYRVEAWTKAPYLCEGDLHQSFYWLIDLIVVI
SKKTF*

GH17155.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5339-PA 305 CG5339-PA 1..305 1..305 1596 100 Plus

GH17155.pep Sequence

Translation from 80 to 997

> GH17155.pep
MAVYRPRGTLARVIHAKFHNDNSLEDIDTRKWYCLNHELPPRFQSKFVPL
EPDATTVSWLERTKALSANIWTHLWHALARSILQFFMTQTDINGFLKRGS
MFILSEEQFRKLLVAGGFQPASGQEPVTLLDIGAGDGEISLRVANTVSEL
SGSAGLRVFATEASWTMRDRLKKLNFNVITEIDGLQNLELILCLNVLDRC
FDSFKLLEDIHLALAPNGRAVVALVLPYMHYVETNTSHLPLRPLLENNGR
QASFEEEAARFMELLENCGYRVEAWTKAPYLCEGDLHQSFYWLIDLIVVI
SKKTF*

GH17155.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12055-PA 307 GF12055-PA 1..307 1..305 1482 90.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19980-PA 305 GG19980-PA 1..305 1..305 1611 98.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20191-PA 311 GH20191-PA 1..310 1..304 1297 79 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5339-PA 305 CG5339-PA 1..305 1..305 1596 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20718-PA 311 GI20718-PA 1..308 1..303 1331 81.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10919-PA 219 GL10919-PA 1..217 87..303 998 86.8 Plus
Dper\GL10918-PA 78 GL10918-PA 1..50 1..50 154 62 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18814-PA 306 GA18814-PA 1..304 1..303 1396 86.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15495-PA 305 GM15495-PA 1..305 1..305 1610 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24997-PA 305 GD24997-PA 1..305 1..305 1615 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21879-PA 310 GJ21879-PA 1..308 1..304 1270 76.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15857-PA 305 GK15857-PA 3..303 4..303 1347 83.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11513-PA 305 GE11513-PA 1..305 1..305 1621 99 Plus