Clone GH17311 Report

Search the DGRC for GH17311

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:173
Well:11
Vector:pOT2
Associated Gene/TranscriptCG1785-RA
Protein status:GH17311.pep: gold
Preliminary Size:1870
Sequenced Size:1891

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1785 2001-01-01 Release 2 assignment
CG1785 2001-07-04 Blastp of sequenced clone
CG1785 2003-01-01 Sim4 clustering to Release 3
CG1785 2008-04-29 Release 5.5 accounting
CG1785 2008-08-15 Release 5.9 accounting
CG1785 2008-12-18 5.12 accounting

Clone Sequence Records

GH17311.complete Sequence

1891 bp (1891 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051518

> GH17311.complete
GAAAGCCTGTGCAGATTGCACGTGTGCCGCTCAACATTTGTTTTTTGTAC
TTTGATAATTTCCAAATAATCCGGAGAAATGACGGCCGTAGAGCCAGCGA
CAAAGAAGAAGCGCATCTCGAAGAAGAACAAATCGGCATGGCGCAAAACA
GACATCCAGGATGTCGAGCAGTTCCTCGAAGATCAGCGCCAGGAGGAGCG
CGTTGGAACGTTCGCGGATAAACAGGATGAGGATCTGTTCGTTGTGGACT
CCAGCCTCCCGAAGACCAAGGCCACCGTTCTGAGTGTGAAGCAAAAGCGG
AAGCTGAATGCCAAGAAGCCCATGCGCAGTTACCAGGCTTTGGAGAACAC
ATCCAAAGTCCAAGATCCCATTGCCAAGCGCAACCATGTGCGCCAGAAGA
AGAACGGACGTAACATCGAGCTGGAGGTGTGCAATCCAACCAAGCCGCGC
CATCGCCAGGCCAACAGCGATCGAGCTCAGTACTACGTAAAACTGGAACA
GCGTCTGGCCGACAAGAAGAACAAGAAGCTTGATGTCGAGAAGGACATCT
GGCAGGAGGTGGATTTTCGCGACGAGATTCCTGGACTCAAGGACGAGAAG
GGTTGGATCAGTCGCGAACTGGCACTGCACACAGCTGGAAATATTGGCAA
GAAGGTGGTGAAAACTCACGCTAGTCTGCACCACAAAACCACCAAAGCCA
AGAAATTCGAACTCCCGCATCCGGGCATGAGCTACAATCCCGCACCCGAG
GATCATCAGGCGCTTATTGATCAGGTGGTGGAACGCGAGGAGGGCATCAT
TAAGAAGGAACAGCACCTTAAGCGCGTGACCACCAGCATGTTCTCCAAGG
TGACGCCCGAGGAGAGAGATCGTCGTCGCCTAAATGAAATGAGCCAAGGC
ATGGACGAGGAGGAGGGTAGTGAGCTCGATGAGGATGTCCAAACGAATGG
GAAGAAAAAGGAGGACGATGATGAAAAGCCATATCACACAATCAACGCTC
CCGTGGAGAACAAAAAGAAGAGCAAGCAGGCTCGCCGCAACGAGCTCAAG
CAAAAGGAGCTGGCGCGTCAAACAGAGCTCAAGAGGAAGCTCAAGCAACA
GACGGCTGACCTGATACGCATCAAATCGATTCGCCACGAGCTAGACGATG
AGGAGGAGGACCTGAATGATCTAAAGAAGCGCCGCAAGCAGCGCGCCGAG
AAGGCCAAGTTTGAGCCGAAACGCCTGGGGCGTCACAAGTTCGAGGAGCC
AGACCTAGACGTAAATCTGCCCGAGGATATCGCCGGAAATCTGCGCAACG
TGAAGACTGAGAGCAGTCTGCTGAAGGACCGCTTCCACACGCTGCAACGC
AACAATATGTTGCCCACGACAAAGCTCGTCAGCCGCAAGAAGTCCAAGGT
CAAGCGCTTCGAGCGCAACTCCCACAAGGAGCCGGGCGTTAGCTATAATG
ACCTCAAGGAACGGCGCAGGGCGGCCGCCGCTGCAGCCAAGGCTACTGCC
AATATCAAGATATAGTTCAGTTATTAGGTCTCTTTATTTTTAACGGAGCT
TACAACAATATGTACTTTTCTATAGAATTAAAATCCACATTCTTTTTCCC
CCCAAACGAAAAAAATTATGAACTCTAGATCAGGGACTTGCCCTGACTGC
GTCTCTGTTTCGGATTGTTCTTCTTTTTCTTCTTGGACAGCGGAGCTGCC
AGGTCGCCATCCTCACGCGTCTCGATTGGTCCATCCAGTCGCTTTACGCC
ACTGAAACGAAAGAGAGGCAAATACGAAATAAGTTATATTTTTTTTAACT
GAGTGATGTTTATAATAAAACGAAACTGGAGACAAATAAATAAACGTGGT
TATGTATTAAGCACATTATTAAAAAAAAAAAAAAAAAAAAA

GH17311.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1785-RA 1971 CG1785-RA 102..1971 1..1870 9350 100 Plus
l(1)G0020-RA 3408 l(1)G0020-RA 3174..3408 1753..1519 1175 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:11:05
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8608050..8608801 1118..1870 3715 99.9 Plus
chrX 22417052 chrX 8607572..8607988 702..1118 2085 100 Plus
chrX 22417052 chrX 8607188..8607510 380..702 1615 100 Plus
chrX 22417052 chrX 8606688..8606893 1..206 1030 100 Plus
chrX 22417052 chrX 8606958..8607132 206..380 875 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:56:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:11:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8716313..8717073 1118..1878 3805 100 Plus
X 23542271 X 8715835..8716251 702..1118 2085 100 Plus
X 23542271 X 8715451..8715773 380..702 1615 100 Plus
X 23542271 X 8714951..8715156 1..206 1030 100 Plus
X 23542271 X 8715221..8715395 206..380 875 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8724411..8725171 1118..1878 3805 100 Plus
X 23527363 X 8723933..8724349 702..1118 2085 100 Plus
X 23527363 X 8723549..8723871 380..702 1615 100 Plus
X 23527363 X 8723049..8723254 1..206 1030 100 Plus
X 23527363 X 8723319..8723493 206..380 875 100 Plus
Blast to na_te.dros performed on 2019-03-16 00:11:04 has no hits.

GH17311.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:11:50 Download gff for GH17311.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8606959..8607132 207..380 100 -> Plus
chrX 8606688..8606893 1..206 100 -> Plus
chrX 8607189..8607509 381..701 100 -> Plus
chrX 8607572..8607988 702..1118 100 -> Plus
chrX 8608051..8608801 1119..1870 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:46:39 Download gff for GH17311.complete
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 1..1437 79..1515 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:25:59 Download gff for GH17311.complete
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 1..1437 79..1515 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:11:24 Download gff for GH17311.complete
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 1..1437 79..1515 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:59:03 Download gff for GH17311.complete
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 1..1437 79..1515 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:00:24 Download gff for GH17311.complete
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 1..1437 79..1515 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:24:45 Download gff for GH17311.complete
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 1..1870 1..1870 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:25:59 Download gff for GH17311.complete
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 1..1870 1..1870 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:11:24 Download gff for GH17311.complete
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 16..1885 1..1870 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:59:03 Download gff for GH17311.complete
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 1..1870 1..1870 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:00:24 Download gff for GH17311.complete
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 16..1885 1..1870 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:11:50 Download gff for GH17311.complete
Subject Subject Range Query Range Percent Splice Strand
X 8714951..8715156 1..206 100 -> Plus
X 8715222..8715395 207..380 100 -> Plus
X 8715452..8715772 381..701 100 -> Plus
X 8715835..8716251 702..1118 100 -> Plus
X 8716314..8717065 1119..1870 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:11:50 Download gff for GH17311.complete
Subject Subject Range Query Range Percent Splice Strand
X 8714951..8715156 1..206 100 -> Plus
X 8715222..8715395 207..380 100 -> Plus
X 8715452..8715772 381..701 100 -> Plus
X 8715835..8716251 702..1118 100 -> Plus
X 8716314..8717065 1119..1870 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:11:50 Download gff for GH17311.complete
Subject Subject Range Query Range Percent Splice Strand
X 8714951..8715156 1..206 100 -> Plus
X 8715222..8715395 207..380 100 -> Plus
X 8715452..8715772 381..701 100 -> Plus
X 8715835..8716251 702..1118 100 -> Plus
X 8716314..8717065 1119..1870 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:11:24 Download gff for GH17311.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8608984..8609189 1..206 100 -> Plus
arm_X 8609255..8609428 207..380 100 -> Plus
arm_X 8609485..8609805 381..701 100 -> Plus
arm_X 8609868..8610284 702..1118 100 -> Plus
arm_X 8610347..8611098 1119..1870 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:36:53 Download gff for GH17311.complete
Subject Subject Range Query Range Percent Splice Strand
X 8723933..8724349 702..1118 100 -> Plus
X 8723049..8723254 1..206 100 -> Plus
X 8723320..8723493 207..380 100 -> Plus
X 8723550..8723870 381..701 100 -> Plus
X 8724412..8725163 1119..1870 100   Plus

GH17311.pep Sequence

Translation from 78 to 1514

> GH17311.pep
MTAVEPATKKKRISKKNKSAWRKTDIQDVEQFLEDQRQEERVGTFADKQD
EDLFVVDSSLPKTKATVLSVKQKRKLNAKKPMRSYQALENTSKVQDPIAK
RNHVRQKKNGRNIELEVCNPTKPRHRQANSDRAQYYVKLEQRLADKKNKK
LDVEKDIWQEVDFRDEIPGLKDEKGWISRELALHTAGNIGKKVVKTHASL
HHKTTKAKKFELPHPGMSYNPAPEDHQALIDQVVEREEGIIKKEQHLKRV
TTSMFSKVTPEERDRRRLNEMSQGMDEEEGSELDEDVQTNGKKKEDDDEK
PYHTINAPVENKKKSKQARRNELKQKELARQTELKRKLKQQTADLIRIKS
IRHELDDEEEDLNDLKKRRKQRAEKAKFEPKRLGRHKFEEPDLDVNLPED
IAGNLRNVKTESSLLKDRFHTLQRNNMLPTTKLVSRKKSKVKRFERNSHK
EPGVSYNDLKERRRAAAAAAKATANIKI*

GH17311.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19175-PA 468 GF19175-PA 1..453 1..464 1883 81.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18270-PA 478 GG18270-PA 1..478 1..478 2249 94.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12434-PA 482 GH12434-PA 1..466 1..463 1688 70.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1785-PA 478 CG1785-PA 1..478 1..478 2451 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15030-PA 477 GI15030-PA 1..461 1..463 1740 72.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12955-PA 479 GL12955-PA 1..459 1..459 1862 78.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14699-PA 479 GA14699-PA 1..459 1..459 1834 78.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21787-PA 405 GM21787-PA 4..405 31..478 1874 85.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16915-PA 380 GD16915-PA 1..364 1..362 1822 95.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15381-PA 479 GJ15381-PA 1..459 1..459 1711 75.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16101-PA 491 GK16101-PA 1..475 1..463 1724 73.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15801-PA 479 GE15801-PA 1..460 1..459 2205 93.9 Plus

GH17311.hyp Sequence

Translation from 78 to 1514

> GH17311.hyp
MTAVEPATKKKRISKKNKSAWRKTDIQDVEQFLEDQRQEERVGTFADKQD
EDLFVVDSSLPKTKATVLSVKQKRKLNAKKPMRSYQALENTSKVQDPIAK
RNHVRQKKNGRNIELEVCNPTKPRHRQANSDRAQYYVKLEQRLADKKNKK
LDVEKDIWQEVDFRDEIPGLKDEKGWISRELALHTAGNIGKKVVKTHASL
HHKTTKAKKFELPHPGMSYNPAPEDHQALIDQVVEREEGIIKKEQHLKRV
TTSMFSKVTPEERDRRRLNEMSQGMDEEEGSELDEDVQTNGKKKEDDDEK
PYHTINAPVENKKKSKQARRNELKQKELARQTELKRKLKQQTADLIRIKS
IRHELDDEEEDLNDLKKRRKQRAEKAKFEPKRLGRHKFEEPDLDVNLPED
IAGNLRNVKTESSLLKDRFHTLQRNNMLPTTKLVSRKKSKVKRFERNSHK
EPGVSYNDLKERRRAAAAAAKATANIKI*

GH17311.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1785-PA 478 CG1785-PA 1..478 1..478 2451 100 Plus