Clone GH17337 Report

Search the DGRC for GH17337

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:173
Well:37
Vector:pOT2
Associated Gene/TranscriptPfrx-RB
Protein status:GH17337.pep: gold
Preliminary Size:2818
Sequenced Size:3398

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3400 2001-01-01 Release 2 assignment
CG3400 2002-06-12 Blastp of sequenced clone
CG3400 2003-01-01 Sim4 clustering to Release 3
Pfrx 2008-04-29 Release 5.5 accounting
Pfrx 2008-08-15 Release 5.9 accounting
Pfrx 2008-12-18 5.12 accounting

Clone Sequence Records

GH17337.complete Sequence

3398 bp (3398 high quality bases) assembled on 2002-06-12

GenBank Submission: AY122115

> GH17337.complete
CGACGTGTACGGAACTGAACTGAACCGAACTGAATTGATACGCGGTTCGG
CGGATTCGCTTTGTACTTTCGTTTCTTGTGCTGTTCTGTGTGCTGTGCGC
CCCCACATCAATATCGAGTCAAAATCAAGTCAAAATACGAGAATTCGTGT
GTTTTTTCTCTGTTCTTTTTTTTTTAACTATTTTGTTTTTTTTTTTATTA
TTTGCGTACTAAGAAATTAGCGTTGTAGCAAAAGTAATCTGTGATTTTTT
TTTCCGTTCTGTTTTGTTTACCTTTGGCTTGTAACGATTCAAAACAAATA
GCAAATCGCGTGATTAAGTGATAAAGTGGCCAGAAGTCGGTGGTCGGGCG
CTCTGCACACTGCTTGCATTCAGCGCGCGCCTGCACTGCTTGCATTCCAG
GGCAATGGCTCAGTCGACGGCAACGGCGCCGCTCTACGCCGGCTACAAAC
CCCTGATCAGCTCGGTAACCACGGATACGGATCCGGATCCGGATATGGCC
CCCTCCCTGTCAGCAGAAGGAACAGCTGATCAGCCCCAAAAATCACAGAG
AGAAGGCGAAGTGAAAGGAGCATCATCAGAAGCCCAACGAACAAAAGCAA
ACCCAAACCAGATACTTTCAGCCAGCAACAGCAGCTCAATCGACGAGCAA
GACGAGGATCAAGTAGGAACATTGCCATTGCCCCTGCTGTCCATCAATAG
AAGGACACCCACCCTGCTCCCCCGCCCCGTTCCACCATCATCGACCCGAT
TCACATCGTCCTACAACGACGACCTGTGCACGTGCAGCAACTGCGCGTAC
TCCAGTTTCTCATCCTCCTCCTCCTCCGCCTCGTCCACATCCTCGTCATC
CACGAGCGCTACAGCAGCAGGAACAGCATTAGCATCAGCAGCCGCATCCG
CCGTTGCCAAGAAGCTAGCACGCTCCGTGACCGCCACCAGCATCATGGAC
ATGCCGTACAACACCTCGCCGTCGCTACGCGTGCGCACCACCTCGCTGAA
TCAGCTGAAGAAGACCGCCGACCTGGCCATCGAGAATGAGCTGCACGTCT
GTCCGTCGGTGATGTCCGAGGAGCTGCGCAAGCTGCTGCCGCCCACCTCG
GAGACCGTGATGACCAAACCCTTCCCCATCCGGGGCGAACGGACCATTGC
CGACTGTACCACGCCGCATGTGATCGCCATGGTTGGCCTGCCGGCGCGCG
GCAAGACCTTTATCTCCAAGAAGCTAGCGCGCTACCTCAACTGGATCGGA
ATCTCCACGCGTGTTTTCAATCTGGGCGAGTACAGGCGTCATGCAACCAC
AGCATACAAGTCGCACGAGTTCTTCCGCGCCGACAACGAGGAGGCGATGG
CCATCCGCAACCGGTGCGCCAATCAGGCGCTGCACGACTCGTGCGATTGG
CTGCTGAGCGGCCAGGGAAGCATCGCCGTGTTCGATGCTACCAACTCTAC
GCGCGACCGTCGCCAGCTGATCCACGACATTGTCGTGAAGCAGCATGGTT
TCCGCCTGTTCTTCGTCGAGTCCATTTGCGACGATCCGCAGATTATCGAG
CAGAATATTCTGGAGGTAAAGGTCAGCTCACCAGATTACCTTAACATGAA
CACGGAGCTGGTGGTGCGGGACTTCCTGCAGCGCATCGAGCACTACGAAG
AGCGCTACCAGCCCATCGACGAGGTTACCGAGTCGCACCTCAGCTTCATG
AAGGTGTACAACGCCGGCAAGAAGGTGGTCGTCTACAATAACGAGGGTCA
CGTGGAGTCGCGCATTGTCTACTACCTGATGAACATCCACATTACGCCGC
GCACCATCTACCTGACGCGTCACGGCGAGAGCGAGTACAACCTGAGCGGG
CTCATCGGCGGCGACTCGAACCTGAGCGCCCGTGGCCACCAGTATGCCAA
TGCGCTATCCACTTTCATCGCCCAGCAGCAGATCGACGGTCTGCGCGTGT
GGACGTCATGGATGAAGCGTGCCATTCAGACGGTGGCCGATGTGAAGGCG
CCGCAGGAGCGCTGGAAGGCGTTAAACGAGATCGATGCCGGTCATTGCGA
GGAAATGACGTACGAGCAAATCAAGGAGAAGTTCCCCGAGGAATTCAAGG
CTCGCGACGTTAACAAGTTCGCCTATCGCTATCCGCGCGGCGAGAGCTAC
GAGGATCTTGTGGCTCGACTGGAGCCGGTCATCATGGAGCTGGAGCGACA
GGGCAATGTGCTGGTTGTTTCGCACCAGGCGGTGCTGCGCTGCCTCTTTG
CCTACTTCCTGGACAAGTCCGCCGACGAGCTGCCCTACCTGTATGTGCCG
CTGCACACGGTCATCAAGCTGACGCCGGTGGCCTACGGCTGCAAGGTGGA
GCACATCAAGTTGCCCATCGATGCGGTGGACACGCATCGTCCCAAGCCTA
AGATTCCCGGCGACGTCAGTGAGCCAGGACTGGATGGCCTCAGCGGCGAG
CTGGTGGCACCCGATGGCGTCGGCAAGGTGCTCATTGTGGGTGACGATGT
GGCGACGGCCACGAACGGCAATGGCGGGCGCGTCGATGTCCAGGCGCACC
AATGACGGCGTCGCCTGCACCCCGTGCATCCACATCCACCTCCGAAATCC
AAGACAATCTAAGCACGGCTGCTGGAACGGCTACGGCTGCCCCAACCTCC
AAGACACTTGCCCGCCAACCCCGCCCCCCCAAATCCCAGAACAGATCCCG
CACTAATTCTTCCCCCAGCGCATCCCGGACAGCCCAACTGAAACGGACAA
AGACACGGACGTGGTCATGCGAGGGCAACACTGACAACTGCTCCTGCACC
TGCTCCAAGGATGTGGTGGCATCTCTACTTAACGTGGCGTCGAAGGACTG
CGTATGAAATTGTGATTGATCCATTGTGCTGTTTTATTATGTACTTTAAT
GAACGATTAAATATTTTTAAAATTTTCTAGAACATCTATATACTTTGATA
AAAGCAAAATACAGACTTAAACACCTATCTAGATTTACACAATACACACC
TTCTCCTGTAAATGGAGAAGTCCTGGCTTGATTGATTCAATGTGATTAGT
TACCCCTGGCTTCACATGCAGGCGGTTGGCATACCGCATGCTGAGTGCTC
CAGCCACTAAAAACTTGATTGATTCTAACGCTGTATACTTAAATGTGCTC
TAATCTAATTCGTTGTCTATTTTTTATAACCGTTTTGAGCGAATTTTATA
GCTAAGCGAGAGGATAAACTCACGGATTCCATTTGCCAACTCTGTTTAAC
TGAAACCACTTGCCCGACACACTTTTTAGCCTATGTATATGTTGCTTGTA
AATGTATGTGTGGAATAAATATTGTAACTACAATACATAAATACTATTTC
AAATAATCAACAATAAATACAATTTATCAAAAAAAAAAAAAAAAAAAA

GH17337.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
Pfrx-RB 3412 Pfrx-RB 29..3408 1..3382 16830 99.9 Plus
Pfrx.c 3412 Pfrx.c 29..3408 1..3382 16830 99.9 Plus
Pfrx-RG 2958 Pfrx-RG 29..2958 1..2932 14580 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19395301..19398168 511..3378 14310 99.9 Plus
chrX 22417052 chrX 19387172..19387679 1..510 2390 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:56:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19506483..19509354 511..3382 14360 100 Plus
X 23542271 X 19498373..19498880 1..510 2450 99.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19514581..19517452 511..3382 14360 100 Plus
X 23527363 X 19506471..19506978 1..510 2470 99.6 Plus
Blast to na_te.dros performed 2019-03-16 04:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 73..160 3367..3282 146 67.4 Minus
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 1577..1664 3282..3367 137 66.3 Plus
Rt1a 5108 Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). 3220..3254 531..497 121 82.9 Minus

GH17337.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:10:27 Download gff for GH17337.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19387213..19387322 42..151 100 == Plus
chrX 19387372..19387679 204..510 99 -> Plus
chrX 19395301..19398168 511..3378 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:46:08 Download gff for GH17337.complete
Subject Subject Range Query Range Percent Splice Strand
Pfrx-RB 1..2151 405..2555 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:23:24 Download gff for GH17337.complete
Subject Subject Range Query Range Percent Splice Strand
Pfrx-RB 1..2151 405..2555 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:18:59 Download gff for GH17337.complete
Subject Subject Range Query Range Percent Splice Strand
Pfrx-RG 1..2151 405..2555 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:14:06 Download gff for GH17337.complete
Subject Subject Range Query Range Percent Splice Strand
Pfrx-RB 1..2151 405..2555 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:29:10 Download gff for GH17337.complete
Subject Subject Range Query Range Percent Splice Strand
Pfrx-RG 1..2151 405..2555 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:46:08 Download gff for GH17337.complete
Subject Subject Range Query Range Percent Splice Strand
Pfrx-RB 1..3376 1..3378 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:23:24 Download gff for GH17337.complete
Subject Subject Range Query Range Percent Splice Strand
Pfrx-RB 1..3376 1..3378 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:18:59 Download gff for GH17337.complete
Subject Subject Range Query Range Percent Splice Strand
Pfrx-RB 1..3376 1..3378 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:14:06 Download gff for GH17337.complete
Subject Subject Range Query Range Percent Splice Strand
Pfrx-RB 1..3376 1..3378 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:29:10 Download gff for GH17337.complete
Subject Subject Range Query Range Percent Splice Strand
Pfrx-RB 1..3376 1..3378 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:10:27 Download gff for GH17337.complete
Subject Subject Range Query Range Percent Splice Strand
X 19498373..19498880 1..510 99 -> Plus
X 19506483..19509350 511..3378 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:10:27 Download gff for GH17337.complete
Subject Subject Range Query Range Percent Splice Strand
X 19498373..19498880 1..510 99 -> Plus
X 19506483..19509350 511..3378 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:10:27 Download gff for GH17337.complete
Subject Subject Range Query Range Percent Splice Strand
X 19498373..19498880 1..510 99 -> Plus
X 19506483..19509350 511..3378 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:18:59 Download gff for GH17337.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19392406..19392913 1..510 99 -> Plus
arm_X 19400516..19403383 511..3378 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:47:00 Download gff for GH17337.complete
Subject Subject Range Query Range Percent Splice Strand
X 19506471..19506978 1..510 99 -> Plus
X 19514581..19517448 511..3378 100   Plus

GH17337.hyp Sequence

Translation from 404 to 2554

> GH17337.hyp
MAQSTATAPLYAGYKPLISSVTTDTDPDPDMAPSLSAEGTADQPQKSQRE
GEVKGASSEAQRTKANPNQILSASNSSSIDEQDEDQVGTLPLPLLSINRR
TPTLLPRPVPPSSTRFTSSYNDDLCTCSNCAYSSFSSSSSSASSTSSSST
SATAAGTALASAAASAVAKKLARSVTATSIMDMPYNTSPSLRVRTTSLNQ
LKKTADLAIENELHVCPSVMSEELRKLLPPTSETVMTKPFPIRGERTIAD
CTTPHVIAMVGLPARGKTFISKKLARYLNWIGISTRVFNLGEYRRHATTA
YKSHEFFRADNEEAMAIRNRCANQALHDSCDWLLSGQGSIAVFDATNSTR
DRRQLIHDIVVKQHGFRLFFVESICDDPQIIEQNILEVKVSSPDYLNMNT
ELVVRDFLQRIEHYEERYQPIDEVTESHLSFMKVYNAGKKVVVYNNEGHV
ESRIVYYLMNIHITPRTIYLTRHGESEYNLSGLIGGDSNLSARGHQYANA
LSTFIAQQQIDGLRVWTSWMKRAIQTVADVKAPQERWKALNEIDAGHCEE
MTYEQIKEKFPEEFKARDVNKFAYRYPRGESYEDLVARLEPVIMELERQG
NVLVVSHQAVLRCLFAYFLDKSADELPYLYVPLHTVIKLTPVAYGCKVEH
IKLPIDAVDTHRPKPKIPGDVSEPGLDGLSGELVAPDGVGKVLIVGDDVA
TATNGNGGRVDVQAHQ*

GH17337.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:49:26
Subject Length Description Subject Range Query Range Score Percent Strand
Pfrx-PB 716 CG3400-PB 1..716 1..716 3690 100 Plus
Pfrx-PG 716 CG3400-PG 1..716 1..716 3690 100 Plus
Pfrx-PN 715 CG3400-PN 1..715 1..716 3674 99.9 Plus
Pfrx-PM 536 CG3400-PM 1..536 181..716 2805 100 Plus
Pfrx-PL 536 CG3400-PL 1..536 181..716 2805 100 Plus

GH17337.pep Sequence

Translation from 404 to 2554

> GH17337.pep
MAQSTATAPLYAGYKPLISSVTTDTDPDPDMAPSLSAEGTADQPQKSQRE
GEVKGASSEAQRTKANPNQILSASNSSSIDEQDEDQVGTLPLPLLSINRR
TPTLLPRPVPPSSTRFTSSYNDDLCTCSNCAYSSFSSSSSSASSTSSSST
SATAAGTALASAAASAVAKKLARSVTATSIMDMPYNTSPSLRVRTTSLNQ
LKKTADLAIENELHVCPSVMSEELRKLLPPTSETVMTKPFPIRGERTIAD
CTTPHVIAMVGLPARGKTFISKKLARYLNWIGISTRVFNLGEYRRHATTA
YKSHEFFRADNEEAMAIRNRCANQALHDSCDWLLSGQGSIAVFDATNSTR
DRRQLIHDIVVKQHGFRLFFVESICDDPQIIEQNILEVKVSSPDYLNMNT
ELVVRDFLQRIEHYEERYQPIDEVTESHLSFMKVYNAGKKVVVYNNEGHV
ESRIVYYLMNIHITPRTIYLTRHGESEYNLSGLIGGDSNLSARGHQYANA
LSTFIAQQQIDGLRVWTSWMKRAIQTVADVKAPQERWKALNEIDAGHCEE
MTYEQIKEKFPEEFKARDVNKFAYRYPRGESYEDLVARLEPVIMELERQG
NVLVVSHQAVLRCLFAYFLDKSADELPYLYVPLHTVIKLTPVAYGCKVEH
IKLPIDAVDTHRPKPKIPGDVSEPGLDGLSGELVAPDGVGKVLIVGDDVA
TATNGNGGRVDVQAHQ*

GH17337.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20194-PA 729 GF20194-PA 1..729 1..716 2968 79.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19228-PA 679 GG19228-PA 1..679 1..716 3544 92.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17653-PA 533 GH17653-PA 1..533 181..713 2833 96.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
Pfrx-PB 716 CG3400-PB 1..716 1..716 3690 100 Plus
Pfrx-PG 716 CG3400-PG 1..716 1..716 3690 100 Plus
Pfrx-PN 715 CG3400-PN 1..715 1..716 3674 99.9 Plus
Pfrx-PM 536 CG3400-PM 1..536 181..716 2805 100 Plus
Pfrx-PL 536 CG3400-PL 1..536 181..716 2805 100 Plus
Pfrx-PK 536 CG3400-PK 1..536 181..716 2805 100 Plus
Pfrx-PJ 536 CG3400-PJ 1..536 181..716 2805 100 Plus
Pfrx-PI 536 CG3400-PI 1..536 181..716 2805 100 Plus
Pfrx-PA 536 CG3400-PA 1..536 181..716 2805 100 Plus
Pfrx-PF 536 CG3400-PF 1..536 181..716 2805 100 Plus
Pfrx-PE 536 CG3400-PE 1..536 181..716 2805 100 Plus
Pfrx-PD 536 CG3400-PD 1..536 181..716 2805 100 Plus
Pfrx-PH 536 CG3400-PH 1..536 181..716 2805 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16091-PA 537 GI16091-PA 1..534 181..711 2816 96.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:26:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17426-PA 709 GA17426-PA 83..709 83..716 2985 90.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22962-PA 180 GM22962-PA 1..180 537..716 977 100 Plus
Dsec\GM22961-PA 86 GM22961-PA 1..71 1..71 332 91.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15740-PA 726 GJ15740-PA 125..698 126..699 2834 91.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25408-PA 537 GK25408-PA 1..532 181..711 2831 97.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15846-PA 598 GE15846-PA 175..598 293..716 2338 99.3 Plus
Dyak\GE15846-PA 598 GE15846-PA 1..170 1..207 563 77.3 Plus