Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
GH17337.complete Sequence
3398 bp (3398 high quality bases) assembled on 2002-06-12
GenBank Submission: AY122115
> GH17337.complete
CGACGTGTACGGAACTGAACTGAACCGAACTGAATTGATACGCGGTTCGG
CGGATTCGCTTTGTACTTTCGTTTCTTGTGCTGTTCTGTGTGCTGTGCGC
CCCCACATCAATATCGAGTCAAAATCAAGTCAAAATACGAGAATTCGTGT
GTTTTTTCTCTGTTCTTTTTTTTTTAACTATTTTGTTTTTTTTTTTATTA
TTTGCGTACTAAGAAATTAGCGTTGTAGCAAAAGTAATCTGTGATTTTTT
TTTCCGTTCTGTTTTGTTTACCTTTGGCTTGTAACGATTCAAAACAAATA
GCAAATCGCGTGATTAAGTGATAAAGTGGCCAGAAGTCGGTGGTCGGGCG
CTCTGCACACTGCTTGCATTCAGCGCGCGCCTGCACTGCTTGCATTCCAG
GGCAATGGCTCAGTCGACGGCAACGGCGCCGCTCTACGCCGGCTACAAAC
CCCTGATCAGCTCGGTAACCACGGATACGGATCCGGATCCGGATATGGCC
CCCTCCCTGTCAGCAGAAGGAACAGCTGATCAGCCCCAAAAATCACAGAG
AGAAGGCGAAGTGAAAGGAGCATCATCAGAAGCCCAACGAACAAAAGCAA
ACCCAAACCAGATACTTTCAGCCAGCAACAGCAGCTCAATCGACGAGCAA
GACGAGGATCAAGTAGGAACATTGCCATTGCCCCTGCTGTCCATCAATAG
AAGGACACCCACCCTGCTCCCCCGCCCCGTTCCACCATCATCGACCCGAT
TCACATCGTCCTACAACGACGACCTGTGCACGTGCAGCAACTGCGCGTAC
TCCAGTTTCTCATCCTCCTCCTCCTCCGCCTCGTCCACATCCTCGTCATC
CACGAGCGCTACAGCAGCAGGAACAGCATTAGCATCAGCAGCCGCATCCG
CCGTTGCCAAGAAGCTAGCACGCTCCGTGACCGCCACCAGCATCATGGAC
ATGCCGTACAACACCTCGCCGTCGCTACGCGTGCGCACCACCTCGCTGAA
TCAGCTGAAGAAGACCGCCGACCTGGCCATCGAGAATGAGCTGCACGTCT
GTCCGTCGGTGATGTCCGAGGAGCTGCGCAAGCTGCTGCCGCCCACCTCG
GAGACCGTGATGACCAAACCCTTCCCCATCCGGGGCGAACGGACCATTGC
CGACTGTACCACGCCGCATGTGATCGCCATGGTTGGCCTGCCGGCGCGCG
GCAAGACCTTTATCTCCAAGAAGCTAGCGCGCTACCTCAACTGGATCGGA
ATCTCCACGCGTGTTTTCAATCTGGGCGAGTACAGGCGTCATGCAACCAC
AGCATACAAGTCGCACGAGTTCTTCCGCGCCGACAACGAGGAGGCGATGG
CCATCCGCAACCGGTGCGCCAATCAGGCGCTGCACGACTCGTGCGATTGG
CTGCTGAGCGGCCAGGGAAGCATCGCCGTGTTCGATGCTACCAACTCTAC
GCGCGACCGTCGCCAGCTGATCCACGACATTGTCGTGAAGCAGCATGGTT
TCCGCCTGTTCTTCGTCGAGTCCATTTGCGACGATCCGCAGATTATCGAG
CAGAATATTCTGGAGGTAAAGGTCAGCTCACCAGATTACCTTAACATGAA
CACGGAGCTGGTGGTGCGGGACTTCCTGCAGCGCATCGAGCACTACGAAG
AGCGCTACCAGCCCATCGACGAGGTTACCGAGTCGCACCTCAGCTTCATG
AAGGTGTACAACGCCGGCAAGAAGGTGGTCGTCTACAATAACGAGGGTCA
CGTGGAGTCGCGCATTGTCTACTACCTGATGAACATCCACATTACGCCGC
GCACCATCTACCTGACGCGTCACGGCGAGAGCGAGTACAACCTGAGCGGG
CTCATCGGCGGCGACTCGAACCTGAGCGCCCGTGGCCACCAGTATGCCAA
TGCGCTATCCACTTTCATCGCCCAGCAGCAGATCGACGGTCTGCGCGTGT
GGACGTCATGGATGAAGCGTGCCATTCAGACGGTGGCCGATGTGAAGGCG
CCGCAGGAGCGCTGGAAGGCGTTAAACGAGATCGATGCCGGTCATTGCGA
GGAAATGACGTACGAGCAAATCAAGGAGAAGTTCCCCGAGGAATTCAAGG
CTCGCGACGTTAACAAGTTCGCCTATCGCTATCCGCGCGGCGAGAGCTAC
GAGGATCTTGTGGCTCGACTGGAGCCGGTCATCATGGAGCTGGAGCGACA
GGGCAATGTGCTGGTTGTTTCGCACCAGGCGGTGCTGCGCTGCCTCTTTG
CCTACTTCCTGGACAAGTCCGCCGACGAGCTGCCCTACCTGTATGTGCCG
CTGCACACGGTCATCAAGCTGACGCCGGTGGCCTACGGCTGCAAGGTGGA
GCACATCAAGTTGCCCATCGATGCGGTGGACACGCATCGTCCCAAGCCTA
AGATTCCCGGCGACGTCAGTGAGCCAGGACTGGATGGCCTCAGCGGCGAG
CTGGTGGCACCCGATGGCGTCGGCAAGGTGCTCATTGTGGGTGACGATGT
GGCGACGGCCACGAACGGCAATGGCGGGCGCGTCGATGTCCAGGCGCACC
AATGACGGCGTCGCCTGCACCCCGTGCATCCACATCCACCTCCGAAATCC
AAGACAATCTAAGCACGGCTGCTGGAACGGCTACGGCTGCCCCAACCTCC
AAGACACTTGCCCGCCAACCCCGCCCCCCCAAATCCCAGAACAGATCCCG
CACTAATTCTTCCCCCAGCGCATCCCGGACAGCCCAACTGAAACGGACAA
AGACACGGACGTGGTCATGCGAGGGCAACACTGACAACTGCTCCTGCACC
TGCTCCAAGGATGTGGTGGCATCTCTACTTAACGTGGCGTCGAAGGACTG
CGTATGAAATTGTGATTGATCCATTGTGCTGTTTTATTATGTACTTTAAT
GAACGATTAAATATTTTTAAAATTTTCTAGAACATCTATATACTTTGATA
AAAGCAAAATACAGACTTAAACACCTATCTAGATTTACACAATACACACC
TTCTCCTGTAAATGGAGAAGTCCTGGCTTGATTGATTCAATGTGATTAGT
TACCCCTGGCTTCACATGCAGGCGGTTGGCATACCGCATGCTGAGTGCTC
CAGCCACTAAAAACTTGATTGATTCTAACGCTGTATACTTAAATGTGCTC
TAATCTAATTCGTTGTCTATTTTTTATAACCGTTTTGAGCGAATTTTATA
GCTAAGCGAGAGGATAAACTCACGGATTCCATTTGCCAACTCTGTTTAAC
TGAAACCACTTGCCCGACACACTTTTTAGCCTATGTATATGTTGCTTGTA
AATGTATGTGTGGAATAAATATTGTAACTACAATACATAAATACTATTTC
AAATAATCAACAATAAATACAATTTATCAAAAAAAAAAAAAAAAAAAA
GH17337.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 18:48:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pfrx-RB | 3412 | Pfrx-RB | 29..3408 | 1..3382 | 16830 | 99.9 | Plus |
Pfrx.c | 3412 | Pfrx.c | 29..3408 | 1..3382 | 16830 | 99.9 | Plus |
Pfrx-RG | 2958 | Pfrx-RG | 29..2958 | 1..2932 | 14580 | 99.9 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:09:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 19395301..19398168 | 511..3378 | 14310 | 99.9 | Plus |
chrX | 22417052 | chrX | 19387172..19387679 | 1..510 | 2390 | 99.2 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:56:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:09:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19506483..19509354 | 511..3382 | 14360 | 100 | Plus |
X | 23542271 | X | 19498373..19498880 | 1..510 | 2450 | 99.6 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:21:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 19514581..19517452 | 511..3382 | 14360 | 100 | Plus |
X | 23527363 | X | 19506471..19506978 | 1..510 | 2470 | 99.6 | Plus |
Blast to na_te.dros performed 2019-03-16 04:09:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-element | 1736 | S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). | 73..160 | 3367..3282 | 146 | 67.4 | Minus |
S-element | 1736 | S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). | 1577..1664 | 3282..3367 | 137 | 66.3 | Plus |
Rt1a | 5108 | Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). | 3220..3254 | 531..497 | 121 | 82.9 | Minus |
GH17337.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:10:27 Download gff for
GH17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 19387213..19387322 | 42..151 | 100 | == | Plus |
chrX | 19387372..19387679 | 204..510 | 99 | -> | Plus |
chrX | 19395301..19398168 | 511..3378 | 97 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:46:08 Download gff for
GH17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pfrx-RB | 1..2151 | 405..2555 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:23:24 Download gff for
GH17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pfrx-RB | 1..2151 | 405..2555 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:18:59 Download gff for
GH17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pfrx-RG | 1..2151 | 405..2555 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:14:06 Download gff for
GH17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pfrx-RB | 1..2151 | 405..2555 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:29:10 Download gff for
GH17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pfrx-RG | 1..2151 | 405..2555 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:46:08 Download gff for
GH17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pfrx-RB | 1..3376 | 1..3378 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:23:24 Download gff for
GH17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pfrx-RB | 1..3376 | 1..3378 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:18:59 Download gff for
GH17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pfrx-RB | 1..3376 | 1..3378 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:14:06 Download gff for
GH17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pfrx-RB | 1..3376 | 1..3378 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:29:10 Download gff for
GH17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pfrx-RB | 1..3376 | 1..3378 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:10:27 Download gff for
GH17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19498373..19498880 | 1..510 | 99 | -> | Plus |
X | 19506483..19509350 | 511..3378 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:10:27 Download gff for
GH17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19498373..19498880 | 1..510 | 99 | -> | Plus |
X | 19506483..19509350 | 511..3378 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:10:27 Download gff for
GH17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19498373..19498880 | 1..510 | 99 | -> | Plus |
X | 19506483..19509350 | 511..3378 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:18:59 Download gff for
GH17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19392406..19392913 | 1..510 | 99 | -> | Plus |
arm_X | 19400516..19403383 | 511..3378 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:47:00 Download gff for
GH17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19506471..19506978 | 1..510 | 99 | -> | Plus |
X | 19514581..19517448 | 511..3378 | 100 | | Plus |
GH17337.hyp Sequence
Translation from 404 to 2554
> GH17337.hyp
MAQSTATAPLYAGYKPLISSVTTDTDPDPDMAPSLSAEGTADQPQKSQRE
GEVKGASSEAQRTKANPNQILSASNSSSIDEQDEDQVGTLPLPLLSINRR
TPTLLPRPVPPSSTRFTSSYNDDLCTCSNCAYSSFSSSSSSASSTSSSST
SATAAGTALASAAASAVAKKLARSVTATSIMDMPYNTSPSLRVRTTSLNQ
LKKTADLAIENELHVCPSVMSEELRKLLPPTSETVMTKPFPIRGERTIAD
CTTPHVIAMVGLPARGKTFISKKLARYLNWIGISTRVFNLGEYRRHATTA
YKSHEFFRADNEEAMAIRNRCANQALHDSCDWLLSGQGSIAVFDATNSTR
DRRQLIHDIVVKQHGFRLFFVESICDDPQIIEQNILEVKVSSPDYLNMNT
ELVVRDFLQRIEHYEERYQPIDEVTESHLSFMKVYNAGKKVVVYNNEGHV
ESRIVYYLMNIHITPRTIYLTRHGESEYNLSGLIGGDSNLSARGHQYANA
LSTFIAQQQIDGLRVWTSWMKRAIQTVADVKAPQERWKALNEIDAGHCEE
MTYEQIKEKFPEEFKARDVNKFAYRYPRGESYEDLVARLEPVIMELERQG
NVLVVSHQAVLRCLFAYFLDKSADELPYLYVPLHTVIKLTPVAYGCKVEH
IKLPIDAVDTHRPKPKIPGDVSEPGLDGLSGELVAPDGVGKVLIVGDDVA
TATNGNGGRVDVQAHQ*
GH17337.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:49:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pfrx-PB | 716 | CG3400-PB | 1..716 | 1..716 | 3690 | 100 | Plus |
Pfrx-PG | 716 | CG3400-PG | 1..716 | 1..716 | 3690 | 100 | Plus |
Pfrx-PN | 715 | CG3400-PN | 1..715 | 1..716 | 3674 | 99.9 | Plus |
Pfrx-PM | 536 | CG3400-PM | 1..536 | 181..716 | 2805 | 100 | Plus |
Pfrx-PL | 536 | CG3400-PL | 1..536 | 181..716 | 2805 | 100 | Plus |
GH17337.pep Sequence
Translation from 404 to 2554
> GH17337.pep
MAQSTATAPLYAGYKPLISSVTTDTDPDPDMAPSLSAEGTADQPQKSQRE
GEVKGASSEAQRTKANPNQILSASNSSSIDEQDEDQVGTLPLPLLSINRR
TPTLLPRPVPPSSTRFTSSYNDDLCTCSNCAYSSFSSSSSSASSTSSSST
SATAAGTALASAAASAVAKKLARSVTATSIMDMPYNTSPSLRVRTTSLNQ
LKKTADLAIENELHVCPSVMSEELRKLLPPTSETVMTKPFPIRGERTIAD
CTTPHVIAMVGLPARGKTFISKKLARYLNWIGISTRVFNLGEYRRHATTA
YKSHEFFRADNEEAMAIRNRCANQALHDSCDWLLSGQGSIAVFDATNSTR
DRRQLIHDIVVKQHGFRLFFVESICDDPQIIEQNILEVKVSSPDYLNMNT
ELVVRDFLQRIEHYEERYQPIDEVTESHLSFMKVYNAGKKVVVYNNEGHV
ESRIVYYLMNIHITPRTIYLTRHGESEYNLSGLIGGDSNLSARGHQYANA
LSTFIAQQQIDGLRVWTSWMKRAIQTVADVKAPQERWKALNEIDAGHCEE
MTYEQIKEKFPEEFKARDVNKFAYRYPRGESYEDLVARLEPVIMELERQG
NVLVVSHQAVLRCLFAYFLDKSADELPYLYVPLHTVIKLTPVAYGCKVEH
IKLPIDAVDTHRPKPKIPGDVSEPGLDGLSGELVAPDGVGKVLIVGDDVA
TATNGNGGRVDVQAHQ*
GH17337.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:26:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF20194-PA | 729 | GF20194-PA | 1..729 | 1..716 | 2968 | 79.1 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:26:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG19228-PA | 679 | GG19228-PA | 1..679 | 1..716 | 3544 | 92.6 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:26:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH17653-PA | 533 | GH17653-PA | 1..533 | 181..713 | 2833 | 96.8 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pfrx-PB | 716 | CG3400-PB | 1..716 | 1..716 | 3690 | 100 | Plus |
Pfrx-PG | 716 | CG3400-PG | 1..716 | 1..716 | 3690 | 100 | Plus |
Pfrx-PN | 715 | CG3400-PN | 1..715 | 1..716 | 3674 | 99.9 | Plus |
Pfrx-PM | 536 | CG3400-PM | 1..536 | 181..716 | 2805 | 100 | Plus |
Pfrx-PL | 536 | CG3400-PL | 1..536 | 181..716 | 2805 | 100 | Plus |
Pfrx-PK | 536 | CG3400-PK | 1..536 | 181..716 | 2805 | 100 | Plus |
Pfrx-PJ | 536 | CG3400-PJ | 1..536 | 181..716 | 2805 | 100 | Plus |
Pfrx-PI | 536 | CG3400-PI | 1..536 | 181..716 | 2805 | 100 | Plus |
Pfrx-PA | 536 | CG3400-PA | 1..536 | 181..716 | 2805 | 100 | Plus |
Pfrx-PF | 536 | CG3400-PF | 1..536 | 181..716 | 2805 | 100 | Plus |
Pfrx-PE | 536 | CG3400-PE | 1..536 | 181..716 | 2805 | 100 | Plus |
Pfrx-PD | 536 | CG3400-PD | 1..536 | 181..716 | 2805 | 100 | Plus |
Pfrx-PH | 536 | CG3400-PH | 1..536 | 181..716 | 2805 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:26:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI16091-PA | 537 | GI16091-PA | 1..534 | 181..711 | 2816 | 96.3 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:26:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA17426-PA | 709 | GA17426-PA | 83..709 | 83..716 | 2985 | 90.7 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:26:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM22962-PA | 180 | GM22962-PA | 1..180 | 537..716 | 977 | 100 | Plus |
Dsec\GM22961-PA | 86 | GM22961-PA | 1..71 | 1..71 | 332 | 91.5 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ15740-PA | 726 | GJ15740-PA | 125..698 | 126..699 | 2834 | 91.1 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:27:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK25408-PA | 537 | GK25408-PA | 1..532 | 181..711 | 2831 | 97.4 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:27:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE15846-PA | 598 | GE15846-PA | 175..598 | 293..716 | 2338 | 99.3 | Plus |
Dyak\GE15846-PA | 598 | GE15846-PA | 1..170 | 1..207 | 563 | 77.3 | Plus |