Clone GH17442 Report

Search the DGRC for GH17442

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:174
Well:42
Vector:pOT2
Associated Gene/TranscriptCG12910-RA
Protein status:GH17442.pep: gold
Preliminary Size:1821
Sequenced Size:1708

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12910 2001-01-01 Release 2 assignment
CG12910 2001-10-10 Blastp of sequenced clone
CG12910 2008-04-29 Release 5.5 accounting
CG12910 2008-08-15 Release 5.9 accounting
CG12910 2008-12-18 5.12 accounting

Clone Sequence Records

GH17442.complete Sequence

1708 bp (1708 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060727

> GH17442.complete
CGATTCCTGAGGAGCGGAGTCCCTGCCGCACAGTTTGTTCCCGCTCGAGA
CATGCTGGCCGCCCCGGAGAACCGCTTCCAGCATGTGTACTTCGCGCTAT
CCGCCCTGGTGGCTAGCGCCATGCTCGTCCTGGTCTACATATCCATGCGC
TCGAGCCTTAACGAGCGGCTGCGCGAGGATCTGGCCAAGGCGCAGCGACA
GATGATCTTCGAGAGGCCGAATCCACACTGGGACTACAGCAACAGTTGGC
GCCGGATAGGGAACAGCACGCTCAGGCATGAGATATACTCGGCGTATTTC
GATGCCAGGACGGATATCGTAGGTAATGTCCGCATGGATGACGAGCAGAT
GACAATTGGTTCGCTGCGCATTTTCGCCATTCTGCCGGAGCGTCTGCGCG
ACTCGTCGATAAACTGCATCGTGCGCTTCTCGGACTTCTCCAGCCAGGAG
ATCAAGGCCGAGGAGGCGGGCGCCATGCACGATGTGCACAACAACACCTT
TGCGGCGTGGAGCATCATGTGTCCGCTGCACGCCTCCCGCCGCTCTCCCT
TGCGCCTTCCCCAGGCAGTGGCCTTGGCCTACGCGTCCAATCGACTCAGT
CACCTTAGTCCTACCTTTATTCAGATCAGTTATCCCCGCAACATGACCAA
CATGTTTGGCCGATCTCGACCCACGATCTCCGTGTGTGTGGGTCCCCTCC
ACGAGAACTACTCGAATGTGCTGCGGCTGGTGGAGTTCGTGGAGATGTAC
CGCCTGCAGGGTGCAACCCACTTCTACTTCTACTACGTAGAGGCCAGCGA
GGAGGTGCTTCGCGTGCTGGAGCACTACCAACGGATTGGCCTGGCCGATG
TCTTCGAATGGAATGTCCAAGCGCATATGCAGGATGTCCACTACGCCGGA
ATCGTGGCGCAGTTCAACGACTGTGTGTACCGTGCCAATGTGGTGGACAA
CTTTCGATACGCGGCAGTGGTGGACCTGGACGAGGTGGTGATGCCGCTGA
AGCACAACACCTTGGCGGACTACCTGCGCCAGTGCGACGAGGGCCGCACC
GCGGGCTTCGTCTTCCGCAACGTATTCTTCCACCGGCGAGACAGTAACGA
CACCTTCAACGCCCCCAGCCACGTTCTCAACAGACTGCTCTACACCCAGT
CGAAGGTGCGGCGAACGCTGGAGGTGCTGCCCGCCTACATACGAAGCAAG
GTGGTGGTGAATGCCAGGGCCATTGTGGAGATGGGCAACCATCAGGTGTA
CCGCGCCGCACCCGGATACGCCGATCATGTGGTACATCCCACGGTGGGCC
TACTGTTCCACTACCGCGACAAGTGCATCAATTGCAAGATGGTGCTGATC
GTTGACTATACGGCCCGGAGATTTGGCTCACTGCTCTTCGATCGAGTGGA
CAACACGTGCCTGGAGGTTTTTCTAAATCGCGGCATCTGCGATCTGGTGT
AGCCCGATCTTCGAGAGACGCCCCCTAAAAAATACCACAGATCTCTCGGG
TCAGTTGTGTTCGTGGCCTCAGAACGTCGACATGCTGAAGTTCTGCTCGC
TGCGAAGGAGCAAGGAGCCAGCGATTGTGGCTCCCAAAGTGGCCAAGAGT
GTACGACAAATTAGAATAAGTCCTAGCCGTTCCCATATAAGTGTTATACC
GTAATAAAATGTGCTTTAAGTGATTTGTGATGTAATCCGAAAAAAAAAAA
AAAAAAAA

GH17442.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12910-RA 1846 CG12910-RA 158..1846 1..1689 8445 100 Plus
CG12910.a 1599 CG12910.a 70..1599 160..1689 7650 100 Plus
DCAP-RI 2656 DCAP-RI 1..94 1507..1600 470 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 6155646..6156708 627..1689 5180 99.2 Plus
chr2R 21145070 chr2R 6155237..6155545 321..629 1530 99.7 Plus
chr2R 21145070 chr2R 6154603..6154767 160..324 795 98.8 Plus
chr2R 21145070 chr2R 6154372..6154530 1..159 750 98.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:56:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10268143..10269207 627..1691 5325 100 Plus
2R 25286936 2R 10267734..10268042 321..629 1545 100 Plus
2R 25286936 2R 10267100..10267264 160..324 825 100 Plus
2R 25286936 2R 10266869..10267027 1..159 795 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:27:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 10269342..10270406 627..1691 5325 100 Plus
2R 25260384 2R 10268933..10269241 321..629 1545 100 Plus
2R 25260384 2R 10268299..10268463 160..324 825 100 Plus
2R 25260384 2R 10268068..10268226 1..159 795 100 Plus
Blast to na_te.dros performed on 2019-03-16 09:47:22 has no hits.

GH17442.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:48:29 Download gff for GH17442.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 6154372..6154530 1..159 98 -> Plus
chr2R 6154603..6154765 160..322 98 -> Plus
chr2R 6155239..6155545 323..629 99 -> Plus
chr2R 6155649..6156708 630..1689 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:46:49 Download gff for GH17442.complete
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 1..1401 52..1452 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:37:33 Download gff for GH17442.complete
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 1..1401 52..1452 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:42:34 Download gff for GH17442.complete
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 1..1401 52..1452 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:06:25 Download gff for GH17442.complete
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 1..1401 52..1452 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:20:16 Download gff for GH17442.complete
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 1..1401 52..1452 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:18:13 Download gff for GH17442.complete
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 1..1689 1..1689 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:37:32 Download gff for GH17442.complete
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 158..1846 1..1689 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:34 Download gff for GH17442.complete
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 14..1702 1..1689 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:06:25 Download gff for GH17442.complete
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 1..1689 1..1689 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:20:16 Download gff for GH17442.complete
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 14..1702 1..1689 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:48:29 Download gff for GH17442.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10266869..10267027 1..159 100 -> Plus
2R 10267100..10267262 160..322 100 -> Plus
2R 10267736..10268042 323..629 100 -> Plus
2R 10268146..10269205 630..1689 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:48:29 Download gff for GH17442.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10266869..10267027 1..159 100 -> Plus
2R 10267100..10267262 160..322 100 -> Plus
2R 10267736..10268042 323..629 100 -> Plus
2R 10268146..10269205 630..1689 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:48:29 Download gff for GH17442.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10266869..10267027 1..159 100 -> Plus
2R 10267100..10267262 160..322 100 -> Plus
2R 10267736..10268042 323..629 100 -> Plus
2R 10268146..10269205 630..1689 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:34 Download gff for GH17442.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6154374..6154532 1..159 100 -> Plus
arm_2R 6154605..6154767 160..322 100 -> Plus
arm_2R 6155241..6155547 323..629 100 -> Plus
arm_2R 6155651..6156710 630..1689 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:42:26 Download gff for GH17442.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10268935..10269241 323..629 100 -> Plus
2R 10269345..10270404 630..1689 100   Plus
2R 10268068..10268226 1..159 100 -> Plus
2R 10268299..10268461 160..322 100 -> Plus

GH17442.hyp Sequence

Translation from 0 to 1451

> GH17442.hyp
RFLRSGVPAAQFVPARDMLAAPENRFQHVYFALSALVASAMLVLVYISMR
SSLNERLREDLAKAQRQMIFERPNPHWDYSNSWRRIGNSTLRHEIYSAYF
DARTDIVGNVRMDDEQMTIGSLRIFAILPERLRDSSINCIVRFSDFSSQE
IKAEEAGAMHDVHNNTFAAWSIMCPLHASRRSPLRLPQAVALAYASNRLS
HLSPTFIQISYPRNMTNMFGRSRPTISVCVGPLHENYSNVLRLVEFVEMY
RLQGATHFYFYYVEASEEVLRVLEHYQRIGLADVFEWNVQAHMQDVHYAG
IVAQFNDCVYRANVVDNFRYAAVVDLDEVVMPLKHNTLADYLRQCDEGRT
AGFVFRNVFFHRRDSNDTFNAPSHVLNRLLYTQSKVRRTLEVLPAYIRSK
VVVNARAIVEMGNHQVYRAAPGYADHVVHPTVGLLFHYRDKCINCKMVLI
VDYTARRFGSLLFDRVDNTCLEVFLNRGICDLV*

GH17442.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG12910-PC 466 CG12910-PC 1..466 18..483 2438 100 Plus
CG12910-PA 466 CG12910-PA 1..466 18..483 2438 100 Plus
CG12910-PB 464 CG12910-PB 18..464 41..483 2274 97.1 Plus
CG9395-PD 840 CG9395-PD 230..697 71..467 324 27 Plus
CG9395-PC 840 CG9395-PC 230..697 71..467 324 27 Plus

GH17442.pep Sequence

Translation from 51 to 1451

> GH17442.pep
MLAAPENRFQHVYFALSALVASAMLVLVYISMRSSLNERLREDLAKAQRQ
MIFERPNPHWDYSNSWRRIGNSTLRHEIYSAYFDARTDIVGNVRMDDEQM
TIGSLRIFAILPERLRDSSINCIVRFSDFSSQEIKAEEAGAMHDVHNNTF
AAWSIMCPLHASRRSPLRLPQAVALAYASNRLSHLSPTFIQISYPRNMTN
MFGRSRPTISVCVGPLHENYSNVLRLVEFVEMYRLQGATHFYFYYVEASE
EVLRVLEHYQRIGLADVFEWNVQAHMQDVHYAGIVAQFNDCVYRANVVDN
FRYAAVVDLDEVVMPLKHNTLADYLRQCDEGRTAGFVFRNVFFHRRDSND
TFNAPSHVLNRLLYTQSKVRRTLEVLPAYIRSKVVVNARAIVEMGNHQVY
RAAPGYADHVVHPTVGLLFHYRDKCINCKMVLIVDYTARRFGSLLFDRVD
NTCLEVFLNRGICDLV*

GH17442.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12788-PA 467 GF12788-PA 1..466 1..465 2241 87.1 Plus
Dana\GF21673-PA 806 GF21673-PA 238..696 58..448 330 27 Plus
Dana\GF20876-PA 450 GF20876-PA 101..449 67..422 156 24.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24157-PA 466 GG24157-PA 1..466 1..466 2439 97.2 Plus
Dere\GG10210-PA 817 GG10210-PA 242..703 58..448 337 27.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21777-PA 467 GH21777-PA 1..466 1..465 2111 81.5 Plus
Dgri\GH13458-PA 897 GH13458-PA 263..740 58..465 308 26.6 Plus
Dgri\GH25108-PA 894 GH25108-PA 263..740 58..465 308 26.6 Plus
Dgri\GH23635-PA 368 GH23635-PA 98..357 209..422 272 29.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12910-PC 466 CG12910-PC 1..466 1..466 2438 100 Plus
CG12910-PA 466 CG12910-PA 1..466 1..466 2438 100 Plus
CG12910-PB 464 CG12910-PB 18..464 24..466 2274 97.1 Plus
CG9395-PD 840 CG9395-PD 230..697 54..450 324 27 Plus
CG9395-PC 840 CG9395-PC 230..697 54..450 324 27 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19324-PA 466 GI19324-PA 1..465 1..465 2134 82.6 Plus
Dmoj\GI14075-PA 822 GI14075-PA 242..714 58..449 309 26.7 Plus
Dmoj\GI14981-PA 593 GI14981-PA 238..535 164..445 155 27.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10456-PA 444 GL10456-PA 1..443 24..465 2106 85.6 Plus
Dper\GL25717-PA 863 GL25717-PA 256..739 58..465 323 26.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:38:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11901-PA 467 GA11901-PA 1..466 1..465 2200 85.2 Plus
Dpse\GA21757-PA 754 GA21757-PA 257..726 58..448 309 25.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:38:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21200-PA 466 GM21200-PA 1..466 1..466 2473 98.9 Plus
Dsec\GM25641-PA 807 GM25641-PA 234..695 58..448 318 26.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10727-PA 466 GD10727-PA 1..466 1..466 2482 99.1 Plus
Dsim\GD22070-PA 805 GD22070-PA 232..693 58..448 316 26.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22202-PA 466 GJ22202-PA 1..465 1..465 2110 81.5 Plus
Dvir\GJ22525-PA 368 GJ22525-PA 1..367 100..465 1725 85 Plus
Dvir\GJ18267-PA 863 GJ18267-PA 250..741 58..465 314 26.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17787-PA 467 GK17787-PA 1..466 1..465 2151 82.8 Plus
Dwil\GK17786-PA 494 GK17786-PA 1..466 1..465 2151 82.8 Plus
Dwil\GK15290-PA 556 GK15290-PA 200..419 257..465 229 31.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19350-PA 466 GE19350-PA 1..466 1..466 2455 97.6 Plus
Dyak\GE11721-PA 828 GE11721-PA 249..712 58..448 304 27.6 Plus