Clone GH17465 Report

Search the DGRC for GH17465

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:174
Well:65
Vector:pOT2
Associated Gene/TranscriptCG1885-RA
Protein status:GH17465.pep: gold
Preliminary Size:1289
Sequenced Size:1163

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1885 2001-01-01 Release 2 assignment
CG1885 2003-01-01 Sim4 clustering to Release 3
CG1885 2003-02-22 Blastp of sequenced clone
CG1885 2008-04-29 Release 5.5 accounting
CG1885 2008-08-15 Release 5.9 accounting
CG1885 2008-12-18 5.12 accounting

Clone Sequence Records

GH17465.complete Sequence

1163 bp (1163 high quality bases) assembled on 2003-02-22

GenBank Submission: AY060729

> GH17465.complete
CGCAGCAAAGGCGGCAACAGTGGGCGGGGCAAGTAAGCGCTGGCGGAAAA
CTCGACAAAGGAAAATTCAGCACACAGTTTGCGTCCGATCAAAGTGAGAA
ACGTGAGCCAGCAGCAAGATGACGAGTCGCCAGCGAACTGTGATCATATT
CAAATCGGAATCGGAAAGCAGCGATGTGTACGCAGAAACGCTGGAGAAGC
ACGATTTCAATCCCGTCTTTGTGCCCACGCTGAGTTTCGGCTTCAAGAAT
CTCGATGAGCTGCGCGCCAAGCTTCAGAATCCGGATAAATATGCCGGCAT
CATATTCACATCGCCGCGCTGCGTGGAGGCCGTGGCTGAATCCCTCAATC
TCGGCGAGCTACCCGGCGGTTGGAAGATGTTGCATAACTATGCCGTCGGC
GAGGTGACCCACAATCTGGCGCTAAGCACCTTGGACCAGCTATTCACCCA
CGGCAAACAGACGGGCAATGCCCGGGCATTGGGCGACTATATAGTGGATA
CGTTCGATGGATCGCGTGCATTGCCGCTACTATTGCCATGCGGTAATCTG
GCCACCGATACGCTGCTATCCAAGCTGGCCGAGAATGGCTTCTCCGTGGA
TGCGTGCGAAGTGTACGAGACGCGCTGTCATCCCGAATTGGGCGCCAATG
TGGAGAGGGCATTGGAGATTTATGGCGAGTCGATTGAATTTCTTGCCTTC
TTCTCGCCATCGGGCGTCAATTGTGCACAGCAGTACTTCACCAGCCGTCA
GCTATCGATGGACAAATGGAAGCTGGTGGCCATCGGGCCGAGCACTAGGC
GTGCCCTCGAATCGCTGGGCCAAAAGGTTTACTGCACCGCCGAGCGGCCG
ACGGTGGAGCATCTGGTCAAGGTGCTGCTCAATCCGCAGGACAGTCGGGA
GCGGTTGCTCAAGGAGCGCGAACGGATGGCCGCCATCGAGAATAACAATT
AATCCTAAGATTTCTTAAGCTTTCGCAGCTCCAACGGCTAATCTCCACAA
ATCATCATCGGATCTATCATTTATATGGATACAAATCCAAGTGGGGAGTT
CTTATGGCCTGAATCTTTATAGTTATCCACAAGTAACTATGATGAACACA
ATCTGTAATTTCTATTTTATAAAATAAGATTTTCCATCATCGCAAAAAAA
AAAAAAAAAAAAA

GH17465.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG1885-RA 1147 CG1885-RA 1..1144 1..1144 5720 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8790682..8791824 1143..1 5715 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:56:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8899035..8900178 1144..1 5720 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8907133..8908276 1144..1 5720 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:50:37 has no hits.

GH17465.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:52:05 Download gff for GH17465.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8790682..8791824 1..1143 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:46:51 Download gff for GH17465.complete
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 1..834 119..952 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:49:02 Download gff for GH17465.complete
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 1..834 119..952 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:43:07 Download gff for GH17465.complete
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 1..834 119..952 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:40:25 Download gff for GH17465.complete
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 1..834 119..952 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:18:16 Download gff for GH17465.complete
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 1..834 119..952 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:01:35 Download gff for GH17465.complete
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 1..1143 1..1143 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:49:02 Download gff for GH17465.complete
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 1..1143 1..1143 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:43:07 Download gff for GH17465.complete
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 87..1229 1..1143 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:40:25 Download gff for GH17465.complete
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 1..1143 1..1143 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:18:16 Download gff for GH17465.complete
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 87..1229 1..1143 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:52:05 Download gff for GH17465.complete
Subject Subject Range Query Range Percent Splice Strand
X 8899036..8900178 1..1143 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:52:05 Download gff for GH17465.complete
Subject Subject Range Query Range Percent Splice Strand
X 8899036..8900178 1..1143 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:52:05 Download gff for GH17465.complete
Subject Subject Range Query Range Percent Splice Strand
X 8899036..8900178 1..1143 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:07 Download gff for GH17465.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8793069..8794211 1..1143 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:10:48 Download gff for GH17465.complete
Subject Subject Range Query Range Percent Splice Strand
X 8907134..8908276 1..1143 100   Minus

GH17465.hyp Sequence

Translation from 118 to 951

> GH17465.hyp
MTSRQRTVIIFKSESESSDVYAETLEKHDFNPVFVPTLSFGFKNLDELRA
KLQNPDKYAGIIFTSPRCVEAVAESLNLGELPGGWKMLHNYAVGEVTHNL
ALSTLDQLFTHGKQTGNARALGDYIVDTFDGSRALPLLLPCGNLATDTLL
SKLAENGFSVDACEVYETRCHPELGANVERALEIYGESIEFLAFFSPSGV
NCAQQYFTSRQLSMDKWKLVAIGPSTRRALESLGQKVYCTAERPTVEHLV
KVLLNPQDSRERLLKERERMAAIENNN*

GH17465.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1885-PB 277 CG1885-PB 1..277 1..277 1433 100 Plus
CG1885-PA 277 CG1885-PA 1..277 1..277 1433 100 Plus
CG9589-PA 253 CG9589-PA 1..251 1..253 513 41.9 Plus

GH17465.pep Sequence

Translation from 118 to 951

> GH17465.pep
MTSRQRTVIIFKSESESSDVYAETLEKHDFNPVFVPTLSFGFKNLDELRA
KLQNPDKYAGIIFTSPRCVEAVAESLNLGELPGGWKMLHNYAVGEVTHNL
ALSTLDQLFTHGKQTGNARALGDYIVDTFDGSRALPLLLPCGNLATDTLL
SKLAENGFSVDACEVYETRCHPELGANVERALEIYGESIEFLAFFSPSGV
NCAQQYFTSRQLSMDKWKLVAIGPSTRRALESLGQKVYCTAERPTVEHLV
KVLLNPQDSRERLLKERERMAAIENNN*

GH17465.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:32:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19123-PA 276 GF19123-PA 1..276 1..277 1312 88.1 Plus
Dana\GF18540-PA 253 GF18540-PA 1..251 1..253 544 41.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:32:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19019-PA 277 GG19019-PA 1..277 1..277 1459 98.2 Plus
Dere\GG16951-PA 253 GG16951-PA 6..251 5..253 541 43.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:32:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12072-PA 271 GH12072-PA 1..267 1..269 1172 80.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1885-PB 277 CG1885-PB 1..277 1..277 1433 100 Plus
CG1885-PA 277 CG1885-PA 1..277 1..277 1433 100 Plus
CG9589-PA 253 CG9589-PA 1..251 1..253 513 41.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15566-PA 269 GI15566-PA 1..269 1..271 1184 81.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13032-PA 284 GL13032-PA 1..271 1..274 1158 80.3 Plus
Dper\GL22234-PA 254 GL22234-PA 1..252 1..253 465 38 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15099-PA 287 GA15099-PA 1..274 1..274 1216 82.8 Plus
Dpse\GA21896-PA 254 GA21896-PA 1..252 1..253 457 37.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13694-PA 277 GM13694-PA 1..277 1..277 1457 98.2 Plus
Dsec\GM24258-PA 253 GM24258-PA 1..251 1..253 535 41.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19046-PA 253 GD19046-PA 1..251 1..253 532 41.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15178-PA 337 GJ15178-PA 79..337 11..271 1103 78.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16872-PA 275 GK16872-PA 1..266 1..265 1184 80.5 Plus
Dwil\GK16861-PA 703 GK16861-PA 562..675 51..164 552 86.8 Plus
Dwil\GK19190-PA 250 GK19190-PA 6..250 5..255 493 39 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17428-PA 277 GE17428-PA 1..276 1..276 1456 98.2 Plus
Dyak\GE24337-PA 252 GE24337-PA 1..250 1..253 538 42.7 Plus