Clone GH17516 Report

Search the DGRC for GH17516

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:175
Well:16
Vector:pOT2
Associated Gene/TranscriptCG8768-RA
Protein status:GH17516.pep: gold
Preliminary Size:1258
Sequenced Size:1186

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8768 2001-01-01 Release 2 assignment
CG8768 2003-01-01 Sim4 clustering to Release 3
CG8768 2003-03-19 Blastp of sequenced clone
CG8768 2008-04-29 Release 5.5 accounting
CG8768 2008-08-15 Release 5.9 accounting
CG8768 2008-12-18 5.12 accounting

Clone Sequence Records

GH17516.complete Sequence

1186 bp (1186 high quality bases) assembled on 2003-03-19

GenBank Submission: AY069155

> GH17516.complete
GAAAAGTCGCCAATTTGGAGCAACCTCTTATGATTATTCCAAAAATGTCG
AGGCATGCTCTGATAGGTGGTGGCACTGGCTTCATCGGTCGCAACCTGGC
TAACCATTTGACCAAAAAGGGTTACGATGTGACGGTGATCTCCCGCATGC
CAGGTGCGAAGCGTATCACCTGGCACGAGCTGGAGAAGAATGGTATTCCC
GGATCCGTAAACGCCGTGGTAAATGCCACGGGCCAGAACACATTGGATCC
AACGAGACGCTGGACTCCAGGATTCCAGCAGAATGTGTGGAACTCGCGAA
TCAACTCCTCAAAAACTTTGGCTCAGGCTATTAAGTCGGCTCCCCAGGTC
TCATCTTTCGTGAATCTATGCGGTGTGAGTCACTATAAACCCTCGGAGTC
CAAGGTTTACACCGAGGAGGATCAGGTGCAAGGATTCGACTACATGTCCA
GGTTGTGCTTGGCCTGGGAGGAGGCTGCACACACTGGTAGTGAGCAGGAT
TGTAAAACCACCATCCTGCGGTGTGGCGCTGTTGTGGGTCATGGCGGGGG
CATGGTTCAGTCCATGTGGCTGCCCTTTAAGTTTGGCGTAGGAGGACCAT
TGGGTAATGGAAACCAAATAATGCCATGGATACACCTGCACGATCTGTGC
AGCTTGATACAGTACATCATAGAGAAACCAGTGCCAGGAGTGGTCAATGC
GGTGGCCCCAGAAATAACCAGCAATTTGGAGTTTAGCAAAGCCTTTGCCA
AAGCACTTCATCGCCCGTGTATCTTCGGCGTTCCAGAGTTTGTTGTCCAA
GCCATCTTTGGACCAGAGCGGGCAGCTCTGGTTTTAAGTGGTGCCAAGGT
CAAGCCACAGAAAGCTCTATCATCCGGATTTAAATTTCAATATCCCAGCG
TCAAAGAGGCTGTGACGCAACTGACCCTCAAAGGATAACCGAATCTACAC
TGAATTCTGGTTACACGTATGCTTTATTATAAAGCAGTCTGTATATTAAA
TAGATGTTAGTACCAAGCGCAAATTAAAACGAATTTCTGCGATAGGGGGA
TTTATGAATCACGCCCTCCGAAAATAGACCCATTTAATTTGTTTACTCAT
TAGTCTTGTCCACCAGTATTTCATCATTATTTTGGTACCACATTAAATGT
AATCATTGACTTAATTCGAAAAAAAAAAAAAAAAAA

GH17516.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8768-RA 1479 CG8768-RA 131..1299 1..1169 5845 100 Plus
CG8768.a 1375 CG8768.a 177..1281 65..1169 5525 100 Plus
CG8768.a 1375 CG8768.a 54..121 1..68 340 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8579344..8579788 509..65 2225 100 Minus
chr2R 21145070 chr2R 8578571..8578998 1168..741 2140 100 Minus
chr2R 21145070 chr2R 8579054..8579285 741..510 1160 100 Minus
chr2R 21145070 chr2R 8579844..8579911 68..1 340 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:56:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12692081..12692525 509..65 2225 100 Minus
2R 25286936 2R 12691307..12691735 1169..741 2145 100 Minus
2R 25286936 2R 12691791..12692022 741..510 1160 100 Minus
2R 25286936 2R 12692581..12692648 68..1 340 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12693280..12693724 509..65 2225 100 Minus
2R 25260384 2R 12692506..12692934 1169..741 2145 100 Minus
2R 25260384 2R 12692990..12693221 741..510 1160 100 Minus
2R 25260384 2R 12693780..12693847 68..1 340 100 Minus
Blast to na_te.dros performed on 2019-03-15 11:37:41 has no hits.

GH17516.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:38:38 Download gff for GH17516.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8578571..8578998 741..1168 100 <- Minus
chr2R 8579055..8579285 510..740 100 <- Minus
chr2R 8579344..8579786 67..509 100 <- Minus
chr2R 8579846..8579911 1..66 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:46:56 Download gff for GH17516.complete
Subject Subject Range Query Range Percent Splice Strand
CG8768-RA 1..909 30..938 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:46:22 Download gff for GH17516.complete
Subject Subject Range Query Range Percent Splice Strand
CG8768-RA 1..909 30..938 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:31:39 Download gff for GH17516.complete
Subject Subject Range Query Range Percent Splice Strand
CG8768-RA 1..909 30..938 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:37:48 Download gff for GH17516.complete
Subject Subject Range Query Range Percent Splice Strand
CG8768-RA 1..909 30..938 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:39:34 Download gff for GH17516.complete
Subject Subject Range Query Range Percent Splice Strand
CG8768-RA 1..909 30..938 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:57:48 Download gff for GH17516.complete
Subject Subject Range Query Range Percent Splice Strand
CG8768-RA 41..1208 1..1168 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:46:22 Download gff for GH17516.complete
Subject Subject Range Query Range Percent Splice Strand
CG8768-RA 41..1208 1..1168 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:31:39 Download gff for GH17516.complete
Subject Subject Range Query Range Percent Splice Strand
CG8768-RA 43..1210 1..1168 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:37:48 Download gff for GH17516.complete
Subject Subject Range Query Range Percent Splice Strand
CG8768-RA 41..1208 1..1168 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:39:34 Download gff for GH17516.complete
Subject Subject Range Query Range Percent Splice Strand
CG8768-RA 43..1210 1..1168 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:38:38 Download gff for GH17516.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12692583..12692648 1..66 100   Minus
2R 12692081..12692523 67..509 100 <- Minus
2R 12691308..12691735 741..1168 100 <- Minus
2R 12691792..12692022 510..740 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:38:38 Download gff for GH17516.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12692583..12692648 1..66 100   Minus
2R 12692081..12692523 67..509 100 <- Minus
2R 12691308..12691735 741..1168 100 <- Minus
2R 12691792..12692022 510..740 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:38:38 Download gff for GH17516.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12692583..12692648 1..66 100   Minus
2R 12692081..12692523 67..509 100 <- Minus
2R 12691308..12691735 741..1168 100 <- Minus
2R 12691792..12692022 510..740 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:31:39 Download gff for GH17516.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8578813..8579240 741..1168 100 <- Minus
arm_2R 8579297..8579527 510..740 100 <- Minus
arm_2R 8579586..8580028 67..509 100 <- Minus
arm_2R 8580088..8580153 1..66 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:08:01 Download gff for GH17516.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12692991..12693221 510..740 100 <- Minus
2R 12692507..12692934 741..1168 100 <- Minus
2R 12693280..12693722 67..509 100 <- Minus
2R 12693782..12693847 1..66 100   Minus

GH17516.hyp Sequence

Translation from 2 to 937

> GH17516.hyp
KVANLEQPLMIIPKMSRHALIGGGTGFIGRNLANHLTKKGYDVTVISRMP
GAKRITWHELEKNGIPGSVNAVVNATGQNTLDPTRRWTPGFQQNVWNSRI
NSSKTLAQAIKSAPQVSSFVNLCGVSHYKPSESKVYTEEDQVQGFDYMSR
LCLAWEEAAHTGSEQDCKTTILRCGAVVGHGGGMVQSMWLPFKFGVGGPL
GNGNQIMPWIHLHDLCSLIQYIIEKPVPGVVNAVAPEITSNLEFSKAFAK
ALHRPCIFGVPEFVVQAIFGPERAALVLSGAKVKPQKALSSGFKFQYPSV
KEAVTQLTLKG*

GH17516.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8768-PA 302 CG8768-PA 1..302 10..311 1597 100 Plus

GH17516.pep Sequence

Translation from 29 to 937

> GH17516.pep
MIIPKMSRHALIGGGTGFIGRNLANHLTKKGYDVTVISRMPGAKRITWHE
LEKNGIPGSVNAVVNATGQNTLDPTRRWTPGFQQNVWNSRINSSKTLAQA
IKSAPQVSSFVNLCGVSHYKPSESKVYTEEDQVQGFDYMSRLCLAWEEAA
HTGSEQDCKTTILRCGAVVGHGGGMVQSMWLPFKFGVGGPLGNGNQIMPW
IHLHDLCSLIQYIIEKPVPGVVNAVAPEITSNLEFSKAFAKALHRPCIFG
VPEFVVQAIFGPERAALVLSGAKVKPQKALSSGFKFQYPSVKEAVTQLTL
KG*

GH17516.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:13:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13097-PA 297 GF13097-PA 1..296 6..301 1288 81.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22555-PA 302 GG22555-PA 1..302 1..302 1555 94.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19955-PA 298 GH19955-PA 1..298 6..301 1148 68.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8768-PA 302 CG8768-PA 1..302 1..302 1597 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19914-PA 295 GI19914-PA 1..295 6..301 1168 71.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17730-PA 296 GL17730-PA 1..296 6..301 1247 76 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24893-PA 296 GA24893-PA 1..296 6..301 1244 75.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20339-PA 302 GM20339-PA 1..302 1..302 1586 97.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25817-PA 297 GD25817-PA 1..297 6..302 1561 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15081-PA 298 GJ15081-PA 1..298 6..301 1158 69.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21688-PA 296 GK21688-PA 1..296 6..301 1197 73.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13425-PA 302 GE13425-PA 1..302 1..302 1569 96 Plus