Clone GH17623 Report

Search the DGRC for GH17623

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:176
Well:23
Vector:pOT2
Associated Gene/TranscriptCG30159-RA
Protein status:GH17623.pep: gold
Preliminary Size:1600
Sequenced Size:1562

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30159 2001-09-19 Blastp of sequenced clone
CG30159 2008-04-29 Release 5.5 accounting
CG30159 2008-08-15 Release 5.9 accounting
CG30159 2008-12-18 5.12 accounting

Clone Sequence Records

GH17623.complete Sequence

1562 bp (1562 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060312

> GH17623.complete
CACGAACGGTTCGAAAAGCGGAGCGCGCGTAAAATCATTCTGTAAATCAT
TCAAAAGGCGGAAAACTCAAGGTGTGTGTGTGGGTTTTGTTTTCAAATTC
CGTGTGCTTGTGTGTGTGAGAGAGGGCGAGAGCGACAGTGTCGTAGCAGG
CAGTGTTGTAAGGTGCCGAAACAGCGATCCCAACCGGCACACTAGTTGTC
CTGCTCGCACTCCAGTGAGGCAAATGTCAAAGTCTGGTCAGTAGCAAAAC
AGAATTGCAGCCAAGAAAAGCGGAATCAGCGACAAAATTAGCCATTAGTT
GGGTTTTACATATAGATTAGGCCAGCGAAACGACATAACGCTCCAAGTGG
TAAATTATCCAATGGAGGCGGCCAAGGATTTTGCGGTGGCCAAGTACCAG
GACTTATGTAACTTCCTGGAGCGGGATACGCGCGGCAGTGAGCTGGCCAT
CTATGGCACCTCGGCCATCATGCTGGCCGTGGCCTATGCCAAACGGAAGC
CGGCCTACCTGGTGCGCCAGTTTAAGCAGCCCTCGCACATCCCGGAGCGC
CTGATCAACGAGCGCGTCATGCACACGGGCAAGATCGCCGGGGTCAAGCA
GCAGGAGCAGGACACCCTGCTGATGATCCAGCACCGGCCGCTTTTCCCGA
TCTTCACTAGCAGCAAACGCCTGCTGCCCGTCAAACTGCCGGGCGTGCGC
GTCAATGCCAACGGCTACTCCTGGCTGCAGCAGTGTCTCATTGGGCGCGA
GGCCACCTTTCTGCCCCTTAAATCCGCCAAGGGACAGGACTTTGTTGTCT
GCCAGCTGTGCCTGGTCCATCCGCCGAGGGGCAACCGCCTGCTGGACGTC
TCGGAGACCCTGCTCAAGCTCCGCTTCGCCCGATTCGTGCAGGATGCCGC
CGCCGCGGTTAAGAAGAACGGGAAGTACTACCAGCATCTGAAGAAGGTGG
AGCAGACCACAGCGGAAAAGGAGGCCTGGCTCTCCTGGGCCGCCGGCTAT
CCCTACATCTGGCGCCGCTACAACGAACTGAGGCAGCGCTGGTTGCCCAA
GGAGAAGCTGCTGCCGGAGCTAGTGCGCTGATTGCGATCTCCCCGTTCCT
GCCTCGATGCTATTTACAGGGCTACCTAGCTCGCCACCATTAACTTAGTT
CCATGGCCAGCTACTCTCTATATTTTTATTATGCCTGTTTACTAGCTTGT
GCATTTGTGTCTTAGTGTTGCTTGCTATCTATTGTTATACGATTGGCAAA
TATCATATACGATATAAGACAGCATTTGTTTACAAACCCTCGAGCACAAG
TACACAAGTCAGTCTCAAAAGCTTATTAGTAAGGGGAATAGCTAGCGCGA
CTTGCCCAACGCGACTTTCGATGCCCAGGCGGTACGTGATCGTGTGCTAA
TTTCCACACCCAGTAGAGCCAAGAACGTCAGCATTTTTTAAATATTCAAA
TAAGCGAAATGTTTTTACCACGGATGACATCAGTGCGTGTGCCTGTGTGT
GTACGTGTGCGTGTTTCCCAAATAAAATGCCGAAATACCTAAAAAAAAAA
AAAAAAAAAAAA

GH17623.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG30159-RC 1627 CG30159-RC 22..1563 1..1542 7710 100 Plus
CG30159.a 1870 CG30159.a 24..1560 1..1542 7610 99.6 Plus
CG30159-RA 1702 CG30159-RA 24..1560 1..1542 7610 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 2880528..2881713 355..1540 5915 99.9 Plus
chr2R 21145070 chr2R 2880114..2880467 1..354 1770 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:56:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6993121..6994308 355..1542 5940 100 Plus
2R 25286936 2R 6992707..6993060 1..354 1770 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 6994320..6995507 355..1542 5940 100 Plus
2R 25260384 2R 6993906..6994259 1..354 1770 100 Plus
Blast to na_te.dros performed on 2019-03-16 07:27:08 has no hits.

GH17623.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:27:49 Download gff for GH17623.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 2880114..2880467 1..354 100 -> Plus
chr2R 2880528..2881713 355..1540 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:46:59 Download gff for GH17623.complete
Subject Subject Range Query Range Percent Splice Strand
CG30159-RA 1..720 362..1081 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:06:53 Download gff for GH17623.complete
Subject Subject Range Query Range Percent Splice Strand
CG30159-RC 1..720 362..1081 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:31:19 Download gff for GH17623.complete
Subject Subject Range Query Range Percent Splice Strand
CG30159-RB 1..720 362..1081 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:37:39 Download gff for GH17623.complete
Subject Subject Range Query Range Percent Splice Strand
CG30159-RA 1..720 362..1081 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:32:52 Download gff for GH17623.complete
Subject Subject Range Query Range Percent Splice Strand
CG30159-RB 1..720 362..1081 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:56:48 Download gff for GH17623.complete
Subject Subject Range Query Range Percent Splice Strand
CG30159-RA 22..1556 1..1540 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:06:53 Download gff for GH17623.complete
Subject Subject Range Query Range Percent Splice Strand
CG30159-RC 22..1561 1..1540 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:19 Download gff for GH17623.complete
Subject Subject Range Query Range Percent Splice Strand
CG30159-RC 27..1566 1..1540 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:37:39 Download gff for GH17623.complete
Subject Subject Range Query Range Percent Splice Strand
CG30159-RA 22..1556 1..1540 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:32:52 Download gff for GH17623.complete
Subject Subject Range Query Range Percent Splice Strand
CG30159-RC 27..1566 1..1540 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:27:49 Download gff for GH17623.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6992707..6993060 1..354 100 -> Plus
2R 6993121..6994306 355..1540 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:27:49 Download gff for GH17623.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6992707..6993060 1..354 100 -> Plus
2R 6993121..6994306 355..1540 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:27:49 Download gff for GH17623.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6992707..6993060 1..354 100 -> Plus
2R 6993121..6994306 355..1540 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:19 Download gff for GH17623.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2880212..2880565 1..354 100 -> Plus
arm_2R 2880626..2881811 355..1540 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:14:52 Download gff for GH17623.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6993906..6994259 1..354 100 -> Plus
2R 6994320..6995505 355..1540 100   Plus

GH17623.pep Sequence

Translation from 361 to 1080

> GH17623.pep
MEAAKDFAVAKYQDLCNFLERDTRGSELAIYGTSAIMLAVAYAKRKPAYL
VRQFKQPSHIPERLINERVMHTGKIAGVKQQEQDTLLMIQHRPLFPIFTS
SKRLLPVKLPGVRVNANGYSWLQQCLIGREATFLPLKSAKGQDFVVCQLC
LVHPPRGNRLLDVSETLLKLRFARFVQDAAAAVKKNGKYYQHLKKVEQTT
AEKEAWLSWAAGYPYIWRRYNELRQRWLPKEKLLPELVR*

GH17623.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:20:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13153-PA 238 GF13153-PA 1..238 1..239 1046 84.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:20:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23238-PA 239 GG23238-PA 1..239 1..239 1228 95 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21492-PA 239 GH21492-PA 1..239 1..239 994 72.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG30159-PC 239 CG30159-PC 1..239 1..239 1249 100 Plus
CG30159-PA 239 CG30159-PA 1..239 1..239 1249 100 Plus
CG30159-PB 239 CG30159-PB 1..239 1..239 1249 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19463-PA 235 GI19463-PA 2..235 6..239 1012 76.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11132-PA 239 GL11132-PA 1..239 1..239 1056 79.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15686-PA 239 GA15686-PA 1..239 1..239 1056 79.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20911-PA 239 GM20911-PA 1..239 1..239 1231 96.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10440-PA 239 GD10440-PA 1..239 1..239 1255 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15123-PA 239 GJ15123-PA 1..239 1..239 1024 75.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19403-PA 242 GK19403-PA 7..242 4..239 994 74.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19089-PA 239 GE19089-PA 1..239 1..239 1226 95.4 Plus

GH17623.hyp Sequence

Translation from 361 to 1080

> GH17623.hyp
MEAAKDFAVAKYQDLCNFLERDTRGSELAIYGTSAIMLAVAYAKRKPAYL
VRQFKQPSHIPERLINERVMHTGKIAGVKQQEQDTLLMIQHRPLFPIFTS
SKRLLPVKLPGVRVNANGYSWLQQCLIGREATFLPLKSAKGQDFVVCQLC
LVHPPRGNRLLDVSETLLKLRFARFVQDAAAAVKKNGKYYQHLKKVEQTT
AEKEAWLSWAAGYPYIWRRYNELRQRWLPKEKLLPELVR*

GH17623.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG30159-PC 239 CG30159-PC 1..239 1..239 1249 100 Plus
CG30159-PA 239 CG30159-PA 1..239 1..239 1249 100 Plus
CG30159-PB 239 CG30159-PB 1..239 1..239 1249 100 Plus