Clone GH17657 Report

Search the DGRC for GH17657

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:176
Well:57
Vector:pOT2
Associated Gene/TranscriptCG7848-RA
Protein status:GH17657.pep: gold
Preliminary Size:2259
Sequenced Size:2071

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7848 2001-01-01 Release 2 assignment
CG7848 2001-09-19 Blastp of sequenced clone
CG7848 2003-01-01 Sim4 clustering to Release 3
CG7848 2008-04-29 Release 5.5 accounting
CG7848 2008-08-15 Release 5.9 accounting
CG7848 2008-12-18 5.12 accounting

Clone Sequence Records

GH17657.complete Sequence

2071 bp (2071 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058405

> GH17657.complete
TCGGACAGTAATAACCCACACGCAGACACCTTCCCGTTTTCGCTGGAACC
TACACATTCAATAACACATCCCAGTCTAAAACATCGTCCTGCCCAAGGAC
ATCATGCAGAAGTCGCCCAGGATGAGCCGCCTGTCGGCCGAAAAAAAGAA
AAAGAAAGACGATGAAAAGAAGGACAATGCGGAGGAAGAGTTGCAGAAGA
ACAAGGAGCTAAAGTGCGTGAGCAACTACGACAAGACCGAGATACTCGAC
TATATGCCCCGATATATGGATACCTTCTGGAAAATGGACACGCGGCTGAG
CGGATCCAAGGTGGATGGTCTATGGATGCTCAACCAGTCCAACTACAACA
AGGGACTGGCCTTCACACTGAACGAAAGGCGAGTGCTATCCATTCACGGA
CTACTTCCGGTGGCAGTGCGAACTATAGATGAACAGGCGGAGATCTGCAG
TAATCTCCTCGAGTCATTTACCAATAACGTGCAACAGTATATATATCTGA
CATATCTGTCTCGTCGAAATAGGCGATTATTCTACTACCTTTTGCTGTCC
AATCCCGATCGCTTTGTACCCATGACGGATGCCTCGGGCTCGATAGATCT
GCTAATGGTCCACAGGATGATCCATTCGATGGGCCAGGGTCTTTACATTT
GCATTAAGGATCTGGGGCACGTTTCGCAAATCCTGTCTAATTGGCCATTC
CGTTGCGTTCGCTGCCTGCTGGTGAGCAATGGTGCCTCTGTTCTGAGTGT
GGGTGACTTGGGTGTCGACGAGATGCCCATACTGTTCTCCAACTTGCATC
AGAATGTCGTCTATGGCGGCATTCATCCGGCTTATTGCTTGGCCGTAATG
CTGGATGTGGGTACCAATAATGAGGAACTGTTGAACGATCCGATGTATAC
GGGCCTGCGGGAGCGCCGTTGCTCAGAAAAACTGTACGACCAGCTGTTCG
AGGAATTCACACTGTCCGTGATGCAGCAGTATGGACCACGTGCCCTGATC
CTGTGCAAGGACTTTGAGGCCCAGAAGGCCAAGAAGCAATTGGAGCTGTA
CCGCGAACGCCAGTGCATTGTCGACGTGGACTTTCAGTGCTTCGCTGCAG
TTGCTCTGGCCGGTGTGATAGTGTGCAACCGATTGAAGAGAGTCTTCTTC
TCCTCCAACGTATTCCTGTTCTACGGCGCCGAAGCCATTAACATTGGCAT
GGCTCGATTGTGTATGGTCCTGCTGAAACGTGAGGGTCTCATCGAAATGA
AGGCCAGGGAGAAGATTTGGTTCTTCGATGCCAATGGATTGGTAGTACTG
GGGAGGAAGGATATACCCGAAGAGCTTCTGGAATTTGCCAACCAAAGGGA
TCCGATCCTCGACCTGGTCGAGGCCATTCAGGAGTTGAAGCCCAACATCC
TTGTGGGTGGGTCATCGCTGCCGAATACCTTTACCCCCGATGTCCTGCGT
GCCATGGAGAAGAGCGCCGATCAACCTGTGATATTTGCACTATCAAGACC
CCTCGAGCAAACAGAATGTTCTGCGGAGGATGCTTTTTCCTACACAAAAG
GTCATTGCATCTTCATCTCGGGCTCGAAGCTTCCCCCGCTGAAGTATGCC
AACAAATGGTATCAGCCGGGGCATTGCACCAGTAGCTATTTGGTGGCTGG
AATAAGTTGCGGCGTGATGTTGGCCGGATTTACAAACATTCCGGATGAGG
CATTCTGTGTGGCCGCCGAGCGTTTGGCCAGCTTGGTCTGGCCCTGTGAC
CTGGAGAAGCGGAATGTGTATCCGCCGATGAGGAAAATCCAGTGCATCAG
CCTGCAGATTGCCGAGGCCATATTCTCGTACGCCTTTGGACGCGGATTGG
CCACTCTATATCCGCAGCCGGAAAACCCAATGGAATACATCAAGAACTCG
ATGTACAACCCGGAGTACCGAATGAACATCGTTGACGTTTACTGCATGCA
AAATCGTAGTATCGCCACCACGGAATCCCGCAAGTACTACACGCTTGATA
TCTAGGACCTGTACTTACGTTTAGGCCATTATTAAATGAACTAAACCAGA
AAAAAAAAAAAAAAAAAAAAA

GH17657.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7848-RA 2107 CG7848-RA 55..2104 1..2050 10250 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12321144..12323192 2049..1 10095 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:56:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16433851..16435900 2050..1 10250 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16435050..16437099 2050..1 10250 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:56:49 has no hits.

GH17657.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:57:38 Download gff for GH17657.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12321144..12323192 1..2049 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:47:05 Download gff for GH17657.complete
Subject Subject Range Query Range Percent Splice Strand
CG7848-RA 1..1902 104..2005 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:06:30 Download gff for GH17657.complete
Subject Subject Range Query Range Percent Splice Strand
CG7848-RA 1..1902 104..2005 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:50:05 Download gff for GH17657.complete
Subject Subject Range Query Range Percent Splice Strand
CG7848-RA 1..1902 104..2005 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:37:13 Download gff for GH17657.complete
Subject Subject Range Query Range Percent Splice Strand
CG7848-RA 1..1902 104..2005 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:48:36 Download gff for GH17657.complete
Subject Subject Range Query Range Percent Splice Strand
CG7848-RA 1..1902 104..2005 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:56:16 Download gff for GH17657.complete
Subject Subject Range Query Range Percent Splice Strand
CG7848-RA 55..2103 1..2049 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:06:29 Download gff for GH17657.complete
Subject Subject Range Query Range Percent Splice Strand
CG7848-RA 55..2103 1..2049 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:50:05 Download gff for GH17657.complete
Subject Subject Range Query Range Percent Splice Strand
CG7848-RA 55..2103 1..2049 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:37:16 Download gff for GH17657.complete
Subject Subject Range Query Range Percent Splice Strand
CG7848-RA 55..2103 1..2049 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:48:36 Download gff for GH17657.complete
Subject Subject Range Query Range Percent Splice Strand
CG7848-RA 55..2103 1..2049 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:57:38 Download gff for GH17657.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16433852..16435900 1..2049 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:57:38 Download gff for GH17657.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16433852..16435900 1..2049 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:57:38 Download gff for GH17657.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16433852..16435900 1..2049 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:50:05 Download gff for GH17657.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12321357..12323405 1..2049 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:14:25 Download gff for GH17657.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16435051..16437099 1..2049 100   Minus

GH17657.pep Sequence

Translation from 103 to 2004

> GH17657.pep
MQKSPRMSRLSAEKKKKKDDEKKDNAEEELQKNKELKCVSNYDKTEILDY
MPRYMDTFWKMDTRLSGSKVDGLWMLNQSNYNKGLAFTLNERRVLSIHGL
LPVAVRTIDEQAEICSNLLESFTNNVQQYIYLTYLSRRNRRLFYYLLLSN
PDRFVPMTDASGSIDLLMVHRMIHSMGQGLYICIKDLGHVSQILSNWPFR
CVRCLLVSNGASVLSVGDLGVDEMPILFSNLHQNVVYGGIHPAYCLAVML
DVGTNNEELLNDPMYTGLRERRCSEKLYDQLFEEFTLSVMQQYGPRALIL
CKDFEAQKAKKQLELYRERQCIVDVDFQCFAAVALAGVIVCNRLKRVFFS
SNVFLFYGAEAINIGMARLCMVLLKREGLIEMKAREKIWFFDANGLVVLG
RKDIPEELLEFANQRDPILDLVEAIQELKPNILVGGSSLPNTFTPDVLRA
MEKSADQPVIFALSRPLEQTECSAEDAFSYTKGHCIFISGSKLPPLKYAN
KWYQPGHCTSSYLVAGISCGVMLAGFTNIPDEAFCVAAERLASLVWPCDL
EKRNVYPPMRKIQCISLQIAEAIFSYAFGRGLATLYPQPENPMEYIKNSM
YNPEYRMNIVDVYCMQNRSIATTESRKYYTLDI*

GH17657.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:54:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11263-PA 619 GF11263-PA 5..619 6..633 2067 59.8 Plus
Dana\GF18099-PA 814 GF18099-PA 247..814 50..615 1139 40.1 Plus
Dana\GF23280-PA 622 GF23280-PA 51..593 65..605 1008 36.8 Plus
Dana\GF11264-PA 603 GF11264-PA 48..583 79..613 881 34 Plus
Dana\GF11265-PA 615 GF11265-PA 38..571 74..606 851 33.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22266-PA 634 GG22266-PA 1..634 1..633 2961 86.6 Plus
Dere\GG17100-PA 769 GG17100-PA 215..769 62..615 1154 40.8 Plus
Dere\GG11530-PA 617 GG11530-PA 49..588 68..605 1015 36.7 Plus
Dere\GG22267-PA 610 GG22267-PA 55..589 81..614 821 33.5 Plus
Dere\GG22268-PA 602 GG22268-PA 47..572 81..606 816 32.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20645-PA 615 GH20645-PA 14..615 35..633 1640 49.5 Plus
Dgri\GH19210-PA 815 GH19210-PA 226..813 24..613 1100 37.3 Plus
Dgri\GH20613-PA 869 GH20613-PA 289..828 68..605 982 36.1 Plus
Dgri\GH17523-PA 629 GH17523-PA 61..600 68..605 981 36.1 Plus
Dgri\GH20647-PA 608 GH20647-PA 55..577 81..602 847 34.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7848-PA 633 CG7848-PA 1..633 1..633 3315 100 Plus
Men-PA 759 CG10120-PA 159..759 28..615 1102 38.4 Plus
Men-PB 763 CG10120-PB 163..763 28..615 1102 38.4 Plus
Men-PC 578 CG10120-PC 24..578 62..615 1098 40.3 Plus
Men-b-PA 617 CG5889-PA 49..592 68..609 987 36.4 Plus
Men-b-PB 621 CG5889-PB 49..592 68..609 987 36.4 Plus
Men-b-PC 624 CG5889-PC 49..592 68..609 987 36.4 Plus
Menl-2-PE 600 CG7969-PE 47..575 81..609 791 31.4 Plus
Menl-2-PA 600 CG7969-PA 47..575 81..609 791 31.4 Plus
Menl-1-PD 610 CG7964-PD 56..588 82..613 791 33 Plus
Menl-2-PD 558 CG7969-PD 2..533 78..609 775 30.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19011-PA 610 GI19011-PA 11..606 37..629 1577 46.8 Plus
Dmoj\GI24244-PA 818 GI24244-PA 259..818 58..615 1123 38.8 Plus
Dmoj\GI23201-PA 622 GI23201-PA 54..593 68..605 985 36.3 Plus
Dmoj\GI19012-PA 609 GI19012-PA 55..576 81..601 816 33.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11343-PA 617 GL11343-PA 13..617 31..633 1867 57.5 Plus
Dper\GL23904-PA 625 GL23904-PA 57..596 68..605 1001 36.7 Plus
Dper\GL23167-PA 438 GL23167-PA 1..436 180..613 930 40.4 Plus
Dper\GL11344-PA 602 GL11344-PA 46..565 82..601 894 35.8 Plus
Dper\GL11345-PA 597 GL11345-PA 42..566 70..601 863 33.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20630-PA 617 GA20630-PA 13..617 31..633 1865 57.4 Plus
Dpse\GA10087-PB 827 GA10087-PB 244..825 38..613 1127 39.1 Plus
Dpse\GA10087-PA 825 GA10087-PA 242..823 38..613 1126 39.1 Plus
Dpse\GA19206-PB 632 GA19206-PB 57..596 68..605 995 36.5 Plus
Dpse\GA19206-PC 629 GA19206-PC 57..596 68..605 995 36.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20055-PA 633 GM20055-PA 1..633 1..633 3187 94.6 Plus
Dsec\GM25984-PA 759 GM25984-PA 192..759 50..615 1132 39.7 Plus
Dsec\GM10372-PA 617 GM10372-PA 49..588 68..605 1013 36.7 Plus
Dsec\GM20057-PA 598 GM20057-PA 44..572 78..606 825 31.4 Plus
Dsec\GM20056-PA 610 GM20056-PA 56..589 82..614 807 32.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25536-PA 627 GD25536-PA 1..627 7..633 3142 94.3 Plus
Dsim\Men-PA 759 GD20544-PA 192..759 50..615 1134 39.9 Plus
Dsim\GD25538-PA 600 GD25538-PA 44..572 78..606 822 31.4 Plus
Dsim\GD25537-PA 610 GD25537-PA 56..589 82..614 818 33.1 Plus
Dsim\GD21330-PA 244 GD21330-PA 49..233 68..253 292 34.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19974-PA 610 GJ19974-PA 11..610 37..633 1668 51.5 Plus
Dvir\GJ10817-PA 816 GJ10817-PA 234..806 30..605 1126 39.3 Plus
Dvir\GJ22862-PA 623 GJ22862-PA 55..594 68..605 982 36.1 Plus
Dvir\GJ19975-PA 456 GJ19975-PA 2..428 179..604 656 33.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21699-PA 616 GK21699-PA 9..612 30..629 1831 56 Plus
Dwil\GK10867-PA 842 GK10867-PA 272..832 47..605 1136 40.1 Plus
Dwil\GK11883-PA 622 GK11883-PA 54..597 68..609 1016 36.9 Plus
Dwil\GK21603-PA 801 GK21603-PA 258..790 81..613 901 35.6 Plus
Dwil\GK21603-PA 801 GK21603-PA 1..261 224..483 422 35.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14059-PA 638 GE14059-PA 1..638 1..633 2997 87.3 Plus
Dyak\GE24490-PA 768 GE24490-PA 196..768 45..615 1138 39.5 Plus
Dyak\GE23720-PA 617 GE23720-PA 49..588 68..605 1013 36.7 Plus
Dyak\GE14061-PA 602 GE14061-PA 47..572 81..606 839 32.1 Plus
Dyak\GE14060-PA 609 GE14060-PA 55..588 81..613 838 33.5 Plus

GH17657.hyp Sequence

Translation from 103 to 2004

> GH17657.hyp
MQKSPRMSRLSAEKKKKKDDEKKDNAEEELQKNKELKCVSNYDKTEILDY
MPRYMDTFWKMDTRLSGSKVDGLWMLNQSNYNKGLAFTLNERRVLSIHGL
LPVAVRTIDEQAEICSNLLESFTNNVQQYIYLTYLSRRNRRLFYYLLLSN
PDRFVPMTDASGSIDLLMVHRMIHSMGQGLYICIKDLGHVSQILSNWPFR
CVRCLLVSNGASVLSVGDLGVDEMPILFSNLHQNVVYGGIHPAYCLAVML
DVGTNNEELLNDPMYTGLRERRCSEKLYDQLFEEFTLSVMQQYGPRALIL
CKDFEAQKAKKQLELYRERQCIVDVDFQCFAAVALAGVIVCNRLKRVFFS
SNVFLFYGAEAINIGMARLCMVLLKREGLIEMKAREKIWFFDANGLVVLG
RKDIPEELLEFANQRDPILDLVEAIQELKPNILVGGSSLPNTFTPDVLRA
MEKSADQPVIFALSRPLEQTECSAEDAFSYTKGHCIFISGSKLPPLKYAN
KWYQPGHCTSSYLVAGISCGVMLAGFTNIPDEAFCVAAERLASLVWPCDL
EKRNVYPPMRKIQCISLQIAEAIFSYAFGRGLATLYPQPENPMEYIKNSM
YNPEYRMNIVDVYCMQNRSIATTESRKYYTLDI*

GH17657.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7848-PA 633 CG7848-PA 1..633 1..633 3315 100 Plus
Men-PA 759 CG10120-PA 159..759 28..615 1102 38.4 Plus
Men-PB 763 CG10120-PB 163..763 28..615 1102 38.4 Plus
Men-PC 578 CG10120-PC 24..578 62..615 1098 40.3 Plus
Men-b-PA 617 CG5889-PA 49..592 68..609 987 36.4 Plus