Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
GH17676.complete Sequence
1355 bp (1355 high quality bases) assembled on 2002-01-03
GenBank Submission: AY075343
> GH17676.complete
AGGTTGAACGGGTCAAAAATGCTGACGCCTGACTACCGAGTCTCTGAAAA
AGAGAAATGAGTCACGTTGCCACTCTTTTGGCCATTGCAAGCGTATTCAG
TGTCGTTCGGGGTCAACAGCAAGTTATGCCAAAGCCCGTGGCGGAAATCC
CTTCACCGCAGCCTCTGCCCGCGGATTACGTGAAGGGAATACTTAGCCTG
AAGAGCAGTCTGCTGACCAACAAGCAGGCCTTGGGTTACGCCACCAGTCA
GGAGGTGAACGGCCCCGCTTCCGTATCCGGAATCAGACCTGGTATGCGAT
ATACACAGCAGTTGGACGTACAGCAGACGCAAAGCCAGCCGTTGCAGGAG
ATTCAGGTTGAACCCGTTGCCAATCTGAGGCCATCAGCGATAGCTCAGAG
CAGCCTTCAATCCCAGATGCCGTCGGCCAAGTTGAATCGATATAACCAGG
AGTTCCCCGCCTTTCATCTATTCCAGCCGCCATTTGTGCCATTGCCAAAG
CAGCAGGAACGACAGGAGACACACGATCCGGCGCCAACTGCCGAGCAGCT
CGAGTTGCTGCAACAGTTGTCCGAGTTCTTTGGCCAGCGACAGCAGATGC
AACAACAGGTGCGACCGCAGGAGGCAATGAATTGCGCTGAAGTGGATCAA
AATGAGGGAAAAGGAGAATGCGAAGCGTTTGCGACTACCGAGGCTTGTGA
CTCCAATAAAAATGAAGAGGAGGATTCGATATCCGTCGATGTTAAGAACG
AGGAGCGGGAATCTACAACAACAAGCACTGTTAAACCATCTTTGGCTCCA
AAAACGAAGGCAACTAAGCCTCCAATCGGCAAGACTACCACCCAAAAACC
TTTGACAACGCGTGCTACCAAAAGTACGACAAGAAAACTTCCATGTTGCA
CCAAGCCAAAGAATCACGGTGTCGCTGGGACTCCAAATGTCATCAGCTTT
TCTCTGAATGTACAAAATGAAAATATGGAACAGCCAAAGTCTTTGCAACA
GCAACCTCGAAGTGGTAGACACGCCATTCAGCCTGATTTGCGCATAAATG
CCATTACAAACATGTTAAGATATCGCAGAAAAAGGGCTCAGGCTGTAGCT
CCATATCCCAAACCCTTTTCTTCACAAAAGGATCATGAATTGCAGTTGCA
GAGCCGATCGAAACGAAAAAGAGATAGGATCCTGGACAAAAAGCAACTGC
TTCAGGCTGAACTGAAGATTTGGCCGATTAGCATAAGATCTAATTCGGTG
TAACGATTGCAATAAGTTCACAATATTCATATATTTTTTTAATGCAATGA
TTAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
GH17676.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:34:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33278-RA | 1324 | CG33278-RA | 2..1315 | 2..1315 | 6570 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:47:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 7442970..7444275 | 2..1307 | 6395 | 99.3 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:56:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:47:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7450854..7452167 | 2..1315 | 6570 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:02:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 7443954..7445267 | 2..1315 | 6570 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-15 14:47:19 has no hits.
GH17676.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:48:27 Download gff for
GH17676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 7442969..7444267 | 1..1299 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:47:08 Download gff for
GH17676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33278-RA | 1..1197 | 57..1253 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:56:47 Download gff for
GH17676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33278-RA | 1..1197 | 57..1253 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:41:36 Download gff for
GH17676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33278-RA | 1..1197 | 57..1253 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:21:36 Download gff for
GH17676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33278-RA | 1..1197 | 57..1253 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:08:12 Download gff for
GH17676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33278-RA | 1..1197 | 57..1253 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:21:09 Download gff for
GH17676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33278-RA | 2..1307 | 2..1307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:56:47 Download gff for
GH17676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33278-RA | 2..1307 | 2..1307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:41:36 Download gff for
GH17676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33278-RA | 2..1307 | 2..1307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:21:36 Download gff for
GH17676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33278-RA | 2..1307 | 2..1307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:08:12 Download gff for
GH17676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33278-RA | 2..1307 | 2..1307 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:48:27 Download gff for
GH17676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7450853..7452159 | 1..1307 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:48:27 Download gff for
GH17676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7450853..7452159 | 1..1307 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:48:27 Download gff for
GH17676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7450853..7452159 | 1..1307 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:41:36 Download gff for
GH17676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7443953..7445259 | 1..1307 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:56:24 Download gff for
GH17676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7443953..7445259 | 1..1307 | 99 | | Plus |
GH17676.pep Sequence
Translation from 56 to 1252
> GH17676.pep
MSHVATLLAIASVFSVVRGQQQVMPKPVAEIPSPQPLPADYVKGILSLKS
SLLTNKQALGYATSQEVNGPASVSGIRPGMRYTQQLDVQQTQSQPLQEIQ
VEPVANLRPSAIAQSSLQSQMPSAKLNRYNQEFPAFHLFQPPFVPLPKQQ
ERQETHDPAPTAEQLELLQQLSEFFGQRQQMQQQVRPQEAMNCAEVDQNE
GKGECEAFATTEACDSNKNEEEDSISVDVKNEERESTTTSTVKPSLAPKT
KATKPPIGKTTTQKPLTTRATKSTTRKLPCCTKPKNHGVAGTPNVISFSL
NVQNENMEQPKSLQQQPRSGRHAIQPDLRINAITNMLRYRRKRAQAVAPY
PKPFSSQKDHELQLQSRSKRKRDRILDKKQLLQAELKIWPISIRSNSV*
GH17676.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:59:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF10645-PA | 395 | GF10645-PA | 3..388 | 35..396 | 651 | 43.3 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:59:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG14427-PA | 396 | GG14427-PA | 1..392 | 1..398 | 1420 | 76.3 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33278-PA | 398 | CG33278-PA | 1..398 | 1..398 | 2032 | 100 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:59:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL26451-PA | 404 | GL26451-PA | 32..398 | 29..395 | 221 | 30.9 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:59:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA23672-PA | 404 | GA23672-PA | 32..398 | 29..395 | 224 | 30.7 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:59:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM14844-PA | 399 | GM14844-PA | 1..395 | 1..398 | 1810 | 91 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:59:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD14017-PA | 401 | GD14017-PA | 1..395 | 1..396 | 1831 | 91.7 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:00:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK19283-PA | 356 | GK19283-PA | 55..350 | 103..393 | 340 | 36.5 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:00:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE21618-PA | 409 | GE21618-PA | 1..405 | 1..398 | 1550 | 78.6 | Plus |
GH17676.hyp Sequence
Translation from 56 to 1252
> GH17676.hyp
MSHVATLLAIASVFSVVRGQQQVMPKPVAEIPSPQPLPADYVKGILSLKS
SLLTNKQALGYATSQEVNGPASVSGIRPGMRYTQQLDVQQTQSQPLQEIQ
VEPVANLRPSAIAQSSLQSQMPSAKLNRYNQEFPAFHLFQPPFVPLPKQQ
ERQETHDPAPTAEQLELLQQLSEFFGQRQQMQQQVRPQEAMNCAEVDQNE
GKGECEAFATTEACDSNKNEEEDSISVDVKNEERESTTTSTVKPSLAPKT
KATKPPIGKTTTQKPLTTRATKSTTRKLPCCTKPKNHGVAGTPNVISFSL
NVQNENMEQPKSLQQQPRSGRHAIQPDLRINAITNMLRYRRKRAQAVAPY
PKPFSSQKDHELQLQSRSKRKRDRILDKKQLLQAELKIWPISIRSNSV*
GH17676.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:52:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33278-PA | 398 | CG33278-PA | 1..398 | 1..398 | 2032 | 100 | Plus |