Clone GH17676 Report

Search the DGRC for GH17676

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:176
Well:76
Vector:pOT2
Associated Gene/TranscriptCG33278-RA
Protein status:GH17676.pep: gold
Preliminary Size:1513
Sequenced Size:1355

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18656 2001-01-01 Release 2 assignment
CG33278 2002-01-03 Blastp of sequenced clone
CG18656 2003-01-01 Sim4 clustering to Release 3
CG33278 2008-04-29 Release 5.5 accounting
CG33278 2008-08-15 Release 5.9 accounting
CG33278 2008-12-18 5.12 accounting

Clone Sequence Records

GH17676.complete Sequence

1355 bp (1355 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075343

> GH17676.complete
AGGTTGAACGGGTCAAAAATGCTGACGCCTGACTACCGAGTCTCTGAAAA
AGAGAAATGAGTCACGTTGCCACTCTTTTGGCCATTGCAAGCGTATTCAG
TGTCGTTCGGGGTCAACAGCAAGTTATGCCAAAGCCCGTGGCGGAAATCC
CTTCACCGCAGCCTCTGCCCGCGGATTACGTGAAGGGAATACTTAGCCTG
AAGAGCAGTCTGCTGACCAACAAGCAGGCCTTGGGTTACGCCACCAGTCA
GGAGGTGAACGGCCCCGCTTCCGTATCCGGAATCAGACCTGGTATGCGAT
ATACACAGCAGTTGGACGTACAGCAGACGCAAAGCCAGCCGTTGCAGGAG
ATTCAGGTTGAACCCGTTGCCAATCTGAGGCCATCAGCGATAGCTCAGAG
CAGCCTTCAATCCCAGATGCCGTCGGCCAAGTTGAATCGATATAACCAGG
AGTTCCCCGCCTTTCATCTATTCCAGCCGCCATTTGTGCCATTGCCAAAG
CAGCAGGAACGACAGGAGACACACGATCCGGCGCCAACTGCCGAGCAGCT
CGAGTTGCTGCAACAGTTGTCCGAGTTCTTTGGCCAGCGACAGCAGATGC
AACAACAGGTGCGACCGCAGGAGGCAATGAATTGCGCTGAAGTGGATCAA
AATGAGGGAAAAGGAGAATGCGAAGCGTTTGCGACTACCGAGGCTTGTGA
CTCCAATAAAAATGAAGAGGAGGATTCGATATCCGTCGATGTTAAGAACG
AGGAGCGGGAATCTACAACAACAAGCACTGTTAAACCATCTTTGGCTCCA
AAAACGAAGGCAACTAAGCCTCCAATCGGCAAGACTACCACCCAAAAACC
TTTGACAACGCGTGCTACCAAAAGTACGACAAGAAAACTTCCATGTTGCA
CCAAGCCAAAGAATCACGGTGTCGCTGGGACTCCAAATGTCATCAGCTTT
TCTCTGAATGTACAAAATGAAAATATGGAACAGCCAAAGTCTTTGCAACA
GCAACCTCGAAGTGGTAGACACGCCATTCAGCCTGATTTGCGCATAAATG
CCATTACAAACATGTTAAGATATCGCAGAAAAAGGGCTCAGGCTGTAGCT
CCATATCCCAAACCCTTTTCTTCACAAAAGGATCATGAATTGCAGTTGCA
GAGCCGATCGAAACGAAAAAGAGATAGGATCCTGGACAAAAAGCAACTGC
TTCAGGCTGAACTGAAGATTTGGCCGATTAGCATAAGATCTAATTCGGTG
TAACGATTGCAATAAGTTCACAATATTCATATATTTTTTTAATGCAATGA
TTAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA

GH17676.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG33278-RA 1324 CG33278-RA 2..1315 2..1315 6570 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 7442970..7444275 2..1307 6395 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:56:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7450854..7452167 2..1315 6570 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 7443954..7445267 2..1315 6570 100 Plus
Blast to na_te.dros performed on 2019-03-15 14:47:19 has no hits.

GH17676.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:48:27 Download gff for GH17676.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 7442969..7444267 1..1299 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:47:08 Download gff for GH17676.complete
Subject Subject Range Query Range Percent Splice Strand
CG33278-RA 1..1197 57..1253 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:56:47 Download gff for GH17676.complete
Subject Subject Range Query Range Percent Splice Strand
CG33278-RA 1..1197 57..1253 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:41:36 Download gff for GH17676.complete
Subject Subject Range Query Range Percent Splice Strand
CG33278-RA 1..1197 57..1253 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:21:36 Download gff for GH17676.complete
Subject Subject Range Query Range Percent Splice Strand
CG33278-RA 1..1197 57..1253 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:08:12 Download gff for GH17676.complete
Subject Subject Range Query Range Percent Splice Strand
CG33278-RA 1..1197 57..1253 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:21:09 Download gff for GH17676.complete
Subject Subject Range Query Range Percent Splice Strand
CG33278-RA 2..1307 2..1307 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:56:47 Download gff for GH17676.complete
Subject Subject Range Query Range Percent Splice Strand
CG33278-RA 2..1307 2..1307 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:41:36 Download gff for GH17676.complete
Subject Subject Range Query Range Percent Splice Strand
CG33278-RA 2..1307 2..1307 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:21:36 Download gff for GH17676.complete
Subject Subject Range Query Range Percent Splice Strand
CG33278-RA 2..1307 2..1307 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:08:12 Download gff for GH17676.complete
Subject Subject Range Query Range Percent Splice Strand
CG33278-RA 2..1307 2..1307 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:48:27 Download gff for GH17676.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7450853..7452159 1..1307 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:48:27 Download gff for GH17676.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7450853..7452159 1..1307 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:48:27 Download gff for GH17676.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7450853..7452159 1..1307 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:41:36 Download gff for GH17676.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7443953..7445259 1..1307 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:56:24 Download gff for GH17676.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7443953..7445259 1..1307 99   Plus

GH17676.pep Sequence

Translation from 56 to 1252

> GH17676.pep
MSHVATLLAIASVFSVVRGQQQVMPKPVAEIPSPQPLPADYVKGILSLKS
SLLTNKQALGYATSQEVNGPASVSGIRPGMRYTQQLDVQQTQSQPLQEIQ
VEPVANLRPSAIAQSSLQSQMPSAKLNRYNQEFPAFHLFQPPFVPLPKQQ
ERQETHDPAPTAEQLELLQQLSEFFGQRQQMQQQVRPQEAMNCAEVDQNE
GKGECEAFATTEACDSNKNEEEDSISVDVKNEERESTTTSTVKPSLAPKT
KATKPPIGKTTTQKPLTTRATKSTTRKLPCCTKPKNHGVAGTPNVISFSL
NVQNENMEQPKSLQQQPRSGRHAIQPDLRINAITNMLRYRRKRAQAVAPY
PKPFSSQKDHELQLQSRSKRKRDRILDKKQLLQAELKIWPISIRSNSV*

GH17676.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10645-PA 395 GF10645-PA 3..388 35..396 651 43.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14427-PA 396 GG14427-PA 1..392 1..398 1420 76.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG33278-PA 398 CG33278-PA 1..398 1..398 2032 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26451-PA 404 GL26451-PA 32..398 29..395 221 30.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23672-PA 404 GA23672-PA 32..398 29..395 224 30.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14844-PA 399 GM14844-PA 1..395 1..398 1810 91 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14017-PA 401 GD14017-PA 1..395 1..396 1831 91.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:00:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19283-PA 356 GK19283-PA 55..350 103..393 340 36.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:00:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21618-PA 409 GE21618-PA 1..405 1..398 1550 78.6 Plus

GH17676.hyp Sequence

Translation from 56 to 1252

> GH17676.hyp
MSHVATLLAIASVFSVVRGQQQVMPKPVAEIPSPQPLPADYVKGILSLKS
SLLTNKQALGYATSQEVNGPASVSGIRPGMRYTQQLDVQQTQSQPLQEIQ
VEPVANLRPSAIAQSSLQSQMPSAKLNRYNQEFPAFHLFQPPFVPLPKQQ
ERQETHDPAPTAEQLELLQQLSEFFGQRQQMQQQVRPQEAMNCAEVDQNE
GKGECEAFATTEACDSNKNEEEDSISVDVKNEERESTTTSTVKPSLAPKT
KATKPPIGKTTTQKPLTTRATKSTTRKLPCCTKPKNHGVAGTPNVISFSL
NVQNENMEQPKSLQQQPRSGRHAIQPDLRINAITNMLRYRRKRAQAVAPY
PKPFSSQKDHELQLQSRSKRKRDRILDKKQLLQAELKIWPISIRSNSV*

GH17676.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG33278-PA 398 CG33278-PA 1..398 1..398 2032 100 Plus