Clone GH17801 Report

Search the DGRC for GH17801

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:178
Well:1
Vector:pOT2
Associated Gene/TranscriptCG17660-RA
Protein status:GH17801.pep: gold
Preliminary Size:2260
Sequenced Size:2335

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17660 2001-01-01 Release 2 assignment
CG17660 2001-07-04 Blastp of sequenced clone
CG17660 2003-01-01 Sim4 clustering to Release 3
CG17660 2008-04-29 Release 5.5 accounting
CG17660 2008-08-15 Release 5.9 accounting
CG17660 2008-12-18 5.12 accounting

Clone Sequence Records

GH17801.complete Sequence

2335 bp (2335 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051520

> GH17801.complete
ACGAGTAGAAGAGGAAATAATATTTGTATTTACTTAAGCCCATTGTACGC
ACACACAACTCGAAATGCAGGGATCGGCCACGCTGTTGGTGGTTGCGTTG
GCCTTGCTACTTGGCCCGGCGAGCACGGCCGGGAAATCGGATCCGGGCAT
GGTGGACGTGCTGGTGACCACGGACTTGCCCAGCATCCGGGAGCAGCGTC
CGCTGCTGGCCAACACAAAAATCTACGCGCAGATTAAGGGCTGCACTTCC
AATGTGGAATCGAACCTGACCATTACGTTCCGGCTGACGGAGCACCCCTG
CATCTTTGATGACCGCACGCTGCAGGCCATCGCCCAGAATGCTACCCTGC
AGAAGAACGCCACCATCAATAACGTCATCACCGAGATCACCAGGACATAT
CCCTGCAACGGACTCATCGTCCTGGCGATAAACAAGGACAAGGTGGTCGA
AGGATCAGCGATCCCAACACCGGAGCCAAAGCATCCAATGCTGGAGCACA
AGCACCCACTTTCGCCCACAACGAACCCAATTGCGAGCGTCAAGGAGGAT
GGCATTTACGAAATCGAAGTTAACATCGCGGCGGGCCCATCCGCGCAGTT
CAGTGCCGTGGTGCACATAGAGTTCCTGGGCCCACACGGCTTCATCTCGG
CCATAGATTGGCCATTCCTGCCGTTCTATCTGATCATGTGCATTGTTTAC
GTGATATTTGGAATTATTTGGCTGTTTGTTTCTTTCGCGCAATGGCGGGA
TCTTTTGAGAATTCAATTCTGGATCGGTGGCGTCATACTGCTGGGAATGC
TAGAGAAGGCCTTCTTCTACGCCGAATACCAAACGCTGACGAACAAGGGT
GTTGCAGTTCAGCACGCCGAACTGGTGGCCGAGTTTGTGTCCTGTGCGAA
GCGCACGCTGGCCAGGATGCTGGTCATCATCATGAGTCTCGGCTTTGGCA
TTGTCAAACCCCGTTTGGGACCCATGCTGCATCGCGTGGTGGGCGTGGGA
ACCCTCTACTTTGTGCTGGCCTGCGTGGAGAGCTACTTGCGTATCACCAA
TGTGAAGACCGATCGCAGCGAGCTGCTGGTGGCGAGCATTCCACTGGCGG
TGCTGGACACAGGAATATGCTGGTGGATATTCACCTCGCTCGTGCAGACA
ACTCGCACTCTCCGACTGAGGAGGAATATGGTCAAGCTCTCACTGTACAG
GCACTTCACCAACACGCTGATCTTCGCTGTTATCGCTTCCGTCATATTCA
TGCTGTTTGCTTTGCGTTTGCGTAGGGTCGAGAATTGCACGCCTGGCTGG
CGCGACATTTGGGTGGATACTGGCTTTTGGCACATTTTGTTTTCGGTTCT
GCTGCTGGTGATTATGATTCTATGGCGACCGACGAATAACAACCAGCGCT
ATGCCTTCACTCCGCTGCTGGATAACCCGGAAGACGAAGACGATGAGGAC
GAGGAGGATCAGTTCGTCGCGGATGCCTACGGCGTGAAAATGCGCGGCCA
GAATGGAACGCCGAAAACGTCGACGACTTCACGAAATGCCACGACCACCG
AGGAAGACGACCTGCGCTGGGTGGAGGAGAACATACCGTCTTCGATGGCG
GACTCGGCGTTGCCCATCCTGGACTCCGATGAGGAAATCATCAACACCAA
GTTCGAGGTGTCGAAAATGCAATAAGCTGTGACTTTCGCTGGACCGAAGA
GACTTTTTACGCATATTTTTGCACATTTTCACGCAACCGTGTCTCCCGCC
AGCAGCTATGTATTTTTTAGTTCTATCCGCCATTGAGGAGGAAAACCCCT
TATTGCTGCGCTGCGCTGACACTGATCTTCCAATTTCGAGAACCGTCTGT
CCGGCCACGCCTTCTGAGCCCGTGTAAAATAATGTATGTAATCGTAGTTC
CTTCTACGCGCACGTCCTCCCCCCCTCTAAATAAACCTAACTTATTCATA
ATACCTAGCCTAAGTTGTAGATACCTATGCGACGATCCGAGAACTTAATT
TAAAAACTTCGACTTGAATTCTTGTGCTGCTGCCCCTAACTACACTCGCA
AAGGTGTATGAGTGAGCTGTTGGTGGTCGCCTCATTGTATGTATATAGCT
GGTAACACAAGACGAAACGATCTATATAAATCTACGAGTATATTCTGTAA
TAACTATGATAAAACGCGACTATGCAAAGATTAAAAGTAATTGTCTAAGT
AAGCACACAATCGTTTGCGTCACACACCTCAAGGTATTTAATTACATATT
TTTAATCAAACGGTCTCCGATTTTCATAAATAAATGCAAACGTATCTTAA
AGGTAGCCATGAACCAAAAAAAAAAAAAAAAAAAA

GH17801.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17660-RA 2484 CG17660-RA 83..2400 1..2318 11590 100 Plus
CG17660.b 2345 CG17660.b 37..2345 1..2315 11460 99.7 Plus
CG17660.a 2276 CG17660.a 37..1919 1..1883 9415 100 Plus
CG17660.a 2276 CG17660.a 1920..2276 1959..2315 1785 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1706992..1707858 2315..1448 4185 99.1 Minus
chr2L 23010047 chr2L 1708680..1708964 957..673 1410 99.6 Minus
chr2L 23010047 chr2L 1708320..1708536 1174..958 1070 99.5 Minus
chr2L 23010047 chr2L 1709484..1709679 514..319 980 100 Minus
chr2L 23010047 chr2L 1710068..1710240 173..1 820 98.3 Minus
chr2L 23010047 chr2L 1709033..1709192 673..514 800 100 Minus
chr2L 23010047 chr2L 1707920..1708073 1448..1295 755 99.4 Minus
chr2L 23010047 chr2L 1708140..1708263 1295..1172 620 100 Minus
chr2L 23010047 chr2L 1709739..1709824 319..234 430 100 Minus
chr2L 23010047 chr2L 1709899..1709965 238..172 290 95.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:57:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1707129..1707999 2318..1448 4355 100 Minus
2L 23513712 2L 1708821..1709105 957..673 1425 100 Minus
2L 23513712 2L 1708461..1708677 1174..958 1085 100 Minus
2L 23513712 2L 1709617..1709812 514..319 980 100 Minus
2L 23513712 2L 1710207..1710379 173..1 865 100 Minus
2L 23513712 2L 1709174..1709333 673..514 800 100 Minus
2L 23513712 2L 1708061..1708214 1448..1295 770 100 Minus
2L 23513712 2L 1708281..1708404 1295..1172 620 100 Minus
2L 23513712 2L 1709878..1709963 319..234 430 100 Minus
2L 23513712 2L 1710038..1710104 238..172 320 98.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1707129..1707999 2318..1448 4355 100 Minus
2L 23513712 2L 1708821..1709105 957..673 1425 100 Minus
2L 23513712 2L 1708461..1708677 1174..958 1085 100 Minus
2L 23513712 2L 1709617..1709812 514..319 980 100 Minus
2L 23513712 2L 1710207..1710379 173..1 865 100 Minus
2L 23513712 2L 1709174..1709333 673..514 800 100 Minus
2L 23513712 2L 1708061..1708214 1448..1295 770 100 Minus
2L 23513712 2L 1708281..1708404 1295..1172 620 100 Minus
2L 23513712 2L 1709878..1709963 319..234 430 100 Minus
2L 23513712 2L 1710038..1710104 238..172 320 98.5 Minus
Blast to na_te.dros performed on 2019-03-16 07:48:13 has no hits.

GH17801.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:49:08 Download gff for GH17801.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1706992..1707857 1449..2315 99 <- Minus
chr2L 1707920..1708073 1295..1448 99 <- Minus
chr2L 1708141..1708261 1174..1294 100 <- Minus
chr2L 1708321..1708536 958..1173 99 <- Minus
chr2L 1708680..1708963 674..957 99 <- Minus
chr2L 1709033..1709191 515..673 100 <- Minus
chr2L 1709484..1709678 320..514 100 <- Minus
chr2L 1709739..1709824 234..319 100 <- Minus
chr2L 1709904..1709964 173..233 96 <- Minus
chr2L 1710069..1710240 1..172 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:47:19 Download gff for GH17801.complete
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 1..1611 65..1675 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:25:49 Download gff for GH17801.complete
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 1..1611 65..1675 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:34:55 Download gff for GH17801.complete
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 1..1611 65..1675 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:58:53 Download gff for GH17801.complete
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 1..1611 65..1675 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:41:51 Download gff for GH17801.complete
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 1..1611 65..1675 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:24:31 Download gff for GH17801.complete
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 37..2351 1..2315 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:25:49 Download gff for GH17801.complete
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 37..2351 1..2315 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:55 Download gff for GH17801.complete
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 43..2357 1..2315 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:58:53 Download gff for GH17801.complete
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 37..2351 1..2315 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:41:51 Download gff for GH17801.complete
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 43..2357 1..2315 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:49:08 Download gff for GH17801.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1707132..1707998 1449..2315 100 <- Minus
2L 1708061..1708214 1295..1448 100 <- Minus
2L 1708282..1708402 1174..1294 100 <- Minus
2L 1708462..1708677 958..1173 100 <- Minus
2L 1708821..1709104 674..957 100 <- Minus
2L 1709174..1709332 515..673 100 <- Minus
2L 1709617..1709811 320..514 100 <- Minus
2L 1709878..1709963 234..319 100 <- Minus
2L 1710043..1710103 173..233 100 <- Minus
2L 1710208..1710379 1..172 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:49:08 Download gff for GH17801.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1707132..1707998 1449..2315 100 <- Minus
2L 1708061..1708214 1295..1448 100 <- Minus
2L 1708282..1708402 1174..1294 100 <- Minus
2L 1708462..1708677 958..1173 100 <- Minus
2L 1708821..1709104 674..957 100 <- Minus
2L 1709174..1709332 515..673 100 <- Minus
2L 1709617..1709811 320..514 100 <- Minus
2L 1709878..1709963 234..319 100 <- Minus
2L 1710043..1710103 173..233 100 <- Minus
2L 1710208..1710379 1..172 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:49:08 Download gff for GH17801.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1707132..1707998 1449..2315 100 <- Minus
2L 1708061..1708214 1295..1448 100 <- Minus
2L 1708282..1708402 1174..1294 100 <- Minus
2L 1708462..1708677 958..1173 100 <- Minus
2L 1708821..1709104 674..957 100 <- Minus
2L 1709174..1709332 515..673 100 <- Minus
2L 1709617..1709811 320..514 100 <- Minus
2L 1709878..1709963 234..319 100 <- Minus
2L 1710043..1710103 173..233 100 <- Minus
2L 1710208..1710379 1..172 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:55 Download gff for GH17801.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1707132..1707998 1449..2315 100 <- Minus
arm_2L 1708061..1708214 1295..1448 100 <- Minus
arm_2L 1708282..1708402 1174..1294 100 <- Minus
arm_2L 1708462..1708677 958..1173 100 <- Minus
arm_2L 1708821..1709104 674..957 100 <- Minus
arm_2L 1709174..1709332 515..673 100 <- Minus
arm_2L 1709617..1709811 320..514 100 <- Minus
arm_2L 1709878..1709963 234..319 100 <- Minus
arm_2L 1710043..1710103 173..233 100 <- Minus
arm_2L 1710208..1710379 1..172 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:36:41 Download gff for GH17801.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1707132..1707998 1449..2315 100 <- Minus
2L 1708061..1708214 1295..1448 100 <- Minus
2L 1708282..1708402 1174..1294 100 <- Minus
2L 1708462..1708677 958..1173 100 <- Minus
2L 1708821..1709104 674..957 100 <- Minus
2L 1709174..1709332 515..673 100 <- Minus
2L 1709617..1709811 320..514 100 <- Minus
2L 1709878..1709963 234..319 100 <- Minus
2L 1710043..1710103 173..233 100 <- Minus
2L 1710208..1710379 1..172 100   Minus

GH17801.pep Sequence

Translation from 64 to 1674

> GH17801.pep
MQGSATLLVVALALLLGPASTAGKSDPGMVDVLVTTDLPSIREQRPLLAN
TKIYAQIKGCTSNVESNLTITFRLTEHPCIFDDRTLQAIAQNATLQKNAT
INNVITEITRTYPCNGLIVLAINKDKVVEGSAIPTPEPKHPMLEHKHPLS
PTTNPIASVKEDGIYEIEVNIAAGPSAQFSAVVHIEFLGPHGFISAIDWP
FLPFYLIMCIVYVIFGIIWLFVSFAQWRDLLRIQFWIGGVILLGMLEKAF
FYAEYQTLTNKGVAVQHAELVAEFVSCAKRTLARMLVIIMSLGFGIVKPR
LGPMLHRVVGVGTLYFVLACVESYLRITNVKTDRSELLVASIPLAVLDTG
ICWWIFTSLVQTTRTLRLRRNMVKLSLYRHFTNTLIFAVIASVIFMLFAL
RLRRVENCTPGWRDIWVDTGFWHILFSVLLLVIMILWRPTNNNQRYAFTP
LLDNPEDEDDEDEEDQFVADAYGVKMRGQNGTPKTSTTSRNATTTEEDDL
RWVEENIPSSMADSALPILDSDEEIINTKFEVSKMQ*

GH17801.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24406-PA 537 GF24406-PA 22..537 22..536 2380 88.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24582-PA 536 GG24582-PA 1..536 1..536 2622 95.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10317-PA 526 GH10317-PA 2..526 5..536 1964 73 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17660-PA 536 CG17660-PA 1..536 1..536 2771 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17078-PA 532 GI17078-PA 20..532 22..536 2015 74.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19345-PA 534 GL19345-PA 1..534 1..536 2369 85.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14601-PA 534 GA14601-PA 1..534 1..536 2376 85.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16601-PA 536 GM16601-PA 1..536 1..536 2813 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22897-PA 536 GD22897-PA 1..536 1..536 2827 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10662-PA 532 GJ10662-PA 7..532 10..536 2045 75.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14938-PA 528 GK14938-PA 1..528 1..536 2088 76.2 Plus
Dwil\GK23457-PA 208 GK23457-PA 112..202 441..530 280 72.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15500-PA 536 GE15500-PA 1..536 1..536 2631 96.1 Plus

GH17801.hyp Sequence

Translation from 64 to 1674

> GH17801.hyp
MQGSATLLVVALALLLGPASTAGKSDPGMVDVLVTTDLPSIREQRPLLAN
TKIYAQIKGCTSNVESNLTITFRLTEHPCIFDDRTLQAIAQNATLQKNAT
INNVITEITRTYPCNGLIVLAINKDKVVEGSAIPTPEPKHPMLEHKHPLS
PTTNPIASVKEDGIYEIEVNIAAGPSAQFSAVVHIEFLGPHGFISAIDWP
FLPFYLIMCIVYVIFGIIWLFVSFAQWRDLLRIQFWIGGVILLGMLEKAF
FYAEYQTLTNKGVAVQHAELVAEFVSCAKRTLARMLVIIMSLGFGIVKPR
LGPMLHRVVGVGTLYFVLACVESYLRITNVKTDRSELLVASIPLAVLDTG
ICWWIFTSLVQTTRTLRLRRNMVKLSLYRHFTNTLIFAVIASVIFMLFAL
RLRRVENCTPGWRDIWVDTGFWHILFSVLLLVIMILWRPTNNNQRYAFTP
LLDNPEDEDDEDEEDQFVADAYGVKMRGQNGTPKTSTTSRNATTTEEDDL
RWVEENIPSSMADSALPILDSDEEIINTKFEVSKMQ*

GH17801.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:53:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG17660-PA 536 CG17660-PA 1..536 1..536 2771 100 Plus