Clone GH17891 Report

Search the DGRC for GH17891

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:178
Well:91
Vector:pOT2
Associated Gene/TranscriptPrat2-RB
Protein status:GH17891.pep: gold
Preliminary Size:2096
Sequenced Size:1929

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10078 2001-01-01 Release 2 assignment
CG10078 2002-04-04 Blastp of sequenced clone
CG10078 2003-01-01 Sim4 clustering to Release 3
Prat2 2008-04-29 Release 5.5 accounting
Prat2 2008-08-15 Release 5.9 accounting
Prat2 2008-12-18 5.12 accounting

Clone Sequence Records

GH17891.complete Sequence

1929 bp (1929 high quality bases) assembled on 2002-04-04

GenBank Submission: AY095010

> GH17891.complete
CAATCAATGCAGACGTGAACAATTCCAGTAGTGACCGAGTGTTCGACTTA
GCCAGCGATCTCGTGCAAAGTGTACAGTGTCTCAATCGTAGTCAATACCA
ATTCTCAACCAAGAAAATCGATACTCAAAACATACGTAGAAATAGAAGTT
ACTAAAATCCAAGCATATGATGGCGCAAAGTGATTCTGGAAATTGCTGTG
CCAAGCTTAATAAAGATGAGTGCTGCCAGAAGACAAAGGATGTGATCTTG
AGCGGCGTATCTCCCAAAATGTTTCCCGACAAAATCTACAAGTCTGTTCA
ACCCAAAGGAGAGGATGCCACCGGAATGACCTGCGAATGCGGTGTTTTTG
CAGCCATCGCTTGCGGGGATTACCCAACACAACTGGACATAGCACAGATG
ATCTGCCTCGGTCTGGTGGCTCTGCAGCATCGTGGCCAGGAGTCGGCGGG
AATAGTGACCAGTTTGGGCAAGTCCTCCAAGAATTTCAGCGTACACAAGG
GCATGGGCATGATCAACAATCTGTTCAATGACGAGGCGATCAGGAAGTTA
AAGGGTAACCTGGGAATAGGACACACCCGGTATTCCACGGCCGCAGCCTC
GGAAGTTGTGAACTGCCAGCCGTTTGTGGTGCACACTGCCCATGGAGCAC
TGGCCATTGCCCACAATGGTGAGCTAGTGAACTGCGAGTCCCTGAGGAGG
GAGGTCCTGGAGCGAGGAGTGGGCCTGTCTACGCACAGTGACAGTGAACT
TATTGCCCAATCCCTGTGCTGTGCACCAGAGGATGTGTCGGAGCACGATG
GACCCAATTGGCCGGCCAGAATTCGCCATTTCATGACCCTGGCTCCACTC
TCCTACTCCCTGGTCGTGATGCACAAGGATAAGATCTACGCTGTCCGCGA
TTCCTATGGCAATAGACCGCTGTGCTTGGGAAAAATCGTGCCCGTTGATG
CAGGACATGCGAATATCAATGACCAACTGGCCGAGGGTTGGGTGGTCAGT
AGTGAAAGCTGCGGATTCCTCTCCATCGGAGCCAGATATGTTCGCGAGGT
GGAGCCCGGTGAGATCATCGAGCTGTCACGAAATGGTTATAGAACCGTGG
ATATCGTTGAAAGACCGGACTATAAGCGCATGGCATTCTGCATCTTTGAG
TACGTCTACTTTGCCCGCAGTGATTCCATGTTCGAGGGTCAGATGGTTTA
CTCAGCCCGCCTGCAATGTGGTCGCCAGTTGGCCAGGGAATCGCCATTAG
ATGCGGATTTGGTCAGCTCGGTTCCGGAATCGGGCACAGCAGCTGCCCAT
GGTTATGCCAGGGAGTCGGGACTGCCATTCGGGGAAGTTCTCTGCAAGAA
TCGCTATGTGGGCCGCACGTTCATCCAACCCTCGACGAGATTGCGACAGT
TGGGCGTGGCCAAAAAGTTTGGTGCCCTGGCTCAAAATGTCGAGGGCAAG
CGGATCGTGCTAGTCGATGACTCCATAGTGAGGGGAAATACCATTGGACC
GATTATCAAACTCCTGCGAGATGCCGGCGCCACCGAGGTGCACATTCGCA
TTGCCAGTCCTCCGCTGCAATATCCCTGCTACATGGGTATCAATATACCC
ACTCGTGAGGAGCTAATAGCCAACAAATTGAATGCGGATCAGCTGGCGGA
TCACGTGGGTGCGGATAGTCTGGCCTATTTGAGTGTGGAGGGTCTGGTCA
AGGCCGTCCAGATGAACAAGGCCCATGTGAATCCACTCAAAGCTGGCTAC
TGCACCGCTTGCCTAACGGGCGAGTATCCTGGCGGATTGCCGGAGGAGCT
CAGCTGGTAGAATCTCTCAGCAATTATTAATTTCATAGGATTAAGGTAGT
TCTTAGCTTCAGCTTGTATATAAATAAATATATTTAAAATTTCGGGTCTT
TGACCTATCACAAAAAAAAAAAAAAAAAA

GH17891.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:17:33
Subject Length Description Subject Range Query Range Score Percent Strand
Prat2-RB 2177 Prat2-RB 227..2143 1..1917 9585 100 Plus
Prat2-RA 1743 Prat2-RA 209..1743 383..1917 7675 100 Plus
Prat.a 2151 Prat.a 555..894 604..943 545 77.3 Plus
Prat.a 2151 Prat.a 285..485 334..534 450 81.5 Plus
Prat.a 2151 Prat.a 931..1156 980..1205 440 79.6 Plus
Prat.a 2151 Prat.a 1423..1577 1472..1626 325 80.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6904309..6905837 1911..383 7510 99.4 Minus
chr3R 27901430 chr3R 3736114..3737490 1710..334 1860 75.7 Minus
chr3L 24539361 chr3L 6906948..6907162 215..1 970 96.7 Minus
chr3L 24539361 chr3L 6906721..6906889 382..214 830 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:57:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:11:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6911993..6913527 1917..383 7675 100 Minus
3R 32079331 3R 7910078..7911454 1710..334 1830 75.5 Minus
3L 28110227 3L 6914641..6914855 215..1 1075 100 Minus
3L 28110227 3L 6914414..6914582 382..214 845 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6905093..6906627 1917..383 7675 100 Minus
3L 28103327 3L 6907741..6907955 215..1 1075 100 Minus
3L 28103327 3L 6907514..6907682 382..214 845 100 Minus
3R 31820162 3R 7651676..7652015 943..604 545 77.3 Minus
3R 31820162 3R 7652085..7652285 534..334 450 81.5 Minus
3R 31820162 3R 7651414..7651639 1205..980 440 79.6 Minus
3R 31820162 3R 7650993..7651147 1626..1472 325 80.6 Minus
Blast to na_te.dros performed on 2019-03-16 00:11:12 has no hits.

GH17891.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:11:56 Download gff for GH17891.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6906948..6907162 1..215 96   Minus
chr3L 6904309..6905837 383..1911 97 <- Minus
chr3L 6906721..6906887 216..382 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:47:20 Download gff for GH17891.complete
Subject Subject Range Query Range Percent Splice Strand
Prat2-RB 1..1644 167..1810 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:18:53 Download gff for GH17891.complete
Subject Subject Range Query Range Percent Splice Strand
Prat2-RB 1..1644 167..1810 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:48:51 Download gff for GH17891.complete
Subject Subject Range Query Range Percent Splice Strand
Prat2-RB 1..1644 167..1810 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:58:06 Download gff for GH17891.complete
Subject Subject Range Query Range Percent Splice Strand
Prat2-RB 1..1644 167..1810 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:00:35 Download gff for GH17891.complete
Subject Subject Range Query Range Percent Splice Strand
Prat2-RB 1..1644 167..1810 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:47:39 Download gff for GH17891.complete
Subject Subject Range Query Range Percent Splice Strand
Prat2-RB 4..1914 1..1911 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:18:53 Download gff for GH17891.complete
Subject Subject Range Query Range Percent Splice Strand
Prat2-RB 4..1914 1..1911 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:48:51 Download gff for GH17891.complete
Subject Subject Range Query Range Percent Splice Strand
Prat2-RB 22..1932 1..1911 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:58:06 Download gff for GH17891.complete
Subject Subject Range Query Range Percent Splice Strand
Prat2-RB 4..1914 1..1911 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:00:35 Download gff for GH17891.complete
Subject Subject Range Query Range Percent Splice Strand
Prat2-RB 22..1932 1..1911 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:11:56 Download gff for GH17891.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6911999..6913527 383..1911 100 <- Minus
3L 6914414..6914580 216..382 100 <- Minus
3L 6914641..6914855 1..215 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:11:56 Download gff for GH17891.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6911999..6913527 383..1911 100 <- Minus
3L 6914414..6914580 216..382 100 <- Minus
3L 6914641..6914855 1..215 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:11:56 Download gff for GH17891.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6911999..6913527 383..1911 100 <- Minus
3L 6914414..6914580 216..382 100 <- Minus
3L 6914641..6914855 1..215 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:48:51 Download gff for GH17891.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6905099..6906627 383..1911 100 <- Minus
arm_3L 6907514..6907680 216..382 100 <- Minus
arm_3L 6907741..6907955 1..215 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:30:41 Download gff for GH17891.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6907741..6907955 1..215 100   Minus
3L 6905099..6906627 383..1911 100 <- Minus
3L 6907514..6907680 216..382 100 <- Minus

GH17891.pep Sequence

Translation from 166 to 1809

> GH17891.pep
MMAQSDSGNCCAKLNKDECCQKTKDVILSGVSPKMFPDKIYKSVQPKGED
ATGMTCECGVFAAIACGDYPTQLDIAQMICLGLVALQHRGQESAGIVTSL
GKSSKNFSVHKGMGMINNLFNDEAIRKLKGNLGIGHTRYSTAAASEVVNC
QPFVVHTAHGALAIAHNGELVNCESLRREVLERGVGLSTHSDSELIAQSL
CCAPEDVSEHDGPNWPARIRHFMTLAPLSYSLVVMHKDKIYAVRDSYGNR
PLCLGKIVPVDAGHANINDQLAEGWVVSSESCGFLSIGARYVREVEPGEI
IELSRNGYRTVDIVERPDYKRMAFCIFEYVYFARSDSMFEGQMVYSARLQ
CGRQLARESPLDADLVSSVPESGTAAAHGYARESGLPFGEVLCKNRYVGR
TFIQPSTRLRQLGVAKKFGALAQNVEGKRIVLVDDSIVRGNTIGPIIKLL
RDAGATEVHIRIASPPLQYPCYMGINIPTREELIANKLNADQLADHVGAD
SLAYLSVEGLVKAVQMNKAHVNPLKAGYCTACLTGEYPGGLPEELSW*

GH17891.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10885-PA 544 GF10885-PA 2..544 4..547 2770 95.2 Plus
Dana\GF16846-PA 546 GF16846-PA 44..546 49..547 2281 83.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15019-PA 546 GG15019-PA 1..546 2..547 2913 99.1 Plus
Dere\GG24862-PA 543 GG24862-PA 42..543 49..547 2266 83.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16106-PA 546 GH16106-PA 1..546 2..547 2692 91.6 Plus
Dgri\GH19023-PA 542 GH19023-PA 42..542 47..547 2253 83.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
Prat2-PB 547 CG10078-PB 1..547 1..547 2865 100 Plus
Prat2-PA 470 CG10078-PA 1..470 78..547 2446 100 Plus
Prat-PB 546 CG2867-PB 45..546 49..547 2212 83.5 Plus
Prat-PA 546 CG2867-PA 45..546 49..547 2212 83.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12370-PA 546 GI12370-PA 1..546 2..547 2717 92.1 Plus
Dmoj\GI22836-PA 543 GI22836-PA 43..543 47..547 2261 83.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12141-PA 415 GL12141-PA 38..415 47..422 1646 79.3 Plus
Dper\GL13231-PA 699 GL13231-PA 1..296 2..298 1450 90.4 Plus
Dper\GL12142-PA 84 GL12142-PA 1..84 473..547 292 70.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10055-PA 545 GA10055-PA 1..545 2..547 2737 93.3 Plus
Dpse\GA15494-PB 509 GA15494-PB 2..509 49..547 2266 82.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13811-PA 547 GM13811-PA 1..547 1..547 2909 98.7 Plus
Dsec\GM10447-PA 547 GM10447-PA 46..547 49..547 2281 83.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13106-PA 547 GD13106-PA 1..547 1..547 2916 99.1 Plus
Dsim\GD19452-PA 547 GD19452-PA 44..547 49..547 2213 81.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Prat2-PA 543 GJ12264-PA 1..543 2..547 2719 92.9 Plus
Dvir\Prat-PA 544 GJ24696-PA 44..544 47..547 2254 83.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12572-PA 636 GK12572-PA 123..636 34..547 2704 96.7 Plus
Dwil\GK11050-PA 542 GK11050-PA 39..542 49..547 2246 81.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20462-PA 546 GE20462-PA 1..546 2..547 2924 99.6 Plus
Dyak\GE25762-PA 543 GE25762-PA 42..543 49..547 2278 83.5 Plus

GH17891.hyp Sequence

Translation from 166 to 1809

> GH17891.hyp
MMAQSDSGNCCAKLNKDECCQKTKDVILSGVSPKMFPDKIYKSVQPKGED
ATGMTCECGVFAAIACGDYPTQLDIAQMICLGLVALQHRGQESAGIVTSL
GKSSKNFSVHKGMGMINNLFNDEAIRKLKGNLGIGHTRYSTAAASEVVNC
QPFVVHTAHGALAIAHNGELVNCESLRREVLERGVGLSTHSDSELIAQSL
CCAPEDVSEHDGPNWPARIRHFMTLAPLSYSLVVMHKDKIYAVRDSYGNR
PLCLGKIVPVDAGHANINDQLAEGWVVSSESCGFLSIGARYVREVEPGEI
IELSRNGYRTVDIVERPDYKRMAFCIFEYVYFARSDSMFEGQMVYSARLQ
CGRQLARESPLDADLVSSVPESGTAAAHGYARESGLPFGEVLCKNRYVGR
TFIQPSTRLRQLGVAKKFGALAQNVEGKRIVLVDDSIVRGNTIGPIIKLL
RDAGATEVHIRIASPPLQYPCYMGINIPTREELIANKLNADQLADHVGAD
SLAYLSVEGLVKAVQMNKAHVNPLKAGYCTACLTGEYPGGLPEELSW*

GH17891.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:53:43
Subject Length Description Subject Range Query Range Score Percent Strand
Prat2-PB 547 CG10078-PB 1..547 1..547 2865 100 Plus
Prat2-PA 470 CG10078-PA 1..470 78..547 2446 100 Plus
Prat-PB 546 CG2867-PB 45..546 49..547 2212 83.5 Plus
Prat-PA 546 CG2867-PA 45..546 49..547 2212 83.5 Plus