Clone GH17930 Report

Search the DGRC for GH17930

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:179
Well:30
Vector:pOT2
Associated Gene/TranscriptCG30350-RA
Protein status:GH17930.pep: gold
Preliminary Size:1408
Sequenced Size:1340

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30350 2001-07-04 Blastp of sequenced clone
CG30350 2003-01-01 Sim4 clustering to Release 3
CG30350 2008-04-29 Release 5.5 accounting
CG30350 2008-08-15 Release 5.9 accounting
CG30350 2008-12-18 5.12 accounting

Clone Sequence Records

GH17930.complete Sequence

1340 bp (1340 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051522

> GH17930.complete
GTTAACAATTCCAAGTGGAAAATTCTCGATTTAGCTGCTAGTTTTATTTA
TTGATAAAGGTCTTTTCGCCCAATTTAAATGGCTGATTTCCCGATGTGTG
TGACCCCGTCGCAGCGAGAGTTGGCTCAGCTCACGGAGCAGGAGCGCCTG
ACCGCCCAGCTGAAGGTAAAGGAGCGCAAGAAGGCGGCCAAGGCCAAGCC
GAAGAAGATCCTGGGCGGCCTGCTTATGGTGAATCACATGAAGATGTGGC
ACCAGCACCGTGAGCGGATCAAGGGGGCGATCAGCACGGTGGACGCCGAA
GCGCCCAACTTTCAGGCGGCCCGCATCACCGGAGTGAACAACCTCCGAGA
CGAGGCGCAAACATTTATGAAGCGCACCAAGGCCAACATCCAGCTGCTGG
TGGAGATTTCGCGGACGATGCGCACCCACGGAGCCATCAATCCGTTTCGA
TACGATACGGTGCACGCCGTCTCCAGTATTCCCATGGCCCTGCTCACCCT
GGAGAAACTGGAGCGCGATAATCGCGACTTCGGTCGACGCATTCTGGAGG
TAAACAGCGAAGTGGACTCCGGTCTGTCGGACAAGCGGATGCGGGAGGGC
AGGAGCTCGACGCCCGTCGCTCCACTGGAGTTGCCGCCCCAAGCAATGGC
CAAGTACGAGGCCTTCAACATCCCGCTACCCAAGTCGGATGCCGAACTAC
GCCGCCTCTTTCGACCGCGTATCTACTTTGACCTCTATCTCAAAGATGCC
CGACCACTGGGCAGGTTTGTGGTCCAGCTGTACACAGAGGCTGCTCCGCT
GGTGGTGCTGCAGCTGATCAAGTCCTGCATGTGCAATCAGCACTCGAAGT
TTATGGTCAAACGACTGTTCCCCAATCTCTGGCTGGAAACCGATTTGATG
CTGTCGTCGGACTCGCTACTCCACCAGCCATTGGAGTACGACGCCAAAGT
TATTGACCACGGGGCCTCCAGCTACGTATTATCCTTCAGCAAAGCTTACG
TCACGGGATTCACCCACCACCTGTCCTTCGCCATCTCGTTCAAGCCGCTT
ACCGTGGTCAATGGATCCCGCGTGGGATTCGGACGGATTGTGAAGGGCAG
CAAGATATGCGAGTGCATTCAGAGTTACGGCACTAAGAACGGAAAGCTCA
GCCGGGGTCTGCTTTTTACCAGCTGCGGATTGCTGTAGCCCGCAGGTGGT
TCCTATAAATTGTTCATGTGTGCAGGGAATATTTTTGAGCCATGTAAATC
GTAGTCAGTACTTTTTAAAATCAATCCCTTCACATAGATGGGGCATGTAG
TCAGTATTAAAGTGATGAATTTAAAAAAAAAAAAAAAAAA

GH17930.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:35:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG30350-RA 1373 CG30350-RA 44..1367 1..1324 6605 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4713999..4715320 1..1322 6580 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:57:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8826434..8827757 1..1324 6605 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8827633..8828956 1..1324 6605 99.9 Plus
Blast to na_te.dros performed on 2019-03-16 09:39:19 has no hits.

GH17930.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:39:59 Download gff for GH17930.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4713999..4715320 1..1322 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:47:24 Download gff for GH17930.complete
Subject Subject Range Query Range Percent Splice Strand
CG30350-RA 1..1110 79..1188 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:25:53 Download gff for GH17930.complete
Subject Subject Range Query Range Percent Splice Strand
CG30350-RA 1..1110 79..1188 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:58:38 Download gff for GH17930.complete
Subject Subject Range Query Range Percent Splice Strand
CG30350-RA 1..1110 79..1188 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:58:56 Download gff for GH17930.complete
Subject Subject Range Query Range Percent Splice Strand
CG30350-RA 1..1110 79..1188 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:43:25 Download gff for GH17930.complete
Subject Subject Range Query Range Percent Splice Strand
CG30350-RA 1..1110 79..1188 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:24:36 Download gff for GH17930.complete
Subject Subject Range Query Range Percent Splice Strand
CG30350-RA 44..1365 1..1322 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:25:53 Download gff for GH17930.complete
Subject Subject Range Query Range Percent Splice Strand
CG30350-RA 44..1365 1..1322 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:38 Download gff for GH17930.complete
Subject Subject Range Query Range Percent Splice Strand
CG30350-RA 44..1365 1..1322 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:58:56 Download gff for GH17930.complete
Subject Subject Range Query Range Percent Splice Strand
CG30350-RA 44..1365 1..1322 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:43:25 Download gff for GH17930.complete
Subject Subject Range Query Range Percent Splice Strand
CG30350-RA 44..1365 1..1322 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:39:59 Download gff for GH17930.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8826434..8827755 1..1322 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:39:59 Download gff for GH17930.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8826434..8827755 1..1322 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:39:59 Download gff for GH17930.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8826434..8827755 1..1322 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:38 Download gff for GH17930.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4713939..4715260 1..1322 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:36:45 Download gff for GH17930.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8827633..8828954 1..1322 99   Plus

GH17930.pep Sequence

Translation from 78 to 1187

> GH17930.pep
MADFPMCVTPSQRELAQLTEQERLTAQLKVKERKKAAKAKPKKILGGLLM
VNHMKMWHQHRERIKGAISTVDAEAPNFQAARITGVNNLRDEAQTFMKRT
KANIQLLVEISRTMRTHGAINPFRYDTVHAVSSIPMALLTLEKLERDNRD
FGRRILEVNSEVDSGLSDKRMREGRSSTPVAPLELPPQAMAKYEAFNIPL
PKSDAELRRLFRPRIYFDLYLKDARPLGRFVVQLYTEAAPLVVLQLIKSC
MCNQHSKFMVKRLFPNLWLETDLMLSSDSLLHQPLEYDAKVIDHGASSYV
LSFSKAYVTGFTHHLSFAISFKPLTVVNGSRVGFGRIVKGSKICECIQSY
GTKNGKLSRGLLFTSCGLL*

GH17930.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21208-PA 375 GF21208-PA 33..375 57..369 596 36.7 Plus
Dana\GF13613-PA 402 GF13613-PA 176..402 149..369 303 33.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18786-PA 363 GG18786-PA 38..363 62..369 553 37.4 Plus
Dere\GG22966-PA 404 GG22966-PA 178..404 149..369 304 33.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22509-PA 158 GH22509-PA 1..158 212..369 615 66.5 Plus
Dgri\GH20999-PA 402 GH20999-PA 176..402 149..369 297 32.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG30350-PA 369 CG30350-PA 1..369 1..369 1890 100 Plus
CG15767-PA 370 CG15767-PA 38..370 62..369 542 37.3 Plus
CG32236-PA 385 CG32236-PA 75..385 48..369 301 28.3 Plus
CG3492-PA 404 CG3492-PA 178..404 149..369 291 33.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20637-PA 401 GI20637-PA 83..401 37..369 298 29.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20123-PA 403 GL20123-PA 216..403 184..369 315 35.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15779-PB 377 GA15779-PB 9..377 2..369 1266 64.2 Plus
Dpse\GA16775-PB 397 GA16775-PB 67..397 35..369 407 33.1 Plus
Dpse\GA17477-PA 403 GA17477-PA 216..403 184..369 315 35.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12437-PA 368 GM12437-PA 38..368 62..369 552 37.8 Plus
Dsec\GM11860-PA 404 GM11860-PA 178..404 149..369 303 33.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10604-PA 369 GD10604-PA 1..369 1..369 1957 98.1 Plus
Dsim\GD11858-PA 404 GD11858-PA 178..404 149..369 303 33.3 Plus
Dsim\GD16753-PA 224 GD16753-PA 38..213 62..224 169 28.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21605-PA 402 GJ21605-PA 195..402 166..369 291 34.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25154-PA 353 GK25154-PA 1..353 56..369 622 39.8 Plus
Dwil\GK19683-PA 396 GK19683-PA 170..396 149..369 316 34.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16431-PA 361 GE16431-PA 39..361 63..369 507 37.8 Plus
Dyak\GE14405-PA 404 GE14405-PA 178..404 149..369 295 33.9 Plus

GH17930.hyp Sequence

Translation from 78 to 1187

> GH17930.hyp
MADFPMCVTPSQRELAQLTEQERLTAQLKVKERKKAAKAKPKKILGGLLM
VNHMKMWHQHRERIKGAISTVDAEAPNFQAARITGVNNLRDEAQTFMKRT
KANIQLLVEISRTMRTHGAINPFRYDTVHAVSSIPMALLTLEKLERDNRD
FGRRILEVNSEVDSGLSDKRMREGRSSTPVAPLELPPQAMAKYEAFNIPL
PKSDAELRRLFRPRIYFDLYLKDARPLGRFVVQLYTEAAPLVVLQLIKSC
MCNQHSKFMVKRLFPNLWLETDLMLSSDSLLHQPLEYDAKVIDHGASSYV
LSFSKAYVTGFTHHLSFAISFKPLTVVNGSRVGFGRIVKGSKICECIQSY
GTKNGKLSRGLLFTSCGLL*

GH17930.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG30350-PA 369 CG30350-PA 1..369 1..369 1890 100 Plus
CG15767-PA 370 CG15767-PA 38..370 62..369 542 37.3 Plus
CG32236-PA 385 CG32236-PA 75..385 48..369 301 28.3 Plus
CG3492-PA 404 CG3492-PA 178..404 149..369 291 33.5 Plus