Clone GH17939 Report

Search the DGRC for GH17939

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:179
Well:39
Vector:pOT2
Associated Gene/TranscriptCG4983-RA
Protein status:GH17939.pep: gold
Preliminary Size:1435
Sequenced Size:1334

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4983 2001-01-01 Release 2 assignment
CG4983 2001-07-04 Blastp of sequenced clone
CG4983 2003-01-01 Sim4 clustering to Release 3
CG4983 2008-04-29 Release 5.5 accounting
CG4983 2008-08-15 Release 5.9 accounting
CG4983 2008-12-18 5.12 accounting

Clone Sequence Records

GH17939.complete Sequence

1334 bp (1334 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051523

> GH17939.complete
AATCGAAAAGCCAATCAAAAATTAGAAAAAAATAGTTTGGCTTTCCGACA
CAAACACAAGAAATTACCACATCCTGGCCCATACCTTCTAAAATTTAATC
CGAATCAGGAAATTGCCAACCTGTCTACCCAACATGTTTCCTGATGACTT
CGACGTAGAACCCTTCAATCCATTCAATGTGGGACCACCCAATAGTGGAG
CCCGATCTGAATTCAAAATACCTACATGCGTTACGTATCCGCCACCGGTA
TTCGTACCCAAGTCCGAATATGTACAACCATCAGAGGAGTTGGTTTCCCG
GAAGAGCAACCAAAGTATAGGCAAGTCGACTATCGGCGAGGTGGACATTT
CCAAGGCCATCAATGAAGAGATGGCCGTGGCCAAGAAGCAGGCCGAAGTT
CTCAATGAAAAAGATCGCATTGATGCGGGTGGTGTTTCAACAACGAAGCT
GTCCAAGGTATCTCAATCAAAGGAAGCGGTTTCAAAGGACTCTTTGCGCA
CCCTAATGCCAATAAGGTCAAACCGTCAGGTCAGTGGTGATGGTAGAGCA
AATTCCAAATTATCCATATCACAATTCAGTGCGGCATCCAAGACGAGCTG
CACAAATAAGCAAAGTGAGGGTGACGTGGCCTCAAAGTCTTCGAACATAA
CATTGAAACGATCTGCAATAGGCAACAGTATTTCCTCAAATACCACCCTC
ACTCCGAAGTCAATTTTGAAGTCGAAACATTTCTCAGAAGCAGCCAAAGC
TTCCTCTACCACAATGAAATCAAAAGTTTCAAATAAGCCATCAGAAACTG
GAACGCAGCGCTCCTTCAAATTAAATCCTGCTGACTCAGACTCGAAACAA
TCTCTAAAATCTGCAAAACCAAAGCATTCCGATTTTAAAATGCAAGATAA
GAAGCTGACCAGTTCTCAAGAACAAGCCCCGTCTGTTGTTGCCACAAGTA
ATGCAAGGCAAGACTCTTGGAATGATCGTGTCCCTTCAAAGACCAACAAG
TCAAATGTACTACCTGAATCCAAGGATGGCCCCAGCTATATTCATTCGGA
AGCAGCTTTATCCTACAGACAGTCCTTGAACCAGCAGGCTGCCGAAATGG
CGGATCGCCTAAACGCCGGAAATGAAAACTTTAGGCGTTACAACTCCGTG
GCACGGAATCACTCGATCAAAGTACCTCAAAAACTTACCGATGGGGATCG
TATGACATTTTGGTTCAGCGATGCTGTACTTTCCTAGAAACACATTTCCT
TGACAAACAAATTCTTAGTTCATATTTACTGAGAACTGCTAGCTATTAAA
TAGAAAAATCAAATCGAAAAAAAAAAAAAAAAAA

GH17939.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4983-RA 1544 CG4983-RA 75..1394 1..1320 6600 100 Plus
CG4983.a 1349 CG4983.a 129..1343 106..1320 6075 100 Plus
CG4983.a 1349 CG4983.a 15..123 1..109 545 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 11651352..11652562 106..1316 5920 99.3 Plus
chr2L 23010047 chr2L 11651187..11651295 1..109 545 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:57:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11652627..11653841 106..1320 6075 100 Plus
2L 23513712 2L 11652462..11652570 1..109 545 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11652627..11653841 106..1320 6075 100 Plus
2L 23513712 2L 11652462..11652570 1..109 545 100 Plus
Blast to na_te.dros performed on 2019-03-16 23:25:53 has no hits.

GH17939.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:26:57 Download gff for GH17939.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 11651187..11651294 1..108 100 -> Plus
chr2L 11651355..11652562 109..1316 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:47:26 Download gff for GH17939.complete
Subject Subject Range Query Range Percent Splice Strand
CG4983-RA 1..1104 134..1237 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:25:54 Download gff for GH17939.complete
Subject Subject Range Query Range Percent Splice Strand
CG4983-RA 1..1104 134..1237 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:43:00 Download gff for GH17939.complete
Subject Subject Range Query Range Percent Splice Strand
CG4983-RA 1..1104 134..1237 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:58:57 Download gff for GH17939.complete
Subject Subject Range Query Range Percent Splice Strand
CG4983-RA 1..1104 134..1237 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:49:52 Download gff for GH17939.complete
Subject Subject Range Query Range Percent Splice Strand
CG4983-RA 1..1104 134..1237 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:24:38 Download gff for GH17939.complete
Subject Subject Range Query Range Percent Splice Strand
CG4983-RA 15..1330 1..1316 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:25:54 Download gff for GH17939.complete
Subject Subject Range Query Range Percent Splice Strand
CG4983-RA 15..1330 1..1316 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:00 Download gff for GH17939.complete
Subject Subject Range Query Range Percent Splice Strand
CG4983-RA 15..1330 1..1316 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:58:57 Download gff for GH17939.complete
Subject Subject Range Query Range Percent Splice Strand
CG4983-RA 15..1330 1..1316 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:49:52 Download gff for GH17939.complete
Subject Subject Range Query Range Percent Splice Strand
CG4983-RA 15..1330 1..1316 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:26:57 Download gff for GH17939.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11652462..11652569 1..108 100 -> Plus
2L 11652630..11653837 109..1316 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:26:57 Download gff for GH17939.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11652462..11652569 1..108 100 -> Plus
2L 11652630..11653837 109..1316 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:26:57 Download gff for GH17939.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11652462..11652569 1..108 100 -> Plus
2L 11652630..11653837 109..1316 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:00 Download gff for GH17939.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11652462..11652569 1..108 100 -> Plus
arm_2L 11652630..11653837 109..1316 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:36:47 Download gff for GH17939.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11652630..11653837 109..1316 100   Plus
2L 11652462..11652569 1..108 100 -> Plus

GH17939.pep Sequence

Translation from 133 to 1236

> GH17939.pep
MFPDDFDVEPFNPFNVGPPNSGARSEFKIPTCVTYPPPVFVPKSEYVQPS
EELVSRKSNQSIGKSTIGEVDISKAINEEMAVAKKQAEVLNEKDRIDAGG
VSTTKLSKVSQSKEAVSKDSLRTLMPIRSNRQVSGDGRANSKLSISQFSA
ASKTSCTNKQSEGDVASKSSNITLKRSAIGNSISSNTTLTPKSILKSKHF
SEAAKASSTTMKSKVSNKPSETGTQRSFKLNPADSDSKQSLKSAKPKHSD
FKMQDKKLTSSQEQAPSVVATSNARQDSWNDRVPSKTNKSNVLPESKDGP
SYIHSEAALSYRQSLNQQAAEMADRLNAGNENFRRYNSVARNHSIKVPQK
LTDGDRMTFWFSDAVLS*

GH17939.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14567-PA 356 GF14567-PA 1..356 1..367 654 45 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23729-PA 361 GG23729-PA 1..361 1..367 1468 80.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11368-PA 382 GH11368-PA 1..382 1..367 309 32.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG4983-PB 367 CG4983-PB 1..367 1..367 1846 100 Plus
CG4983-PA 367 CG4983-PA 1..367 1..367 1846 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18072-PA 552 GI18072-PA 1..125 1..128 201 41.8 Plus
Dmoj\GI18071-PA 232 GI18071-PA 1..104 1..100 147 32.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19313-PA 398 GL19313-PA 3..398 5..367 535 39.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18573-PA 398 GA18573-PA 3..398 5..367 530 37.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19150-PA 288 GM19150-PA 1..288 80..367 1397 93.8 Plus
Dsec\GM19139-PA 77 GM19139-PA 1..75 1..75 382 93.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23784-PA 367 GD23784-PA 1..367 1..367 1793 93.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16624-PA 446 GJ16624-PA 1..249 1..259 238 34.5 Plus
Dvir\GJ16613-PA 265 GJ16613-PA 1..160 1..158 156 32 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24361-PA 207 GK24361-PA 6..132 11..128 226 43.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18533-PA 291 GE18533-PA 1..144 1..143 627 83.4 Plus
Dyak\GE18533-PA 291 GE18533-PA 126..291 219..367 548 66.3 Plus

GH17939.hyp Sequence

Translation from 133 to 1236

> GH17939.hyp
MFPDDFDVEPFNPFNVGPPNSGARSEFKIPTCVTYPPPVFVPKSEYVQPS
EELVSRKSNQSIGKSTIGEVDISKAINEEMAVAKKQAEVLNEKDRIDAGG
VSTTKLSKVSQSKEAVSKDSLRTLMPIRSNRQVSGDGRANSKLSISQFSA
ASKTSCTNKQSEGDVASKSSNITLKRSAIGNSISSNTTLTPKSILKSKHF
SEAAKASSTTMKSKVSNKPSETGTQRSFKLNPADSDSKQSLKSAKPKHSD
FKMQDKKLTSSQEQAPSVVATSNARQDSWNDRVPSKTNKSNVLPESKDGP
SYIHSEAALSYRQSLNQQAAEMADRLNAGNENFRRYNSVARNHSIKVPQK
LTDGDRMTFWFSDAVLS*

GH17939.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG4983-PB 367 CG4983-PB 1..367 1..367 1846 100 Plus
CG4983-PA 367 CG4983-PA 1..367 1..367 1846 100 Plus