BDGP Sequence Production Resources |
Search the DGRC for GH17939
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 179 |
Well: | 39 |
Vector: | pOT2 |
Associated Gene/Transcript | CG4983-RA |
Protein status: | GH17939.pep: gold |
Preliminary Size: | 1435 |
Sequenced Size: | 1334 |
Gene | Date | Evidence |
---|---|---|
CG4983 | 2001-01-01 | Release 2 assignment |
CG4983 | 2001-07-04 | Blastp of sequenced clone |
CG4983 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4983 | 2008-04-29 | Release 5.5 accounting |
CG4983 | 2008-08-15 | Release 5.9 accounting |
CG4983 | 2008-12-18 | 5.12 accounting |
1334 bp (1334 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051523
> GH17939.complete AATCGAAAAGCCAATCAAAAATTAGAAAAAAATAGTTTGGCTTTCCGACA CAAACACAAGAAATTACCACATCCTGGCCCATACCTTCTAAAATTTAATC CGAATCAGGAAATTGCCAACCTGTCTACCCAACATGTTTCCTGATGACTT CGACGTAGAACCCTTCAATCCATTCAATGTGGGACCACCCAATAGTGGAG CCCGATCTGAATTCAAAATACCTACATGCGTTACGTATCCGCCACCGGTA TTCGTACCCAAGTCCGAATATGTACAACCATCAGAGGAGTTGGTTTCCCG GAAGAGCAACCAAAGTATAGGCAAGTCGACTATCGGCGAGGTGGACATTT CCAAGGCCATCAATGAAGAGATGGCCGTGGCCAAGAAGCAGGCCGAAGTT CTCAATGAAAAAGATCGCATTGATGCGGGTGGTGTTTCAACAACGAAGCT GTCCAAGGTATCTCAATCAAAGGAAGCGGTTTCAAAGGACTCTTTGCGCA CCCTAATGCCAATAAGGTCAAACCGTCAGGTCAGTGGTGATGGTAGAGCA AATTCCAAATTATCCATATCACAATTCAGTGCGGCATCCAAGACGAGCTG CACAAATAAGCAAAGTGAGGGTGACGTGGCCTCAAAGTCTTCGAACATAA CATTGAAACGATCTGCAATAGGCAACAGTATTTCCTCAAATACCACCCTC ACTCCGAAGTCAATTTTGAAGTCGAAACATTTCTCAGAAGCAGCCAAAGC TTCCTCTACCACAATGAAATCAAAAGTTTCAAATAAGCCATCAGAAACTG GAACGCAGCGCTCCTTCAAATTAAATCCTGCTGACTCAGACTCGAAACAA TCTCTAAAATCTGCAAAACCAAAGCATTCCGATTTTAAAATGCAAGATAA GAAGCTGACCAGTTCTCAAGAACAAGCCCCGTCTGTTGTTGCCACAAGTA ATGCAAGGCAAGACTCTTGGAATGATCGTGTCCCTTCAAAGACCAACAAG TCAAATGTACTACCTGAATCCAAGGATGGCCCCAGCTATATTCATTCGGA AGCAGCTTTATCCTACAGACAGTCCTTGAACCAGCAGGCTGCCGAAATGG CGGATCGCCTAAACGCCGGAAATGAAAACTTTAGGCGTTACAACTCCGTG GCACGGAATCACTCGATCAAAGTACCTCAAAAACTTACCGATGGGGATCG TATGACATTTTGGTTCAGCGATGCTGTACTTTCCTAGAAACACATTTCCT TGACAAACAAATTCTTAGTTCATATTTACTGAGAACTGCTAGCTATTAAA TAGAAAAATCAAATCGAAAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 11651187..11651294 | 1..108 | 100 | -> | Plus |
chr2L | 11651355..11652562 | 109..1316 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4983-RA | 1..1104 | 134..1237 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4983-RA | 1..1104 | 134..1237 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4983-RA | 1..1104 | 134..1237 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4983-RA | 1..1104 | 134..1237 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4983-RA | 1..1104 | 134..1237 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4983-RA | 15..1330 | 1..1316 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4983-RA | 15..1330 | 1..1316 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4983-RA | 15..1330 | 1..1316 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4983-RA | 15..1330 | 1..1316 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4983-RA | 15..1330 | 1..1316 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11652462..11652569 | 1..108 | 100 | -> | Plus |
2L | 11652630..11653837 | 109..1316 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11652462..11652569 | 1..108 | 100 | -> | Plus |
2L | 11652630..11653837 | 109..1316 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11652462..11652569 | 1..108 | 100 | -> | Plus |
2L | 11652630..11653837 | 109..1316 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 11652462..11652569 | 1..108 | 100 | -> | Plus |
arm_2L | 11652630..11653837 | 109..1316 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11652630..11653837 | 109..1316 | 100 | Plus | |
2L | 11652462..11652569 | 1..108 | 100 | -> | Plus |
Translation from 133 to 1236
> GH17939.pep MFPDDFDVEPFNPFNVGPPNSGARSEFKIPTCVTYPPPVFVPKSEYVQPS EELVSRKSNQSIGKSTIGEVDISKAINEEMAVAKKQAEVLNEKDRIDAGG VSTTKLSKVSQSKEAVSKDSLRTLMPIRSNRQVSGDGRANSKLSISQFSA ASKTSCTNKQSEGDVASKSSNITLKRSAIGNSISSNTTLTPKSILKSKHF SEAAKASSTTMKSKVSNKPSETGTQRSFKLNPADSDSKQSLKSAKPKHSD FKMQDKKLTSSQEQAPSVVATSNARQDSWNDRVPSKTNKSNVLPESKDGP SYIHSEAALSYRQSLNQQAAEMADRLNAGNENFRRYNSVARNHSIKVPQK LTDGDRMTFWFSDAVLS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14567-PA | 356 | GF14567-PA | 1..356 | 1..367 | 654 | 45 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23729-PA | 361 | GG23729-PA | 1..361 | 1..367 | 1468 | 80.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11368-PA | 382 | GH11368-PA | 1..382 | 1..367 | 309 | 32.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4983-PB | 367 | CG4983-PB | 1..367 | 1..367 | 1846 | 100 | Plus |
CG4983-PA | 367 | CG4983-PA | 1..367 | 1..367 | 1846 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18072-PA | 552 | GI18072-PA | 1..125 | 1..128 | 201 | 41.8 | Plus |
Dmoj\GI18071-PA | 232 | GI18071-PA | 1..104 | 1..100 | 147 | 32.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19313-PA | 398 | GL19313-PA | 3..398 | 5..367 | 535 | 39.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18573-PA | 398 | GA18573-PA | 3..398 | 5..367 | 530 | 37.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19150-PA | 288 | GM19150-PA | 1..288 | 80..367 | 1397 | 93.8 | Plus |
Dsec\GM19139-PA | 77 | GM19139-PA | 1..75 | 1..75 | 382 | 93.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23784-PA | 367 | GD23784-PA | 1..367 | 1..367 | 1793 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16624-PA | 446 | GJ16624-PA | 1..249 | 1..259 | 238 | 34.5 | Plus |
Dvir\GJ16613-PA | 265 | GJ16613-PA | 1..160 | 1..158 | 156 | 32 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24361-PA | 207 | GK24361-PA | 6..132 | 11..128 | 226 | 43.8 | Plus |
Translation from 133 to 1236
> GH17939.hyp MFPDDFDVEPFNPFNVGPPNSGARSEFKIPTCVTYPPPVFVPKSEYVQPS EELVSRKSNQSIGKSTIGEVDISKAINEEMAVAKKQAEVLNEKDRIDAGG VSTTKLSKVSQSKEAVSKDSLRTLMPIRSNRQVSGDGRANSKLSISQFSA ASKTSCTNKQSEGDVASKSSNITLKRSAIGNSISSNTTLTPKSILKSKHF SEAAKASSTTMKSKVSNKPSETGTQRSFKLNPADSDSKQSLKSAKPKHSD FKMQDKKLTSSQEQAPSVVATSNARQDSWNDRVPSKTNKSNVLPESKDGP SYIHSEAALSYRQSLNQQAAEMADRLNAGNENFRRYNSVARNHSIKVPQK LTDGDRMTFWFSDAVLS*