Clone GH17972 Report

Search the DGRC for GH17972

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:179
Well:72
Vector:pOT2
Associated Gene/Transcriptalpha4GT1-RA
Protein status:GH17972.pep: gold
Preliminary Size:1834
Sequenced Size:1742

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17223 2001-01-01 Release 2 assignment
CG17223 2001-07-04 Blastp of sequenced clone
CG17223 2003-01-01 Sim4 clustering to Release 3
alpha4GT1 2008-04-29 Release 5.5 accounting
alpha4GT1 2008-08-15 Release 5.9 accounting
alpha4GT1 2008-12-18 5.12 accounting

Clone Sequence Records

GH17972.complete Sequence

1742 bp (1742 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051524

> GH17972.complete
CGGAACGATAACAGCGCTTTTTGTTGTGGTTCTTCGCTGTGTGCCTTTCA
ATTGTTAGAGTTTCCTTGTCGTCGAGGGCGATTAAGGAATACTGCCCAGC
GACGATGTGGCGTACATAGAATCTCTCTGCAGTCATGCTCCTCTGGTTGC
CCATTGCGGTGGCACGCAGGATGTTCATCATCCTCGTCCTAATGGTAATT
GGAGGCCTCTTCTACATCTACACTTCGGAAAATAAATACCACTCATGCTT
TATGGAGGGCCAAGTACTGGCAACTCAGCAGGCGCTAACTGCAGATGGCG
AAACAAATCTATTGGGCGACGTCCTCCAGGCGGATCCCAAACCCTCGCCC
GGAAACAGTATCTTCTTTCACGAGACCAGCTGCCGCCTATCCGAGAACAG
ACAGCTGGAGACGCTGAAGGTCACTGCCCGCCAGGCATGCGCAATCGAGT
CGGCAGCGATGCATAATCCGAATTTCCAAGTGTTCGTCCTGTTCGCTGGC
CCCACCTATCGAATCTCCAACAACAAAAGCCATCCCCAACCATTGTTGGA
GGCCATTCTCAGTTACAGCAATGTCCATCTACGTCGACTGAATCTCGAGA
GTTACGCATCTGGCACGCCCATGGAGGAGTGGCTCAAAGATGGTCGTTTG
TCGCGGTCAAAATATTTGTTCTCGCACATATCAGACTTTCTCCGCTACCT
TACCCTCTATCGGTATGGCGGTCTTTATCTGGACATGGATGTGGTGGTGC
TTCGCAACATGGAGAAGGTGCCGCCCAATTACACAGGTGCTGAGTCCAAC
ACCCATTTGGCAGCTGGCGTAATGAACCTGGCAGCCACTGGCTTTGGCCA
CGAGATCGCCGCGTCCTGTTTGCGCGACTTTCAGCACAACTTTAACGGCG
GGGACTGGGGCAACAATGGCCCAGGGGTGATAACCCGTGTGGCTCAGAAG
ATATGTGGCACCAAAGACATTGCTCTGATGCGAGAGGACCCCAAGCGCTG
CATGGGCTTCAAAGTATTCGGACGGGGCGCCTTTTACGCCGTACCGTGGA
AGCAGTGGCGAGACTTCTTTGAGCCGGAAAACTTAGAAGAGACAATCGCC
CGGTGCAAGGACTCGTATGTAGTGCATGTGTGGAATAAGCACTCGAGCAA
GCTGCCTATCAAAATAGGATCTAAGAACGCCTACGCCTTGTATGCCGAAC
AAAATTGCCCGAGATCGTACAAGGCTGCTGGCGAATACTTCTAGTATCAG
AAGGGTTATCAAGCTCTTATCATTTGTATATGAATGTTTACCGCTGCAAG
CCAAAGTCGTCGCCCTGCAAAGGGGCCATTGCTAAATGTATCCCTACCTA
TTTGCTGTCATCCTGTTGGCATTAAGTTTCATTGTCATTCCAAGCGATGT
CAGCTTACTCAAACGCACATCCGCAGCACAGTTCAAGTCAAATGGAATGG
TTTTTTATTTTGCGATAAGCTTTACCTCTCCGATTGCACATTATATATAT
GTATTTAAATACTGATTGTGAATATAATTCGATAATATAAGCAAGCGAAC
AACTCACATAGACATTTATTGAAAGCTGTAAAAGTCGCTTAGAATACTAT
TTTGAATCATTGTAGTTTGTCTTAACTAAGTTCGAATAAGTTGAAGAATT
TTGTACATACTATTTATCCAGGGAATGTTACTATCAACCTACAAATAAAA
TAGAAGTATTTAAGTCATCACAAAAAAAAAAAAAAAAAAAAA

GH17972.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
alpha4GT1-RA 1767 alpha4GT1-RA 47..1767 1..1721 8605 100 Plus
CG17264-RA 2734 CG17264-RA 2534..2734 1724..1524 1005 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 3020949..3022007 1721..662 5130 99.2 Minus
chr2L 23010047 chr2L 3022062..3022602 661..121 2660 99.4 Minus
chr2L 23010047 chr2L 3022668..3022787 120..1 585 99.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:57:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3021306..3022368 1724..662 5315 100 Minus
2L 23513712 2L 3022423..3022963 661..121 2705 100 Minus
2L 23513712 2L 3023029..3023148 120..1 600 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3021306..3022368 1724..662 5315 100 Minus
2L 23513712 2L 3022423..3022963 661..121 2705 100 Minus
2L 23513712 2L 3023029..3023148 120..1 600 100 Minus
Blast to na_te.dros performed on 2019-03-15 21:34:33 has no hits.

GH17972.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:35:39 Download gff for GH17972.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 3020949..3022007 662..1721 99 <- Minus
chr2L 3022062..3022602 121..661 99 <- Minus
chr2L 3022668..3022787 1..120 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:47:29 Download gff for GH17972.complete
Subject Subject Range Query Range Percent Splice Strand
alpha4GT1-RA 1..1110 135..1244 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:25:44 Download gff for GH17972.complete
Subject Subject Range Query Range Percent Splice Strand
alpha4GT1-RA 1..1110 135..1244 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:52:17 Download gff for GH17972.complete
Subject Subject Range Query Range Percent Splice Strand
alpha4GT1-RA 1..1110 135..1244 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:58:47 Download gff for GH17972.complete
Subject Subject Range Query Range Percent Splice Strand
alpha4GT1-RA 1..1110 135..1244 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:57:15 Download gff for GH17972.complete
Subject Subject Range Query Range Percent Splice Strand
alpha4GT1-RA 1..1110 135..1244 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:24:24 Download gff for GH17972.complete
Subject Subject Range Query Range Percent Splice Strand
alpha4GT1-RA 1..1721 1..1721 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:25:44 Download gff for GH17972.complete
Subject Subject Range Query Range Percent Splice Strand
alpha4GT1-RA 22..1742 1..1721 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:52:17 Download gff for GH17972.complete
Subject Subject Range Query Range Percent Splice Strand
alpha4GT1-RA 1..1714 8..1721 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:58:48 Download gff for GH17972.complete
Subject Subject Range Query Range Percent Splice Strand
alpha4GT1-RA 1..1721 1..1721 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:15 Download gff for GH17972.complete
Subject Subject Range Query Range Percent Splice Strand
alpha4GT1-RA 1..1714 8..1721 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:35:39 Download gff for GH17972.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3021309..3022368 662..1721 100 <- Minus
2L 3022423..3022963 121..661 100 <- Minus
2L 3023029..3023148 1..120 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:35:39 Download gff for GH17972.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3021309..3022368 662..1721 100 <- Minus
2L 3022423..3022963 121..661 100 <- Minus
2L 3023029..3023148 1..120 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:35:39 Download gff for GH17972.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3021309..3022368 662..1721 100 <- Minus
2L 3022423..3022963 121..661 100 <- Minus
2L 3023029..3023148 1..120 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:52:17 Download gff for GH17972.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3021309..3022368 662..1721 100 <- Minus
arm_2L 3022423..3022963 121..661 100 <- Minus
arm_2L 3023029..3023148 1..120 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:36:35 Download gff for GH17972.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3021309..3022368 662..1721 100 <- Minus
2L 3022423..3022963 121..661 100 <- Minus
2L 3023029..3023148 1..120 100   Minus

GH17972.pep Sequence

Translation from 134 to 1243

> GH17972.pep
MLLWLPIAVARRMFIILVLMVIGGLFYIYTSENKYHSCFMEGQVLATQQA
LTADGETNLLGDVLQADPKPSPGNSIFFHETSCRLSENRQLETLKVTARQ
ACAIESAAMHNPNFQVFVLFAGPTYRISNNKSHPQPLLEAILSYSNVHLR
RLNLESYASGTPMEEWLKDGRLSRSKYLFSHISDFLRYLTLYRYGGLYLD
MDVVVLRNMEKVPPNYTGAESNTHLAAGVMNLAATGFGHEIAASCLRDFQ
HNFNGGDWGNNGPGVITRVAQKICGTKDIALMREDPKRCMGFKVFGRGAF
YAVPWKQWRDFFEPENLEETIARCKDSYVVHVWNKHSSKLPIKIGSKNAY
ALYAEQNCPRSYKAAGEYF*

GH17972.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14753-PA 379 GF14753-PA 1..379 1..369 1454 72.6 Plus
Dana\GF19918-PA 347 GF19918-PA 10..344 16..366 869 49.3 Plus
Dana\GF16775-PA 371 GF16775-PA 67..371 60..369 862 51.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24467-PA 369 GG24467-PA 1..369 1..369 1877 92.4 Plus
Dere\GG11427-PA 325 GG11427-PA 21..325 60..369 902 53.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13059-PA 394 GH13059-PA 1..394 1..369 1338 64 Plus
Dgri\GH13060-PA 371 GH13060-PA 41..371 40..369 1087 61.4 Plus
Dgri\GH10340-PA 355 GH10340-PA 46..355 60..369 889 51.9 Plus
Dgri\GH10342-PA 274 GH10342-PA 1..274 94..369 771 51.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
alpha4GT1-PA 369 CG17223-PA 1..369 1..369 1966 100 Plus
alpha4GT2-PB 395 CG5878-PB 93..395 62..369 886 53.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17680-PA 395 GI17680-PA 37..395 29..369 1242 65.7 Plus
Dmoj\GI21127-PA 347 GI21127-PA 40..347 59..369 845 50.2 Plus
Dmoj\GI17430-PA 367 GI17430-PA 59..367 58..369 838 49.7 Plus
Dmoj\GI21138-PA 347 GI21138-PA 40..347 59..369 823 48.6 Plus
Dmoj\GI21086-PA 274 GI21086-PA 1..274 94..369 779 51.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19577-PA 384 GL19577-PA 20..384 11..369 1468 73.7 Plus
Dper\GL19576-PA 350 GL19576-PA 32..350 56..369 1207 69.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14400-PA 384 GA14400-PA 20..384 11..369 1468 73.7 Plus
Dpse\GA26016-PA 350 GA26016-PA 32..350 56..369 1212 70.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18175-PA 369 GM18175-PA 1..369 1..369 1916 95.7 Plus
Dsec\GM10267-PA 400 GM10267-PA 96..400 60..369 912 54.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11999-PA 369 GD11999-PA 1..369 1..369 1912 95.4 Plus
Dsim\GD21237-PA 400 GD21237-PA 96..400 60..369 931 54.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17463-PA 392 GJ17463-PA 37..392 29..369 1273 67.7 Plus
Dvir\GJ17465-PA 378 GJ17465-PA 16..378 9..369 1067 54 Plus
Dvir\GJ17464-PA 379 GJ17464-PA 17..379 12..369 1066 54.9 Plus
Dvir\GJ22668-PA 360 GJ22668-PA 2..359 1..369 834 44.2 Plus
Dvir\GJ10928-PA 379 GJ10928-PA 34..378 14..369 807 48.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15176-PA 386 GK15176-PA 47..386 38..369 1230 66.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14957-PA 369 GE14957-PA 1..369 1..369 1873 92.7 Plus
Dyak\GE23622-PA 399 GE23622-PA 95..399 60..369 894 54 Plus

GH17972.hyp Sequence

Translation from 134 to 1243

> GH17972.hyp
MLLWLPIAVARRMFIILVLMVIGGLFYIYTSENKYHSCFMEGQVLATQQA
LTADGETNLLGDVLQADPKPSPGNSIFFHETSCRLSENRQLETLKVTARQ
ACAIESAAMHNPNFQVFVLFAGPTYRISNNKSHPQPLLEAILSYSNVHLR
RLNLESYASGTPMEEWLKDGRLSRSKYLFSHISDFLRYLTLYRYGGLYLD
MDVVVLRNMEKVPPNYTGAESNTHLAAGVMNLAATGFGHEIAASCLRDFQ
HNFNGGDWGNNGPGVITRVAQKICGTKDIALMREDPKRCMGFKVFGRGAF
YAVPWKQWRDFFEPENLEETIARCKDSYVVHVWNKHSSKLPIKIGSKNAY
ALYAEQNCPRSYKAAGEYF*

GH17972.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
alpha4GT1-PA 369 CG17223-PA 1..369 1..369 1966 100 Plus
alpha4GT2-PB 395 CG5878-PB 93..395 62..369 886 53.9 Plus