BDGP Sequence Production Resources |
Search the DGRC for GH17972
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 179 |
Well: | 72 |
Vector: | pOT2 |
Associated Gene/Transcript | alpha4GT1-RA |
Protein status: | GH17972.pep: gold |
Preliminary Size: | 1834 |
Sequenced Size: | 1742 |
Gene | Date | Evidence |
---|---|---|
CG17223 | 2001-01-01 | Release 2 assignment |
CG17223 | 2001-07-04 | Blastp of sequenced clone |
CG17223 | 2003-01-01 | Sim4 clustering to Release 3 |
alpha4GT1 | 2008-04-29 | Release 5.5 accounting |
alpha4GT1 | 2008-08-15 | Release 5.9 accounting |
alpha4GT1 | 2008-12-18 | 5.12 accounting |
1742 bp (1742 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051524
> GH17972.complete CGGAACGATAACAGCGCTTTTTGTTGTGGTTCTTCGCTGTGTGCCTTTCA ATTGTTAGAGTTTCCTTGTCGTCGAGGGCGATTAAGGAATACTGCCCAGC GACGATGTGGCGTACATAGAATCTCTCTGCAGTCATGCTCCTCTGGTTGC CCATTGCGGTGGCACGCAGGATGTTCATCATCCTCGTCCTAATGGTAATT GGAGGCCTCTTCTACATCTACACTTCGGAAAATAAATACCACTCATGCTT TATGGAGGGCCAAGTACTGGCAACTCAGCAGGCGCTAACTGCAGATGGCG AAACAAATCTATTGGGCGACGTCCTCCAGGCGGATCCCAAACCCTCGCCC GGAAACAGTATCTTCTTTCACGAGACCAGCTGCCGCCTATCCGAGAACAG ACAGCTGGAGACGCTGAAGGTCACTGCCCGCCAGGCATGCGCAATCGAGT CGGCAGCGATGCATAATCCGAATTTCCAAGTGTTCGTCCTGTTCGCTGGC CCCACCTATCGAATCTCCAACAACAAAAGCCATCCCCAACCATTGTTGGA GGCCATTCTCAGTTACAGCAATGTCCATCTACGTCGACTGAATCTCGAGA GTTACGCATCTGGCACGCCCATGGAGGAGTGGCTCAAAGATGGTCGTTTG TCGCGGTCAAAATATTTGTTCTCGCACATATCAGACTTTCTCCGCTACCT TACCCTCTATCGGTATGGCGGTCTTTATCTGGACATGGATGTGGTGGTGC TTCGCAACATGGAGAAGGTGCCGCCCAATTACACAGGTGCTGAGTCCAAC ACCCATTTGGCAGCTGGCGTAATGAACCTGGCAGCCACTGGCTTTGGCCA CGAGATCGCCGCGTCCTGTTTGCGCGACTTTCAGCACAACTTTAACGGCG GGGACTGGGGCAACAATGGCCCAGGGGTGATAACCCGTGTGGCTCAGAAG ATATGTGGCACCAAAGACATTGCTCTGATGCGAGAGGACCCCAAGCGCTG CATGGGCTTCAAAGTATTCGGACGGGGCGCCTTTTACGCCGTACCGTGGA AGCAGTGGCGAGACTTCTTTGAGCCGGAAAACTTAGAAGAGACAATCGCC CGGTGCAAGGACTCGTATGTAGTGCATGTGTGGAATAAGCACTCGAGCAA GCTGCCTATCAAAATAGGATCTAAGAACGCCTACGCCTTGTATGCCGAAC AAAATTGCCCGAGATCGTACAAGGCTGCTGGCGAATACTTCTAGTATCAG AAGGGTTATCAAGCTCTTATCATTTGTATATGAATGTTTACCGCTGCAAG CCAAAGTCGTCGCCCTGCAAAGGGGCCATTGCTAAATGTATCCCTACCTA TTTGCTGTCATCCTGTTGGCATTAAGTTTCATTGTCATTCCAAGCGATGT CAGCTTACTCAAACGCACATCCGCAGCACAGTTCAAGTCAAATGGAATGG TTTTTTATTTTGCGATAAGCTTTACCTCTCCGATTGCACATTATATATAT GTATTTAAATACTGATTGTGAATATAATTCGATAATATAAGCAAGCGAAC AACTCACATAGACATTTATTGAAAGCTGTAAAAGTCGCTTAGAATACTAT TTTGAATCATTGTAGTTTGTCTTAACTAAGTTCGAATAAGTTGAAGAATT TTGTACATACTATTTATCCAGGGAATGTTACTATCAACCTACAAATAAAA TAGAAGTATTTAAGTCATCACAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 3020949..3022007 | 1721..662 | 5130 | 99.2 | Minus |
chr2L | 23010047 | chr2L | 3022062..3022602 | 661..121 | 2660 | 99.4 | Minus |
chr2L | 23010047 | chr2L | 3022668..3022787 | 120..1 | 585 | 99.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 3021306..3022368 | 1724..662 | 5315 | 100 | Minus |
2L | 23513712 | 2L | 3022423..3022963 | 661..121 | 2705 | 100 | Minus |
2L | 23513712 | 2L | 3023029..3023148 | 120..1 | 600 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 3020949..3022007 | 662..1721 | 99 | <- | Minus |
chr2L | 3022062..3022602 | 121..661 | 99 | <- | Minus |
chr2L | 3022668..3022787 | 1..120 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
alpha4GT1-RA | 1..1110 | 135..1244 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
alpha4GT1-RA | 1..1110 | 135..1244 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
alpha4GT1-RA | 1..1110 | 135..1244 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
alpha4GT1-RA | 1..1110 | 135..1244 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
alpha4GT1-RA | 1..1110 | 135..1244 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
alpha4GT1-RA | 1..1721 | 1..1721 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
alpha4GT1-RA | 22..1742 | 1..1721 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
alpha4GT1-RA | 1..1714 | 8..1721 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
alpha4GT1-RA | 1..1721 | 1..1721 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
alpha4GT1-RA | 1..1714 | 8..1721 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 3021309..3022368 | 662..1721 | 100 | <- | Minus |
2L | 3022423..3022963 | 121..661 | 100 | <- | Minus |
2L | 3023029..3023148 | 1..120 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 3021309..3022368 | 662..1721 | 100 | <- | Minus |
2L | 3022423..3022963 | 121..661 | 100 | <- | Minus |
2L | 3023029..3023148 | 1..120 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 3021309..3022368 | 662..1721 | 100 | <- | Minus |
2L | 3022423..3022963 | 121..661 | 100 | <- | Minus |
2L | 3023029..3023148 | 1..120 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 3021309..3022368 | 662..1721 | 100 | <- | Minus |
arm_2L | 3022423..3022963 | 121..661 | 100 | <- | Minus |
arm_2L | 3023029..3023148 | 1..120 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 3021309..3022368 | 662..1721 | 100 | <- | Minus |
2L | 3022423..3022963 | 121..661 | 100 | <- | Minus |
2L | 3023029..3023148 | 1..120 | 100 | Minus |
Translation from 134 to 1243
> GH17972.pep MLLWLPIAVARRMFIILVLMVIGGLFYIYTSENKYHSCFMEGQVLATQQA LTADGETNLLGDVLQADPKPSPGNSIFFHETSCRLSENRQLETLKVTARQ ACAIESAAMHNPNFQVFVLFAGPTYRISNNKSHPQPLLEAILSYSNVHLR RLNLESYASGTPMEEWLKDGRLSRSKYLFSHISDFLRYLTLYRYGGLYLD MDVVVLRNMEKVPPNYTGAESNTHLAAGVMNLAATGFGHEIAASCLRDFQ HNFNGGDWGNNGPGVITRVAQKICGTKDIALMREDPKRCMGFKVFGRGAF YAVPWKQWRDFFEPENLEETIARCKDSYVVHVWNKHSSKLPIKIGSKNAY ALYAEQNCPRSYKAAGEYF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14753-PA | 379 | GF14753-PA | 1..379 | 1..369 | 1454 | 72.6 | Plus |
Dana\GF19918-PA | 347 | GF19918-PA | 10..344 | 16..366 | 869 | 49.3 | Plus |
Dana\GF16775-PA | 371 | GF16775-PA | 67..371 | 60..369 | 862 | 51.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24467-PA | 369 | GG24467-PA | 1..369 | 1..369 | 1877 | 92.4 | Plus |
Dere\GG11427-PA | 325 | GG11427-PA | 21..325 | 60..369 | 902 | 53.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13059-PA | 394 | GH13059-PA | 1..394 | 1..369 | 1338 | 64 | Plus |
Dgri\GH13060-PA | 371 | GH13060-PA | 41..371 | 40..369 | 1087 | 61.4 | Plus |
Dgri\GH10340-PA | 355 | GH10340-PA | 46..355 | 60..369 | 889 | 51.9 | Plus |
Dgri\GH10342-PA | 274 | GH10342-PA | 1..274 | 94..369 | 771 | 51.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
alpha4GT1-PA | 369 | CG17223-PA | 1..369 | 1..369 | 1966 | 100 | Plus |
alpha4GT2-PB | 395 | CG5878-PB | 93..395 | 62..369 | 886 | 53.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17680-PA | 395 | GI17680-PA | 37..395 | 29..369 | 1242 | 65.7 | Plus |
Dmoj\GI21127-PA | 347 | GI21127-PA | 40..347 | 59..369 | 845 | 50.2 | Plus |
Dmoj\GI17430-PA | 367 | GI17430-PA | 59..367 | 58..369 | 838 | 49.7 | Plus |
Dmoj\GI21138-PA | 347 | GI21138-PA | 40..347 | 59..369 | 823 | 48.6 | Plus |
Dmoj\GI21086-PA | 274 | GI21086-PA | 1..274 | 94..369 | 779 | 51.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19577-PA | 384 | GL19577-PA | 20..384 | 11..369 | 1468 | 73.7 | Plus |
Dper\GL19576-PA | 350 | GL19576-PA | 32..350 | 56..369 | 1207 | 69.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14400-PA | 384 | GA14400-PA | 20..384 | 11..369 | 1468 | 73.7 | Plus |
Dpse\GA26016-PA | 350 | GA26016-PA | 32..350 | 56..369 | 1212 | 70.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18175-PA | 369 | GM18175-PA | 1..369 | 1..369 | 1916 | 95.7 | Plus |
Dsec\GM10267-PA | 400 | GM10267-PA | 96..400 | 60..369 | 912 | 54.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11999-PA | 369 | GD11999-PA | 1..369 | 1..369 | 1912 | 95.4 | Plus |
Dsim\GD21237-PA | 400 | GD21237-PA | 96..400 | 60..369 | 931 | 54.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17463-PA | 392 | GJ17463-PA | 37..392 | 29..369 | 1273 | 67.7 | Plus |
Dvir\GJ17465-PA | 378 | GJ17465-PA | 16..378 | 9..369 | 1067 | 54 | Plus |
Dvir\GJ17464-PA | 379 | GJ17464-PA | 17..379 | 12..369 | 1066 | 54.9 | Plus |
Dvir\GJ22668-PA | 360 | GJ22668-PA | 2..359 | 1..369 | 834 | 44.2 | Plus |
Dvir\GJ10928-PA | 379 | GJ10928-PA | 34..378 | 14..369 | 807 | 48.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15176-PA | 386 | GK15176-PA | 47..386 | 38..369 | 1230 | 66.8 | Plus |
Translation from 134 to 1243
> GH17972.hyp MLLWLPIAVARRMFIILVLMVIGGLFYIYTSENKYHSCFMEGQVLATQQA LTADGETNLLGDVLQADPKPSPGNSIFFHETSCRLSENRQLETLKVTARQ ACAIESAAMHNPNFQVFVLFAGPTYRISNNKSHPQPLLEAILSYSNVHLR RLNLESYASGTPMEEWLKDGRLSRSKYLFSHISDFLRYLTLYRYGGLYLD MDVVVLRNMEKVPPNYTGAESNTHLAAGVMNLAATGFGHEIAASCLRDFQ HNFNGGDWGNNGPGVITRVAQKICGTKDIALMREDPKRCMGFKVFGRGAF YAVPWKQWRDFFEPENLEETIARCKDSYVVHVWNKHSSKLPIKIGSKNAY ALYAEQNCPRSYKAAGEYF*