![]() | BDGP Sequence Production Resources |
Search the DGRC for GH17980
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 179 |
Well: | 80 |
Vector: | pOT2 |
Associated Gene/Transcript | CG3397-RA |
Protein status: | GH17980.pep: gold |
Preliminary Size: | 1303 |
Sequenced Size: | 1191 |
Gene | Date | Evidence |
---|---|---|
CG3397 | 2001-01-01 | Release 2 assignment |
CG3397 | 2002-05-16 | Blastp of sequenced clone |
CG3397 | 2003-01-01 | Sim4 clustering to Release 3 |
CG3397 | 2008-04-29 | Release 5.5 accounting |
CG3397 | 2008-08-15 | Release 5.9 accounting |
CG3397 | 2008-12-18 | 5.12 accounting |
1191 bp (1191 high quality bases) assembled on 2002-05-16
GenBank Submission: AY118797
> GH17980.complete AGGATGTCGGGATCACTGCCAGCTACTTTCGTCAAGGGTTTCCACGATGA GGAGAAGGTGCGTCGTATGGAGTACCGCCAACTCGGATCCACGGGTCTGC GAGTATCCAAAATTGCTTTGGGTGGTGCCACTCTCTCCAAGCTCTTCTCC GATGACTTCGATCGCGAGGAGGGCATCCTCACGGTGCAGGAAGCCATTAG ATCCGGTATCAACTACATAGACACGGCTCCCTTTTATGGCCAAGGCAAAT CGGAAGAGCTGCTTGGCCAGGCGCTCAAGGATGTGCCCCGGGAGGCCTAT TATATAGCAACTAAAGTTGCACGTTACGAGTTGGATCCAAACAATATGTT CGACTATACGGCTGCCAAGGCTCGGGAGAGTGTGAAGCGTAGTCTGGAGC TGCTCCAGTTGGACAGGGTGGACGTACTACAGGTTCATGACGTGGATGCG GCACCTAGTCTGGACATGGTGCTGAATGAGACCATACCCGTCCTCGAGGA GTACGTCCAGGCGGGAAAGGCTCGATTCATCGGAGTCACCGCCTACGATG TGGACGTGCTGAAGGAGTGTGCCGAGCGGGGCAAAGGTCGCATCCAGGTG GTGCTCAACTATGCCCGCTACACCCTGTTGGACAACACTTTGCTGCGCCA CATGAAGGCCTTCCAGGAGATGGGCGTGGGCGTTGTCTGTGCGGCCGCGC ACTCTCTGGGACTCCTAAGCAACGCTGGACCCCAGTCCTGGCATCCTGGT AGTCCGGAACTCCTAGCTGTGGGCAAACGGGGAGCCGAAATCTGTCAGAA GAGGAACGTTGAGCTTGGAAAGCTGGCCATGTACTATACAATGCAACTGG ATGGGGCGGCCACCTTCCTCATCGGTATCCCCAACCGAAAGCTGCTGCGG ATTAACTTGGACGCGATCTTCGACGGTCTCACTTCCCACGAACAGGAAGT GCTGCAGTATCTGCGCGAAAACGTTTTTACCAAGTCCTACAGTTGGGGCT CCACTTTATCCACGGTTAACATGTTCAAATGAGCGACCACTTGGACGGGC AATCGAACTTGAGCTCCAAGACCAAGAAATCTTTGGTAATGCAGGGAGAA CGGATTTAAAATAAACTTTAGATTATAATATTCACTGAAATAAAATATTA AATGAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3397-RA | 1300 | CG3397-RA | 132..1289 | 1..1158 | 5790 | 100 | Plus |
CG12224.c | 1491 | CG12224.c | 607..1391 | 249..1033 | 2860 | 90.9 | Plus |
CG12224.b | 1579 | CG12224.b | 695..1479 | 249..1033 | 2860 | 90.9 | Plus |
CG12224.c | 1491 | CG12224.c | 372..608 | 1..237 | 750 | 87.7 | Plus |
CG12224.b | 1579 | CG12224.b | 460..696 | 1..237 | 750 | 87.7 | Plus |
CG12224.c | 1491 | CG12224.c | 1394..1468 | 1071..1145 | 240 | 88 | Plus |
CG12224.b | 1579 | CG12224.b | 1482..1556 | 1071..1145 | 240 | 88 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 7808898..7809440 | 971..429 | 2715 | 100 | Minus |
chr3R | 27901430 | chr3R | 7809490..7809923 | 434..1 | 2155 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 7806417..7806959 | 971..429 | 2070 | 92.1 | Minus |
chr3R | 27901430 | chr3R | 7807009..7807436 | 434..1 | 1280 | 86.9 | Minus |
chr3R | 27901430 | chr3R | 7808510..7808695 | 1157..972 | 930 | 100 | Minus |
chr3R | 27901430 | chr3R | 7806121..7806195 | 1145..1071 | 240 | 88 | Minus |
chr3R | 27901430 | chr3R | 7806198..7806259 | 1033..972 | 205 | 88.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 11983486..11984028 | 971..429 | 2715 | 100 | Minus |
3R | 32079331 | 3R | 11984078..11984511 | 434..1 | 2170 | 100 | Minus |
3R | 32079331 | 3R | 11981012..11981554 | 971..429 | 2070 | 92.1 | Minus |
3R | 32079331 | 3R | 11981604..11982024 | 434..1 | 1190 | 85.5 | Minus |
3R | 32079331 | 3R | 11983097..11983283 | 1158..972 | 935 | 100 | Minus |
3R | 32079331 | 3R | 11980793..11980854 | 1033..972 | 205 | 88.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 11724317..11724859 | 971..429 | 2715 | 100 | Minus |
3R | 31820162 | 3R | 11724909..11725342 | 434..1 | 2170 | 100 | Minus |
3R | 31820162 | 3R | 11721843..11722385 | 971..429 | 2070 | 92 | Minus |
3R | 31820162 | 3R | 11723928..11724114 | 1158..972 | 935 | 100 | Minus |
3R | 31820162 | 3R | 11722619..11722855 | 237..1 | 750 | 87.7 | Minus |
3R | 31820162 | 3R | 11722435..11722620 | 434..249 | 615 | 88.7 | Minus |
3R | 31820162 | 3R | 11721547..11721621 | 1145..1071 | 240 | 88 | Minus |
3R | 31820162 | 3R | 11721624..11721685 | 1033..972 | 205 | 88.7 | Minus |
3R | 31820162 | 3R | 11720678..11720799 | 329..208 | 175 | 76.2 | Minus |
3R | 31820162 | 3R | 11721092..11721145 | 87..34 | 165 | 87 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 7808510..7808695 | 972..1157 | 100 | <- | Minus |
chr3R | 7808898..7809436 | 433..971 | 100 | <- | Minus |
chr3R | 7809492..7809923 | 1..432 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3397-RA | 1..1029 | 4..1032 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3397-RA | 1..1029 | 4..1032 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3397-RA | 1..1029 | 4..1032 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3397-RA | 1..1029 | 4..1032 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3397-RA | 1..1029 | 4..1032 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3397-RA | 31..1187 | 1..1157 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3397-RA | 31..1187 | 1..1157 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3397-RA | 31..1187 | 1..1157 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3397-RA | 31..1187 | 1..1157 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3397-RA | 31..1187 | 1..1157 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11984080..11984511 | 1..432 | 100 | Minus | |
3R | 11983098..11983283 | 972..1157 | 100 | <- | Minus |
3R | 11983486..11984024 | 433..971 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11984080..11984511 | 1..432 | 100 | Minus | |
3R | 11983098..11983283 | 972..1157 | 100 | <- | Minus |
3R | 11983486..11984024 | 433..971 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11984080..11984511 | 1..432 | 100 | Minus | |
3R | 11983098..11983283 | 972..1157 | 100 | <- | Minus |
3R | 11983486..11984024 | 433..971 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 7809802..7810233 | 1..432 | 100 | Minus | |
arm_3R | 7808820..7809005 | 972..1157 | 100 | <- | Minus |
arm_3R | 7809208..7809746 | 433..971 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11724317..11724855 | 433..971 | 100 | <- | Minus |
3R | 11724911..11725342 | 1..432 | 100 | Minus | |
3R | 11723929..11724114 | 972..1157 | 100 | <- | Minus |
Translation from 0 to 1031
> GH17980.hyp RMSGSLPATFVKGFHDEEKVRRMEYRQLGSTGLRVSKIALGGATLSKLFS DDFDREEGILTVQEAIRSGINYIDTAPFYGQGKSEELLGQALKDVPREAY YIATKVARYELDPNNMFDYTAAKARESVKRSLELLQLDRVDVLQVHDVDA APSLDMVLNETIPVLEEYVQAGKARFIGVTAYDVDVLKECAERGKGRIQV VLNYARYTLLDNTLLRHMKAFQEMGVGVVCAAAHSLGLLSNAGPQSWHPG SPELLAVGKRGAEICQKRNVELGKLAMYYTMQLDGAATFLIGIPNRKLLR INLDAIFDGLTSHEQEVLQYLRENVFTKSYSWGSTLSTVNMFK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3397-PA | 342 | CG3397-PA | 1..342 | 2..343 | 1740 | 100 | Plus |
CG18547-PA | 345 | CG18547-PA | 1..330 | 2..332 | 1083 | 63.3 | Plus |
CG12224-PC | 228 | CG12224-PC | 1..228 | 116..343 | 1055 | 90.8 | Plus |
CG12224-PB | 228 | CG12224-PB | 1..228 | 116..343 | 1055 | 90.8 | Plus |
Translation from 3 to 1031
> GH17980.pep MSGSLPATFVKGFHDEEKVRRMEYRQLGSTGLRVSKIALGGATLSKLFSD DFDREEGILTVQEAIRSGINYIDTAPFYGQGKSEELLGQALKDVPREAYY IATKVARYELDPNNMFDYTAAKARESVKRSLELLQLDRVDVLQVHDVDAA PSLDMVLNETIPVLEEYVQAGKARFIGVTAYDVDVLKECAERGKGRIQVV LNYARYTLLDNTLLRHMKAFQEMGVGVVCAAAHSLGLLSNAGPQSWHPGS PELLAVGKRGAEICQKRNVELGKLAMYYTMQLDGAATFLIGIPNRKLLRI NLDAIFDGLTSHEQEVLQYLRENVFTKSYSWGSTLSTVNMFK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17755-PA | 313 | GF17755-PA | 1..313 | 1..342 | 1414 | 78.7 | Plus |
Dana\GF23185-PA | 345 | GF23185-PA | 1..330 | 1..331 | 1077 | 59 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17172-PA | 313 | GG17172-PA | 1..313 | 1..342 | 1556 | 86.5 | Plus |
Dere\GG17173-PA | 345 | GG17173-PA | 1..330 | 1..331 | 1125 | 63.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12681-PA | 348 | GH12681-PA | 1..329 | 1..331 | 1018 | 58 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3397-PA | 342 | CG3397-PA | 1..342 | 1..342 | 1740 | 100 | Plus |
CG18547-PA | 345 | CG18547-PA | 1..330 | 1..331 | 1083 | 63.3 | Plus |
CG12224-PC | 228 | CG12224-PC | 1..228 | 115..342 | 1055 | 90.8 | Plus |
CG12224-PB | 228 | CG12224-PB | 1..228 | 115..342 | 1055 | 90.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24064-PA | 342 | GI24064-PA | 1..342 | 1..342 | 1485 | 79.2 | Plus |
Dmoj\GI24065-PA | 344 | GI24065-PA | 1..329 | 1..331 | 1135 | 62.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21587-PA | 313 | GL21587-PA | 1..313 | 1..342 | 1423 | 79.2 | Plus |
Dper\GL21588-PA | 225 | GL21588-PA | 1..102 | 1..104 | 420 | 76 | Plus |
Dper\GL21588-PA | 225 | GL21588-PA | 104..210 | 225..331 | 333 | 57 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17424-PB | 340 | GA17424-PB | 1..340 | 1..342 | 1574 | 85.7 | Plus |
Dpse\GA14985-PA | 344 | GA14985-PA | 1..329 | 1..331 | 1133 | 62.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26052-PA | 318 | GM26052-PA | 1..302 | 1..303 | 1019 | 62.8 | Plus |
Dsec\GM26051-PA | 121 | GM26051-PA | 1..49 | 22..70 | 234 | 91.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20614-PA | 342 | GD20614-PA | 1..342 | 1..342 | 1783 | 97.4 | Plus |
Dsim\GD20615-PA | 313 | GD20615-PA | 1..313 | 1..342 | 1436 | 80.4 | Plus |
Dsim\GD20616-PA | 345 | GD20616-PA | 1..330 | 1..331 | 1120 | 63.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23689-PA | 313 | GJ23689-PA | 1..313 | 1..342 | 1327 | 73.1 | Plus |
Dvir\GJ23713-PA | 344 | GJ23713-PA | 1..329 | 1..331 | 1133 | 61.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11669-PA | 342 | GK11669-PA | 1..342 | 1..342 | 1597 | 87.1 | Plus |
Dwil\GK11668-PA | 345 | GK11668-PA | 1..345 | 1..342 | 1415 | 76.8 | Plus |
Dwil\GK11670-PA | 344 | GK11670-PA | 1..329 | 1..331 | 1067 | 58 | Plus |