Clone GH17980 Report

Search the DGRC for GH17980

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:179
Well:80
Vector:pOT2
Associated Gene/TranscriptCG3397-RA
Protein status:GH17980.pep: gold
Preliminary Size:1303
Sequenced Size:1191

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3397 2001-01-01 Release 2 assignment
CG3397 2002-05-16 Blastp of sequenced clone
CG3397 2003-01-01 Sim4 clustering to Release 3
CG3397 2008-04-29 Release 5.5 accounting
CG3397 2008-08-15 Release 5.9 accounting
CG3397 2008-12-18 5.12 accounting

Clone Sequence Records

GH17980.complete Sequence

1191 bp (1191 high quality bases) assembled on 2002-05-16

GenBank Submission: AY118797

> GH17980.complete
AGGATGTCGGGATCACTGCCAGCTACTTTCGTCAAGGGTTTCCACGATGA
GGAGAAGGTGCGTCGTATGGAGTACCGCCAACTCGGATCCACGGGTCTGC
GAGTATCCAAAATTGCTTTGGGTGGTGCCACTCTCTCCAAGCTCTTCTCC
GATGACTTCGATCGCGAGGAGGGCATCCTCACGGTGCAGGAAGCCATTAG
ATCCGGTATCAACTACATAGACACGGCTCCCTTTTATGGCCAAGGCAAAT
CGGAAGAGCTGCTTGGCCAGGCGCTCAAGGATGTGCCCCGGGAGGCCTAT
TATATAGCAACTAAAGTTGCACGTTACGAGTTGGATCCAAACAATATGTT
CGACTATACGGCTGCCAAGGCTCGGGAGAGTGTGAAGCGTAGTCTGGAGC
TGCTCCAGTTGGACAGGGTGGACGTACTACAGGTTCATGACGTGGATGCG
GCACCTAGTCTGGACATGGTGCTGAATGAGACCATACCCGTCCTCGAGGA
GTACGTCCAGGCGGGAAAGGCTCGATTCATCGGAGTCACCGCCTACGATG
TGGACGTGCTGAAGGAGTGTGCCGAGCGGGGCAAAGGTCGCATCCAGGTG
GTGCTCAACTATGCCCGCTACACCCTGTTGGACAACACTTTGCTGCGCCA
CATGAAGGCCTTCCAGGAGATGGGCGTGGGCGTTGTCTGTGCGGCCGCGC
ACTCTCTGGGACTCCTAAGCAACGCTGGACCCCAGTCCTGGCATCCTGGT
AGTCCGGAACTCCTAGCTGTGGGCAAACGGGGAGCCGAAATCTGTCAGAA
GAGGAACGTTGAGCTTGGAAAGCTGGCCATGTACTATACAATGCAACTGG
ATGGGGCGGCCACCTTCCTCATCGGTATCCCCAACCGAAAGCTGCTGCGG
ATTAACTTGGACGCGATCTTCGACGGTCTCACTTCCCACGAACAGGAAGT
GCTGCAGTATCTGCGCGAAAACGTTTTTACCAAGTCCTACAGTTGGGGCT
CCACTTTATCCACGGTTAACATGTTCAAATGAGCGACCACTTGGACGGGC
AATCGAACTTGAGCTCCAAGACCAAGAAATCTTTGGTAATGCAGGGAGAA
CGGATTTAAAATAAACTTTAGATTATAATATTCACTGAAATAAAATATTA
AATGAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH17980.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3397-RA 1300 CG3397-RA 132..1289 1..1158 5790 100 Plus
CG12224.c 1491 CG12224.c 607..1391 249..1033 2860 90.9 Plus
CG12224.b 1579 CG12224.b 695..1479 249..1033 2860 90.9 Plus
CG12224.c 1491 CG12224.c 372..608 1..237 750 87.7 Plus
CG12224.b 1579 CG12224.b 460..696 1..237 750 87.7 Plus
CG12224.c 1491 CG12224.c 1394..1468 1071..1145 240 88 Plus
CG12224.b 1579 CG12224.b 1482..1556 1071..1145 240 88 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7808898..7809440 971..429 2715 100 Minus
chr3R 27901430 chr3R 7809490..7809923 434..1 2155 99.8 Minus
chr3R 27901430 chr3R 7806417..7806959 971..429 2070 92.1 Minus
chr3R 27901430 chr3R 7807009..7807436 434..1 1280 86.9 Minus
chr3R 27901430 chr3R 7808510..7808695 1157..972 930 100 Minus
chr3R 27901430 chr3R 7806121..7806195 1145..1071 240 88 Minus
chr3R 27901430 chr3R 7806198..7806259 1033..972 205 88.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:57:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11983486..11984028 971..429 2715 100 Minus
3R 32079331 3R 11984078..11984511 434..1 2170 100 Minus
3R 32079331 3R 11981012..11981554 971..429 2070 92.1 Minus
3R 32079331 3R 11981604..11982024 434..1 1190 85.5 Minus
3R 32079331 3R 11983097..11983283 1158..972 935 100 Minus
3R 32079331 3R 11980793..11980854 1033..972 205 88.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 11724317..11724859 971..429 2715 100 Minus
3R 31820162 3R 11724909..11725342 434..1 2170 100 Minus
3R 31820162 3R 11721843..11722385 971..429 2070 92 Minus
3R 31820162 3R 11723928..11724114 1158..972 935 100 Minus
3R 31820162 3R 11722619..11722855 237..1 750 87.7 Minus
3R 31820162 3R 11722435..11722620 434..249 615 88.7 Minus
3R 31820162 3R 11721547..11721621 1145..1071 240 88 Minus
3R 31820162 3R 11721624..11721685 1033..972 205 88.7 Minus
3R 31820162 3R 11720678..11720799 329..208 175 76.2 Minus
3R 31820162 3R 11721092..11721145 87..34 165 87 Minus
Blast to na_te.dros performed on 2019-03-15 11:51:06 has no hits.

GH17980.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:51:45 Download gff for GH17980.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7808510..7808695 972..1157 100 <- Minus
chr3R 7808898..7809436 433..971 100 <- Minus
chr3R 7809492..7809923 1..432 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:47:30 Download gff for GH17980.complete
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 1..1029 4..1032 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:50:59 Download gff for GH17980.complete
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 1..1029 4..1032 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:33:53 Download gff for GH17980.complete
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 1..1029 4..1032 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:43:36 Download gff for GH17980.complete
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 1..1029 4..1032 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:44:23 Download gff for GH17980.complete
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 1..1029 4..1032 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:28:31 Download gff for GH17980.complete
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 31..1187 1..1157 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:50:58 Download gff for GH17980.complete
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 31..1187 1..1157 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:33:53 Download gff for GH17980.complete
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 31..1187 1..1157 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:43:36 Download gff for GH17980.complete
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 31..1187 1..1157 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:44:23 Download gff for GH17980.complete
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 31..1187 1..1157 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:51:45 Download gff for GH17980.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11984080..11984511 1..432 100   Minus
3R 11983098..11983283 972..1157 100 <- Minus
3R 11983486..11984024 433..971 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:51:45 Download gff for GH17980.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11984080..11984511 1..432 100   Minus
3R 11983098..11983283 972..1157 100 <- Minus
3R 11983486..11984024 433..971 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:51:45 Download gff for GH17980.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11984080..11984511 1..432 100   Minus
3R 11983098..11983283 972..1157 100 <- Minus
3R 11983486..11984024 433..971 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:33:53 Download gff for GH17980.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7809802..7810233 1..432 100   Minus
arm_3R 7808820..7809005 972..1157 100 <- Minus
arm_3R 7809208..7809746 433..971 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:15:53 Download gff for GH17980.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11724317..11724855 433..971 100 <- Minus
3R 11724911..11725342 1..432 100   Minus
3R 11723929..11724114 972..1157 100 <- Minus

GH17980.hyp Sequence

Translation from 0 to 1031

> GH17980.hyp
RMSGSLPATFVKGFHDEEKVRRMEYRQLGSTGLRVSKIALGGATLSKLFS
DDFDREEGILTVQEAIRSGINYIDTAPFYGQGKSEELLGQALKDVPREAY
YIATKVARYELDPNNMFDYTAAKARESVKRSLELLQLDRVDVLQVHDVDA
APSLDMVLNETIPVLEEYVQAGKARFIGVTAYDVDVLKECAERGKGRIQV
VLNYARYTLLDNTLLRHMKAFQEMGVGVVCAAAHSLGLLSNAGPQSWHPG
SPELLAVGKRGAEICQKRNVELGKLAMYYTMQLDGAATFLIGIPNRKLLR
INLDAIFDGLTSHEQEVLQYLRENVFTKSYSWGSTLSTVNMFK*

GH17980.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3397-PA 342 CG3397-PA 1..342 2..343 1740 100 Plus
CG18547-PA 345 CG18547-PA 1..330 2..332 1083 63.3 Plus
CG12224-PC 228 CG12224-PC 1..228 116..343 1055 90.8 Plus
CG12224-PB 228 CG12224-PB 1..228 116..343 1055 90.8 Plus

GH17980.pep Sequence

Translation from 3 to 1031

> GH17980.pep
MSGSLPATFVKGFHDEEKVRRMEYRQLGSTGLRVSKIALGGATLSKLFSD
DFDREEGILTVQEAIRSGINYIDTAPFYGQGKSEELLGQALKDVPREAYY
IATKVARYELDPNNMFDYTAAKARESVKRSLELLQLDRVDVLQVHDVDAA
PSLDMVLNETIPVLEEYVQAGKARFIGVTAYDVDVLKECAERGKGRIQVV
LNYARYTLLDNTLLRHMKAFQEMGVGVVCAAAHSLGLLSNAGPQSWHPGS
PELLAVGKRGAEICQKRNVELGKLAMYYTMQLDGAATFLIGIPNRKLLRI
NLDAIFDGLTSHEQEVLQYLRENVFTKSYSWGSTLSTVNMFK*

GH17980.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17755-PA 313 GF17755-PA 1..313 1..342 1414 78.7 Plus
Dana\GF23185-PA 345 GF23185-PA 1..330 1..331 1077 59 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17172-PA 313 GG17172-PA 1..313 1..342 1556 86.5 Plus
Dere\GG17173-PA 345 GG17173-PA 1..330 1..331 1125 63.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12681-PA 348 GH12681-PA 1..329 1..331 1018 58 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG3397-PA 342 CG3397-PA 1..342 1..342 1740 100 Plus
CG18547-PA 345 CG18547-PA 1..330 1..331 1083 63.3 Plus
CG12224-PC 228 CG12224-PC 1..228 115..342 1055 90.8 Plus
CG12224-PB 228 CG12224-PB 1..228 115..342 1055 90.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24064-PA 342 GI24064-PA 1..342 1..342 1485 79.2 Plus
Dmoj\GI24065-PA 344 GI24065-PA 1..329 1..331 1135 62.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21587-PA 313 GL21587-PA 1..313 1..342 1423 79.2 Plus
Dper\GL21588-PA 225 GL21588-PA 1..102 1..104 420 76 Plus
Dper\GL21588-PA 225 GL21588-PA 104..210 225..331 333 57 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17424-PB 340 GA17424-PB 1..340 1..342 1574 85.7 Plus
Dpse\GA14985-PA 344 GA14985-PA 1..329 1..331 1133 62.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26052-PA 318 GM26052-PA 1..302 1..303 1019 62.8 Plus
Dsec\GM26051-PA 121 GM26051-PA 1..49 22..70 234 91.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20614-PA 342 GD20614-PA 1..342 1..342 1783 97.4 Plus
Dsim\GD20615-PA 313 GD20615-PA 1..313 1..342 1436 80.4 Plus
Dsim\GD20616-PA 345 GD20616-PA 1..330 1..331 1120 63.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23689-PA 313 GJ23689-PA 1..313 1..342 1327 73.1 Plus
Dvir\GJ23713-PA 344 GJ23713-PA 1..329 1..331 1133 61.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:29:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11669-PA 342 GK11669-PA 1..342 1..342 1597 87.1 Plus
Dwil\GK11668-PA 345 GK11668-PA 1..345 1..342 1415 76.8 Plus
Dwil\GK11670-PA 344 GK11670-PA 1..329 1..331 1067 58 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:29:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24562-PA 313 GE24562-PA 1..313 1..342 1565 87.4 Plus
Dyak\GE24563-PA 345 GE24563-PA 1..330 1..331 1127 63 Plus