Clone GH18014 Report

Search the DGRC for GH18014

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:180
Well:14
Vector:pOT2
Associated Gene/TranscriptDrat-RC
Protein status:GH18014.pep: gold
Preliminary Size:1984
Sequenced Size:1928

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1600 2001-01-01 Release 2 assignment
CG1600 2001-07-04 Blastp of sequenced clone
CG1600 2008-04-29 Release 5.5 accounting
CG1600 2008-08-15 Release 5.9 accounting
CG1600 2008-12-18 5.12 accounting

Clone Sequence Records

GH18014.complete Sequence

1928 bp (1928 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051525

> GH18014.complete
TCAAGTCGTCGGAAAAGCGCCGAGAAGCAATTGCAGCTAAAGAAAAATCT
AGCCAATTCACAAGTAAAAGTGTTAGTCAGTTTGTATAATAAATACACAA
CGCAGTTGAGTTGCAGTAGTGCAAAAAAACAAAAAAAAAAAAAAAGTGAA
AAAATTAACAGAGAACAATTACGAGGACAGCAAAATGCCGGTCGATATAT
GCAGTCAACCGCACAATTTGCTCAGTTCAATGAGTGGAACAACAGATACC
TCGTTGTCGCTGAACTCATTGTCCCTGACTTCCGTTCTGCCGCCAACGGA
TCCCGATCACCATAATCCACACAGTACACACAGTACGCACAACATGAACA
AGCTGTGCCGCCAAGTGTCAATTGAGTCGCCCGGTCCGGGCGCCAAGAAC
TGCGTCTTCAACTTCTTCGTGCCCATCGAGGACACGCCGGCGTTGGGCGC
CCGCATCCGGATCGTTTGCGCCGGAGCCTGCTATCGTCGTCGCGATCGCG
CCAACTCCATCACCAGCATGTCCTCAGTGTCCTCGGAGCTGAGCGACTAC
TGTCCGTCGGTGAACTCGATGTCCTCGCCCGCACACCAGGGCATCCGGGA
GGGCTCCTTCTTTCCCGGCTTCGAGGTGGCCGGCGTCATCGAGTCCCTGG
GCTCGGAGATCACCGAGGCCAACAACCGTGGCCTGCGCATTGGACAGCGC
GTGATCGTCTATCCGTTCGATGAGACCCCAGCCGGCTATGCCGAGCTGCT
GGTCGTGCCGGACCTGAAGCACGTGGTGCCCATTCCCGACAGTCTGCCCA
TGGAGGTGGCCGCCATGCTGCCGACGGGCGCCCTGCTCGCCTGGAATGCC
GTCTTCAAGGCTCAGGCCGTTGTCACACAGATTCTCAGCCAGCGGGCTGC
CACGGAGCCGAAGCGGAAGCCCAAGATCCTCATCGTGGGCACTGGCGGCC
TGGCACTCTGGGCCGTGCGCATCGCCTCCTATCACTTTGCCACAACTGGA
GCCGACAACGTGGACATCACAGTGGCCAGTCTGCGGGACGAGGGCTTCCG
CCTGGCCACAGAAATCAAAAATGTCAGCGTGGTCCAGTGGAACGAATGCC
TGTACGAGCCGCAGCTGATCGAGCGCACCAAGGACGTGTGCGGCGGAGCC
GTGGACGTGGTCATTGACTTTGGCACAACCTCCAGGAGTCTGCACCGCTC
GATGCACTGCTTGTCGAAGGGCGGCGTTGTGCTGATCAGCGACGAGGTGG
CCGAGAAGCTGCTGCCCAAGTTCTCGCGCCTGTCGGAGCAGTACCAGCAG
GAGATCATCGCCATCTCGAACGGCACCGCCGAGCAGCTGGCTGAGCTGGT
GGAGCTGGTAGCCAACAAGAAGATCGAGCCGCCGCCGCACTCCGTCTTCC
CCTGCGAGCAGGCGGCCGAGGTCATCGCCAAGCTGTGCAACTCCGAGATA
CCCGGACGCGCCATCCTCCGTTTCCACGACATTGAGTAGGCGTGGAGGAG
GATATGGTTCCCCATCAAGGCATTAACTCATTTAATATGGATATCTGTTA
GCTGTATTCGGAAGACAACCGACAAAACCGACAAAACAACCTGCAACCTG
CGACACTCTCGAAGCGGATTCAGAAATGTGCTTATTTTGTAGCCGGTCAT
TGTTTTGTAACCTTAATTTTGGACTGCAGACGAACTCCTCGTTTTAATTG
ATTTAGCGTTTTAGGCATTTTTAGTATTATGTACATATAGATTGTGATTT
ATTTTATTTGTAAGCCACCACCATGATTCTACTTTTGCAAAGTCACCCAT
CACATCGCCATATTAGCCGGAGTCAAAATTCGGCGGCTTCTTCAATGATT
TTCGATTAAGCAAAAAGCCCAGCAGAAGCGGATTACAAAATAAATGTTAT
ACATACTATAAAAAAAAAAAAAAAAAAA

GH18014.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1600-RC 2203 CG1600-RC 89..1998 1..1910 9550 100 Plus
CG1600-RA 2212 CG1600-RA 364..2041 233..1910 8390 100 Plus
CG1600-RB 1863 CG1600-RB 72..1747 235..1910 8380 100 Plus
CG1600-RB 1863 CG1600-RB 1..71 1..71 355 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3413585..3414422 1909..1072 4190 100 Minus
chr2R 21145070 chr2R 3414490..3415325 1071..236 4180 100 Minus
chr2R 21145070 chr2R 3416378..3416611 234..1 1170 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:57:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7526234..7527072 1910..1072 4195 100 Minus
2R 25286936 2R 7527140..7527978 1071..233 4195 100 Minus
2R 25286936 2R 7529028..7529261 234..1 1170 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7528339..7529177 1071..233 4195 100 Minus
2R 25260384 2R 7527433..7528271 1910..1072 4195 100 Minus
2R 25260384 2R 7530227..7530460 234..1 1170 100 Minus
Blast to na_te.dros performed 2019-03-16 01:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 150..207 1764..1709 114 69 Minus

GH18014.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:14:57 Download gff for GH18014.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3413585..3414422 1072..1909 100 <- Minus
chr2R 3414490..3415326 235..1071 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:47:34 Download gff for GH18014.complete
Subject Subject Range Query Range Percent Splice Strand
CG1600-RC 1..1305 185..1489 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:25:46 Download gff for GH18014.complete
Subject Subject Range Query Range Percent Splice Strand
CG1600-RC 1..1305 185..1489 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:04:29 Download gff for GH18014.complete
Subject Subject Range Query Range Percent Splice Strand
Drat-RC 1..1305 185..1489 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:58:49 Download gff for GH18014.complete
Subject Subject Range Query Range Percent Splice Strand
CG1600-RC 1..1305 185..1489 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:28:38 Download gff for GH18014.complete
Subject Subject Range Query Range Percent Splice Strand
Drat-RC 1..1305 185..1489 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:24:26 Download gff for GH18014.complete
Subject Subject Range Query Range Percent Splice Strand
CG1600-RC 25..1933 1..1909 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:25:45 Download gff for GH18014.complete
Subject Subject Range Query Range Percent Splice Strand
CG1600-RC 25..1933 1..1909 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:04:29 Download gff for GH18014.complete
Subject Subject Range Query Range Percent Splice Strand
Drat-RC 30..1938 1..1909 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:58:49 Download gff for GH18014.complete
Subject Subject Range Query Range Percent Splice Strand
CG1600-RC 25..1933 1..1909 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:28:38 Download gff for GH18014.complete
Subject Subject Range Query Range Percent Splice Strand
Drat-RC 30..1938 1..1909 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:14:57 Download gff for GH18014.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7529028..7529261 1..234 100   Minus
2R 7527140..7527976 235..1071 100 <- Minus
2R 7526235..7527072 1072..1909 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:14:57 Download gff for GH18014.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7529028..7529261 1..234 100   Minus
2R 7527140..7527976 235..1071 100 <- Minus
2R 7526235..7527072 1072..1909 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:14:57 Download gff for GH18014.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7529028..7529261 1..234 100   Minus
2R 7527140..7527976 235..1071 100 <- Minus
2R 7526235..7527072 1072..1909 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:04:29 Download gff for GH18014.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3413740..3414577 1072..1909 100 <- Minus
arm_2R 3414645..3415481 235..1071 100 <- Minus
arm_2R 3416533..3416766 1..234 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:36:37 Download gff for GH18014.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7530227..7530460 1..234 100   Minus
2R 7527434..7528271 1072..1909 100 <- Minus
2R 7528339..7529175 235..1071 100 <- Minus

GH18014.pep Sequence

Translation from 184 to 1488

> GH18014.pep
MPVDICSQPHNLLSSMSGTTDTSLSLNSLSLTSVLPPTDPDHHNPHSTHS
THNMNKLCRQVSIESPGPGAKNCVFNFFVPIEDTPALGARIRIVCAGACY
RRRDRANSITSMSSVSSELSDYCPSVNSMSSPAHQGIREGSFFPGFEVAG
VIESLGSEITEANNRGLRIGQRVIVYPFDETPAGYAELLVVPDLKHVVPI
PDSLPMEVAAMLPTGALLAWNAVFKAQAVVTQILSQRAATEPKRKPKILI
VGTGGLALWAVRIASYHFATTGADNVDITVASLRDEGFRLATEIKNVSVV
QWNECLYEPQLIERTKDVCGGAVDVVIDFGTTSRSLHRSMHCLSKGGVVL
ISDEVAEKLLPKFSRLSEQYQQEIIAISNGTAEQLAELVELVANKKIEPP
PHSVFPCEQAAEVIAKLCNSEIPGRAILRFHDIE*

GH18014.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11713-PA 434 GF11713-PA 1..434 1..434 2024 94.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10734-PA 429 GG10734-PA 1..429 1..434 2190 96.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19809-PA 432 GH19809-PA 1..432 1..434 1724 81.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
Drat-PC 434 CG1600-PC 1..434 1..434 2235 100 Plus
Drat-PD 381 CG1600-PD 1..381 54..434 1948 100 Plus
Drat-PB 381 CG1600-PB 1..381 54..434 1948 100 Plus
Drat-PA 381 CG1600-PA 1..381 54..434 1948 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19095-PA 429 GI19095-PA 1..429 1..434 1986 88.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20107-PA 410 GL20107-PA 1..410 1..434 1850 88 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14040-PA 428 GA14040-PA 1..428 1..434 1964 91.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20780-PA 431 GM20780-PA 1..431 1..434 2269 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10242-PA 381 GD10242-PA 1..381 54..434 2019 99.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20069-PA 434 GJ20069-PA 1..434 1..434 1837 87.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10697-PA 435 GK10697-PA 1..435 1..434 1841 86 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23849-PA 428 GE23849-PA 1..428 1..434 2240 97.2 Plus

GH18014.hyp Sequence

Translation from 184 to 1488

> GH18014.hyp
MPVDICSQPHNLLSSMSGTTDTSLSLNSLSLTSVLPPTDPDHHNPHSTHS
THNMNKLCRQVSIESPGPGAKNCVFNFFVPIEDTPALGARIRIVCAGACY
RRRDRANSITSMSSVSSELSDYCPSVNSMSSPAHQGIREGSFFPGFEVAG
VIESLGSEITEANNRGLRIGQRVIVYPFDETPAGYAELLVVPDLKHVVPI
PDSLPMEVAAMLPTGALLAWNAVFKAQAVVTQILSQRAATEPKRKPKILI
VGTGGLALWAVRIASYHFATTGADNVDITVASLRDEGFRLATEIKNVSVV
QWNECLYEPQLIERTKDVCGGAVDVVIDFGTTSRSLHRSMHCLSKGGVVL
ISDEVAEKLLPKFSRLSEQYQQEIIAISNGTAEQLAELVELVANKKIEPP
PHSVFPCEQAAEVIAKLCNSEIPGRAILRFHDIE*

GH18014.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
Drat-PC 434 CG1600-PC 1..434 1..434 2235 100 Plus
Drat-PD 381 CG1600-PD 1..381 54..434 1948 100 Plus
Drat-PB 381 CG1600-PB 1..381 54..434 1948 100 Plus
Drat-PA 381 CG1600-PA 1..381 54..434 1948 100 Plus