Clone GH18016 Report

Search the DGRC for GH18016

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:180
Well:16
Vector:pOT2
Associated Gene/TranscriptCG3492-RA
Protein status:GH18016.pep: gold
Preliminary Size:1586
Sequenced Size:1535

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3492 2001-01-01 Release 2 assignment
CG3492 2001-07-04 Blastp of sequenced clone
CG3492 2003-01-01 Sim4 clustering to Release 3
CG3492 2008-04-29 Release 5.5 accounting
CG3492 2008-08-15 Release 5.9 accounting
CG3492 2008-12-18 5.12 accounting

Clone Sequence Records

GH18016.complete Sequence

1535 bp (1535 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051526

> GH18016.complete
TTCGACCCATCCCCTCCAAATCCAATCAGTCAAACATTTCTTACCACACA
CGTACAACCCGAACCCCGCTTAGTCATTTCAAATTCAAGTATATAGACTA
CATTGATTTTGGAAGAGTTAGCCACAATGTTCATCCGCGGAGATGCGCCA
CAAGCTTCCCGGGGCAAAATTCCCCAGATCCCCAGCTCCATGACGCCCTA
TGTGGCGGCAGTGAAGCGCGGACCCTACACAATGACCAATCCGGTGTACA
ACACCCACAATCCCAACCTGGTGGGCTTGGATGGCCAGGTGGAGGATTCC
CGGCCCAAGCACACCTTTAATGTGAAGAGGCAAGAGCTGGAGAATAACTA
CCGGCACCACCAGCGGCTGATCCCCGTGCCCACTTCCCGGAGGACGATGC
CCAAGATCCGATCCCACATAGTGATGAACGAGCAGCGGGAGCTGTATCGC
CAGCACCGCGATCGAATGTCCAACATCAAGGGCAAGGTCAACACCTATCT
GCCGCCCCCGAAGGTGCAGATCGAGGGAAATGGCATGGAGCTCTCCTACA
TGGAGATGCTGACCGCACTCTACAAGAAGAGCAACAACACGCTGCGGACC
TTCACCAAGTCGCCGGAGCGCCTGGCAGCCGGCAGGTGGCGCAATGCCAA
CTTGGCCCGGGAGAAGGAGCGCCGCCAACTGGAGAAGAACAAGGAGTTCC
ACAAGGGAGGCGAGCTGTTTGACCCAGAGGCGGGCAAGTCAAAGCGGTAC
AAGCCCAAGTCCTCGGGCTCCTTCAGCTGCGAGATTCCCATGCACGTGCT
CCATCGCTACGAGAACTTGATGGACCAATGCGACGTGGGCGTTCTGTGCA
AGCTGCTGCGTCCGCAGATCTACCTGGACATCGAGGTGCGGGAAGCCCGC
ATCCAGGGCAGGCTGATCATCCAGCTCTTCACCGAGGCCTGTCCGCAGGT
GGTGCTGGAGTTCATGAGGATCTGCACCCAGAACAACAGTAGCGCCATCG
TATTCAACCGCGCCCTGGCGCCCATTTGGATGGAGGGACGACTGGCCATG
GATCCGCAGAGAAGCACCGAGCTGACCAACATCGAGCACGACTTCGAGGT
GCTGAACCACGGAGTGGACGCCGGAATCCTCTCCTTTCCCAGTCGCTATG
TCAGGGGAAACGCCCGGACTGCCGTCAACTTCACCATCAGCTTTAAGCCC
CTGTCCATTCTCAACGGCAGGAGAATCGCCTTCGGGAAGGTTCGCAAGGG
CATGCAGCTCCTGGAGAGGATTCAGGTGGCCGTCGGACACCTGCCCATGA
GCCACAACTTGATCTCGCTGACGGACTGTGGAGTGATCTGAGAGGTGTAA
AATTTCCAGTAGATAGTTGGGATCTACTCATAACTTTTCGAAGAAAATTA
ATTAGGATCAATTGCTAGGCGGAAATCTATATTCTTATTCTTAAGCCATG
TCACCCCACTTAAAGCTGCTGTAAACCACAAGTAAATGATTAATGTGCAT
AGATACATAGATACGAAAAAAAAAAAAAAAAAAAA

GH18016.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:35:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3492-RA 1522 CG3492-RA 1..1516 1..1516 7580 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20358595..20360109 1..1515 7470 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:57:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24472712..24474227 1..1516 7580 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24473911..24475426 1..1516 7580 100 Plus
Blast to na_te.dros performed on 2019-03-15 15:22:39 has no hits.

GH18016.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:23:22 Download gff for GH18016.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20358595..20360109 1..1515 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:47:35 Download gff for GH18016.complete
Subject Subject Range Query Range Percent Splice Strand
CG3492-RA 1..1215 127..1341 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:25:47 Download gff for GH18016.complete
Subject Subject Range Query Range Percent Splice Strand
CG3492-RA 1..1215 127..1341 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:26:39 Download gff for GH18016.complete
Subject Subject Range Query Range Percent Splice Strand
CG3492-RA 1..1215 127..1341 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:58:50 Download gff for GH18016.complete
Subject Subject Range Query Range Percent Splice Strand
CG3492-RA 1..1215 127..1341 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:04:32 Download gff for GH18016.complete
Subject Subject Range Query Range Percent Splice Strand
CG3492-RA 1..1215 127..1341 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:24:27 Download gff for GH18016.complete
Subject Subject Range Query Range Percent Splice Strand
CG3492-RA 1..1515 1..1515 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:25:47 Download gff for GH18016.complete
Subject Subject Range Query Range Percent Splice Strand
CG3492-RA 1..1515 1..1515 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:26:39 Download gff for GH18016.complete
Subject Subject Range Query Range Percent Splice Strand
CG3492-RA 1..1515 1..1515 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:58:50 Download gff for GH18016.complete
Subject Subject Range Query Range Percent Splice Strand
CG3492-RA 1..1515 1..1515 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:04:32 Download gff for GH18016.complete
Subject Subject Range Query Range Percent Splice Strand
CG3492-RA 1..1515 1..1515 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:23:22 Download gff for GH18016.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24472712..24474226 1..1515 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:23:22 Download gff for GH18016.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24472712..24474226 1..1515 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:23:22 Download gff for GH18016.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24472712..24474226 1..1515 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:26:39 Download gff for GH18016.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20360235..20361749 1..1515 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:36:38 Download gff for GH18016.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24473929..24475443 1..1515 100   Plus

GH18016.pep Sequence

Translation from 126 to 1340

> GH18016.pep
MFIRGDAPQASRGKIPQIPSSMTPYVAAVKRGPYTMTNPVYNTHNPNLVG
LDGQVEDSRPKHTFNVKRQELENNYRHHQRLIPVPTSRRTMPKIRSHIVM
NEQRELYRQHRDRMSNIKGKVNTYLPPPKVQIEGNGMELSYMEMLTALYK
KSNNTLRTFTKSPERLAAGRWRNANLAREKERRQLEKNKEFHKGGELFDP
EAGKSKRYKPKSSGSFSCEIPMHVLHRYENLMDQCDVGVLCKLLRPQIYL
DIEVREARIQGRLIIQLFTEACPQVVLEFMRICTQNNSSAIVFNRALAPI
WMEGRLAMDPQRSTELTNIEHDFEVLNHGVDAGILSFPSRYVRGNARTAV
NFTISFKPLSILNGRRIAFGKVRKGMQLLERIQVAVGHLPMSHNLISLTD
CGVI*

GH18016.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13613-PA 402 GF13613-PA 1..402 1..404 1838 82.4 Plus
Dana\GF21208-PA 375 GF21208-PA 202..354 240..383 245 37.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:46:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22966-PA 404 GG22966-PA 1..404 1..404 2085 94.1 Plus
Dere\GG18786-PA 363 GG18786-PA 191..342 240..383 228 34.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20999-PA 402 GH20999-PA 1..402 1..404 1432 66.2 Plus
Dgri\GH22509-PA 158 GH22509-PA 1..158 245..404 274 37.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3492-PA 404 CG3492-PA 1..404 1..404 2115 100 Plus
CG30350-PA 369 CG30350-PA 149..369 178..404 291 33.5 Plus
CG15767-PA 370 CG15767-PA 198..349 240..383 234 35.5 Plus
CG32236-PA 385 CG32236-PA 225..385 243..404 215 34.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20637-PA 401 GI20637-PA 1..401 1..404 1430 65.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20123-PA 403 GL20123-PA 1..403 1..404 1509 67.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17477-PA 403 GA17477-PA 1..403 1..404 1509 67.7 Plus
Dpse\GA15779-PB 377 GA15779-PB 181..377 208..404 288 33.8 Plus
Dpse\GA16775-PB 397 GA16775-PB 237..397 243..404 253 34.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11860-PA 404 GM11860-PA 1..404 1..404 2147 98.5 Plus
Dsec\GM12437-PA 368 GM12437-PA 196..348 240..384 237 35.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11858-PA 404 GD11858-PA 1..404 1..404 2143 98.3 Plus
Dsim\GD10604-PA 369 GD10604-PA 149..369 178..404 302 32.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21605-PA 402 GJ21605-PA 1..402 1..404 1495 68.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19683-PA 396 GK19683-PA 1..396 1..404 1462 66.3 Plus
Dwil\GK25154-PA 353 GK25154-PA 131..333 193..384 256 31.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14405-PA 404 GE14405-PA 1..404 1..404 2065 93.3 Plus
Dyak\GE16431-PA 361 GE16431-PA 189..336 240..379 229 35.1 Plus

GH18016.hyp Sequence

Translation from 126 to 1340

> GH18016.hyp
MFIRGDAPQASRGKIPQIPSSMTPYVAAVKRGPYTMTNPVYNTHNPNLVG
LDGQVEDSRPKHTFNVKRQELENNYRHHQRLIPVPTSRRTMPKIRSHIVM
NEQRELYRQHRDRMSNIKGKVNTYLPPPKVQIEGNGMELSYMEMLTALYK
KSNNTLRTFTKSPERLAAGRWRNANLAREKERRQLEKNKEFHKGGELFDP
EAGKSKRYKPKSSGSFSCEIPMHVLHRYENLMDQCDVGVLCKLLRPQIYL
DIEVREARIQGRLIIQLFTEACPQVVLEFMRICTQNNSSAIVFNRALAPI
WMEGRLAMDPQRSTELTNIEHDFEVLNHGVDAGILSFPSRYVRGNARTAV
NFTISFKPLSILNGRRIAFGKVRKGMQLLERIQVAVGHLPMSHNLISLTD
CGVI*

GH18016.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3492-PA 404 CG3492-PA 1..404 1..404 2115 100 Plus
CG30350-PA 369 CG30350-PA 149..369 178..404 291 33.5 Plus
CG15767-PA 370 CG15767-PA 198..349 240..383 234 35.5 Plus
CG32236-PA 385 CG32236-PA 225..385 243..404 215 34.8 Plus