Clone GH18028 Report

Search the DGRC for GH18028

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:180
Well:28
Vector:pOT2
Associated Gene/TranscriptCG3835-RA
Protein status:GH18028.pep: gold
Preliminary Size:1937
Sequenced Size:1951

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3835 2001-07-04 Blastp of sequenced clone
CG3835 2003-01-01 Sim4 clustering to Release 3
CG3835 2008-04-29 Release 5.5 accounting
CG3835 2008-08-15 Release 5.9 accounting
CG3835 2008-12-18 5.12 accounting

Clone Sequence Records

GH18028.complete Sequence

1951 bp (1951 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051527

> GH18028.complete
GTGAGGAGAAGATTGCGTCCACACCCCCCTCGAGTGGATGAATGTTGGTG
TGATAACGTGATAAGCATCCTAGTGCTCCGGGGAAGTCCGGCAGTCTGCC
ATTGTGTCTAAACAAAGAGAGTCGGCTTATCGAGCCGTTCCATAATAATA
ATAACTTCGCTTTTTATGCATCCTAACGCTTAATATAAAAGACATATAAC
AGTTGCGGCATATAACAGATAAACTCGAAGCCCTTTCCGCAACCATCCTC
CACGATGAGATTCCAACAGCTCCTGCATGTGCGCAGATTGGCCAGCGCCG
GGGCCACCACCTTGATGAGGCGGCCTATCACCACCACCACCATCACCACC
ACCAGTCGCACCGCCCTGGCAGCCACCTACCCCGCTTTCGCAACCACTGT
GCGCACAATGGCGGGCAGCGGGGCTCCGATCCCGGAGCTCACAGAGATCA
CCGACAACGTGCAGCGCGGCAACTACGCCACTCTGACCGACAAGGATGTG
GCGCATTTCGAGCAGCTCCTGGGCAAGAACTTCGTGCTCACTGAGGACCT
GGAGGGATACAACATCTGCTTCCTTAAGAGGATTCGAGGCAACAGCAAGT
TGGTGCTTAAGCCCGGAAGCACGGCGGAGGTGGCCGCCATCCTGAAGTAC
TGCAACGAGCGTCGTTTGGCGGTGGTGCCGCAGGGCGGGAACACAGGTCT
AGTGGGCGGATCCGTGCCGATCTGCGACGAGATTGTCCTTTCTCTAGCGC
GCCTGAACAAGGTGTTATCCGTGGACGAGGTCACCGGCATTGCTGTCGTG
GAGGCGGGCTGCATCCTGGAGAACTTCGATCAGAGGGCCAGAGAGGTGGG
CTTGACGGTGCCACTGGACCTGGGCGCCAAGGCCAGTTGCCACATCGGGG
GCAATGTGTCCACAAACGCGGGCGGAGTGCGGGTGGTGCGTTACGGCAAT
CTGCACGGCTCTGTTTTGGGCGTGGAGGCGGTGCTGGCCACCGGTCAGGT
GCTGGACCTTATGTCCAACTTCAAGAAGGACAACACCGGCTACCACATGA
AGCACTTGTTCATAGGATCCGAGGGCACTCTGGGCGTGGTCACGAAGCTT
TCGATGCTCTGCCCCCATTCCTCGCGAGCGGTGAACGTGGCCTTCATCGG
CCTGAACTCCTTCGACGATGTGCTGAAGACTTTTGTCAGTGCCAAGCGTA
ATCTGGGCGAGATTCTAAGCTCCTGCGAGCTGATTGACGAGCGGGCCTTG
AACACCGCCCTCGAGCAGTTCAAGTTCCTGAACTCCCCCATTTCGGGATT
TCCCTTCTACATGCTCATCGAGACCTCGGGCAGCAACGGTGACCACGACG
AGGAGAAGATCAACCAGTTCATTGGGGACGGTATGGAGCGTGGCGAGATC
CAGGATGGCACCGTAACCGGTGATCCCGGCAAGGTGCAGGAGATCTGGAA
GATCCGCGAAATGGTGCCGCTGGGTCTGATCGAGAAGAGCTTCTGCTTCA
AGTACGACATCTCGCTGCCTCTGCGGGACTTCTACAACATTGTGGACGTG
ATGCGAGAGAGGTGCGGTCCCCTGGCCACAGTTGTCTGCGGATACGGCCA
TCTGGGGGACTCTAATCTGCACCTGAACGTCTCCTGCGAGGAGTTTAACG
GCGAGATCTACAAGCGGGTCGAACCCTTCGTCTACGAGTACACCTCCAAG
CTGAAGGGCAGCATTAGTGCGGAGCACGGCATTGGCTTCCTGAAGAAGGA
CTACCTGCACTACTCCAAGGACCCGGTGGCCATTGGCTACATGCGCGAGA
TGAAGAAGCTGCTGGACCCCAACAGCATCCTCAATCCCTATAAGGTGCTT
AACTGAAGGCTTCTACCTAATAGATTCTATTTTTTTTGTTTGTGTGTAAT
TTTCATAACCTTATAATACAGAAATGGCATTAGAAAAAAAAAAAAAAAAA
A

GH18028.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3835-RA 2031 CG3835-RA 10..1944 1..1935 9675 100 Plus
CG3835.a 2160 CG3835.a 415..2160 190..1935 8730 100 Plus
CG3835-RC 1869 CG3835-RC 124..1869 190..1935 8730 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:15:41
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2037454..2038149 587..1282 3480 100 Plus
chrX 22417052 chrX 2038216..2038866 1283..1933 3240 99.8 Plus
chrX 22417052 chrX 2036921..2037177 190..446 1285 100 Plus
chrX 22417052 chrX 2036670..2036858 1..189 945 100 Plus
chrX 22417052 chrX 2037238..2037382 445..589 725 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:57:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:15:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2143525..2144220 587..1282 3480 100 Plus
X 23542271 X 2144287..2144939 1283..1935 3265 100 Plus
X 23542271 X 2142992..2143248 190..446 1285 100 Plus
X 23542271 X 2142741..2142929 1..189 945 100 Plus
X 23542271 X 2143309..2143453 445..589 725 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2151623..2152318 587..1282 3480 100 Plus
X 23527363 X 2152385..2153037 1283..1935 3265 100 Plus
X 23527363 X 2151090..2151346 190..446 1285 100 Plus
X 23527363 X 2150839..2151027 1..189 945 100 Plus
X 23527363 X 2151407..2151551 445..589 725 100 Plus
Blast to na_te.dros performed on 2019-03-16 15:15:39 has no hits.

GH18028.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:16:22 Download gff for GH18028.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2036921..2037177 190..446 89 -> Plus
chrX 2037240..2037381 447..588 100 -> Plus
chrX 2036670..2036858 1..189 100 -> Plus
chrX 2037456..2038149 589..1282 100 -> Plus
chrX 2038216..2038866 1283..1933 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:47:38 Download gff for GH18028.complete
Subject Subject Range Query Range Percent Splice Strand
CG3835-RA 1..1602 255..1856 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:41:23 Download gff for GH18028.complete
Subject Subject Range Query Range Percent Splice Strand
CG3835-RA 1..1602 255..1856 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:41:58 Download gff for GH18028.complete
Subject Subject Range Query Range Percent Splice Strand
CG3835-RB 1..1602 255..1856 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:19:42 Download gff for GH18028.complete
Subject Subject Range Query Range Percent Splice Strand
CG3835-RA 1..1602 255..1856 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:42:48 Download gff for GH18028.complete
Subject Subject Range Query Range Percent Splice Strand
CG3835-RB 1..1602 255..1856 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:47:19 Download gff for GH18028.complete
Subject Subject Range Query Range Percent Splice Strand
CG3835-RA 10..1942 1..1933 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:41:23 Download gff for GH18028.complete
Subject Subject Range Query Range Percent Splice Strand
CG3835-RA 10..1942 1..1933 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:41:58 Download gff for GH18028.complete
Subject Subject Range Query Range Percent Splice Strand
CG3835-RA 55..1987 1..1933 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:19:42 Download gff for GH18028.complete
Subject Subject Range Query Range Percent Splice Strand
CG3835-RA 10..1942 1..1933 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:42:48 Download gff for GH18028.complete
Subject Subject Range Query Range Percent Splice Strand
CG3835-RA 55..1987 1..1933 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:16:22 Download gff for GH18028.complete
Subject Subject Range Query Range Percent Splice Strand
X 2143311..2143452 447..588 100 -> Plus
X 2142741..2142929 1..189 100 -> Plus
X 2142992..2143248 190..446 100 -> Plus
X 2143527..2144220 589..1282 100 -> Plus
X 2144287..2144937 1283..1933 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:16:22 Download gff for GH18028.complete
Subject Subject Range Query Range Percent Splice Strand
X 2143311..2143452 447..588 100 -> Plus
X 2142741..2142929 1..189 100 -> Plus
X 2142992..2143248 190..446 100 -> Plus
X 2143527..2144220 589..1282 100 -> Plus
X 2144287..2144937 1283..1933 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:16:22 Download gff for GH18028.complete
Subject Subject Range Query Range Percent Splice Strand
X 2143311..2143452 447..588 100 -> Plus
X 2142741..2142929 1..189 100 -> Plus
X 2142992..2143248 190..446 100 -> Plus
X 2143527..2144220 589..1282 100 -> Plus
X 2144287..2144937 1283..1933 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:41:58 Download gff for GH18028.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2037344..2037485 447..588 100 -> Plus
arm_X 2036774..2036962 1..189 100 -> Plus
arm_X 2037025..2037281 190..446 100 -> Plus
arm_X 2037560..2038253 589..1282 100 -> Plus
arm_X 2038320..2038970 1283..1933 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:54:39 Download gff for GH18028.complete
Subject Subject Range Query Range Percent Splice Strand
X 2151409..2151550 447..588 100 -> Plus
X 2151090..2151346 190..446 100 -> Plus
X 2151625..2152318 589..1282 100 -> Plus
X 2152385..2153035 1283..1933 100   Plus
X 2150839..2151027 1..189 100 -> Plus

GH18028.pep Sequence

Translation from 254 to 1855

> GH18028.pep
MRFQQLLHVRRLASAGATTLMRRPITTTTITTTSRTALAATYPAFATTVR
TMAGSGAPIPELTEITDNVQRGNYATLTDKDVAHFEQLLGKNFVLTEDLE
GYNICFLKRIRGNSKLVLKPGSTAEVAAILKYCNERRLAVVPQGGNTGLV
GGSVPICDEIVLSLARLNKVLSVDEVTGIAVVEAGCILENFDQRAREVGL
TVPLDLGAKASCHIGGNVSTNAGGVRVVRYGNLHGSVLGVEAVLATGQVL
DLMSNFKKDNTGYHMKHLFIGSEGTLGVVTKLSMLCPHSSRAVNVAFIGL
NSFDDVLKTFVSAKRNLGEILSSCELIDERALNTALEQFKFLNSPISGFP
FYMLIETSGSNGDHDEEKINQFIGDGMERGEIQDGTVTGDPGKVQEIWKI
REMVPLGLIEKSFCFKYDISLPLRDFYNIVDVMRERCGPLATVVCGYGHL
GDSNLHLNVSCEEFNGEIYKRVEPFVYEYTSKLKGSISAEHGIGFLKKDY
LHYSKDPVAIGYMREMKKLLDPNSILNPYKVLN*

GH18028.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21462-PA 473 GF21462-PA 3..473 63..533 2410 95.5 Plus
Dana\GF12633-PA 637 GF12633-PA 155..333 109..284 173 26.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:16:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12909-PA 531 GG12909-PA 1..531 1..533 2788 98.7 Plus
Dere\GG22382-PA 636 GG22382-PA 154..332 109..284 163 27.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:16:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24571-PA 486 GH24571-PA 2..486 49..533 2322 87.8 Plus
Dgri\GH20803-PA 627 GH20803-PA 149..330 106..284 168 26.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
D2hgdh-PA 533 CG3835-PA 1..533 1..533 2748 100 Plus
D2hgdh-PC 533 CG3835-PC 1..533 1..533 2748 100 Plus
D2hgdh-PB 533 CG3835-PB 1..533 1..533 2748 100 Plus
ADPS-PC 631 CG10253-PC 161..330 116..282 173 28.7 Plus
ADPS-PB 631 CG10253-PB 161..330 116..282 173 28.7 Plus
ADPS-PD 631 CG10253-PD 161..330 116..282 173 28.7 Plus
ADPS-PA 631 CG10253-PA 161..330 116..282 173 28.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11068-PA 530 GI11068-PA 1..530 1..533 2449 86.5 Plus
Dmoj\GI20890-PA 635 GI20890-PA 159..330 116..284 176 28.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:16:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14161-PA 513 GL14161-PA 1..513 1..533 2503 88.9 Plus
Dper\GL11706-PA 596 GL11706-PA 123..294 116..284 177 28.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:16:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17719-PA 513 GA17719-PA 1..513 1..533 2503 88.9 Plus
Dpse\GA24243-PA 641 GA24243-PA 162..333 116..284 177 28.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:16:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19199-PA 533 GM19199-PA 1..533 1..533 2820 99.2 Plus
Dsec\GM20165-PA 635 GM20165-PA 154..332 109..284 166 27.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:16:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16587-PA 533 GD16587-PA 1..533 1..533 2815 99.1 Plus
Dsim\GD25643-PA 635 GD25643-PA 93..332 35..284 166 25.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16929-PA 520 GJ16929-PA 1..520 1..533 2387 85 Plus
Dvir\GJ20622-PA 642 GJ20622-PA 149..330 106..284 173 26.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10230-PA 521 GK10230-PA 1..521 1..533 2485 89.1 Plus
Dwil\GK21804-PA 628 GK21804-PA 158..345 116..297 166 28.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16237-PA 532 GE16237-PA 1..532 1..533 2771 98.1 Plus
Dyak\GE12271-PA 636 GE12271-PA 154..332 109..284 167 27.3 Plus

GH18028.hyp Sequence

Translation from 254 to 1855

> GH18028.hyp
MRFQQLLHVRRLASAGATTLMRRPITTTTITTTSRTALAATYPAFATTVR
TMAGSGAPIPELTEITDNVQRGNYATLTDKDVAHFEQLLGKNFVLTEDLE
GYNICFLKRIRGNSKLVLKPGSTAEVAAILKYCNERRLAVVPQGGNTGLV
GGSVPICDEIVLSLARLNKVLSVDEVTGIAVVEAGCILENFDQRAREVGL
TVPLDLGAKASCHIGGNVSTNAGGVRVVRYGNLHGSVLGVEAVLATGQVL
DLMSNFKKDNTGYHMKHLFIGSEGTLGVVTKLSMLCPHSSRAVNVAFIGL
NSFDDVLKTFVSAKRNLGEILSSCELIDERALNTALEQFKFLNSPISGFP
FYMLIETSGSNGDHDEEKINQFIGDGMERGEIQDGTVTGDPGKVQEIWKI
REMVPLGLIEKSFCFKYDISLPLRDFYNIVDVMRERCGPLATVVCGYGHL
GDSNLHLNVSCEEFNGEIYKRVEPFVYEYTSKLKGSISAEHGIGFLKKDY
LHYSKDPVAIGYMREMKKLLDPNSILNPYKVLN*

GH18028.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG3835-PA 533 CG3835-PA 1..533 1..533 2748 100 Plus
CG3835-PC 533 CG3835-PC 1..533 1..533 2748 100 Plus
CG3835-PB 533 CG3835-PB 1..533 1..533 2748 100 Plus
CG10253-PC 631 CG10253-PC 161..330 116..282 173 28.7 Plus
CG10253-PB 631 CG10253-PB 161..330 116..282 173 28.7 Plus