Clone GH18123 Report

Search the DGRC for GH18123

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:181
Well:23
Vector:pOT2
Associated Gene/TranscriptdeltaCOP-RA
Protein status:GH18123.pep: gold
Preliminary Size:2389
Sequenced Size:2190

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14813 2001-01-01 Release 2 assignment
CG14813 2001-07-04 Blastp of sequenced clone
deltaCOP 2008-04-29 Release 5.5 accounting
deltaCOP 2008-08-15 Release 5.9 accounting
deltaCOP 2008-12-18 5.12 accounting

Clone Sequence Records

GH18123.complete Sequence

2190 bp (2190 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051528

> GH18123.complete
TCACACTACCCGAACTCACACAAAGCCACGGTAAACATTTGTCGCAGAAC
CGAACACGTCAGCTACGGGGATTGATTGTTAAACAACGTTTCTATCGCCC
CGCAAATCCGATCCGTAGCAGCAGTCCATCCTGCGCCGTCCGCATCCGAT
CCGCGAAGTATTTTCCAGGGCAAAAACGTCAAACGCAGCAGCAAAATGGT
ATTAATTGCTGCGGCTGTCTGCACGAAGAATGGCAAAGTGATTCTGTCAC
GTCAGTTCGTCGAGATGACGAAGGCACGCATCGAGGGACTGCTGGCTGCC
TTTCCCAAGCTGATGACTGCTGGCAAGCAGCACACTTACGTGGAGACGGA
CTCCGTGCGCTACGTCTACCAGCCGATGGAGAAACTATATATGCTGCTCA
TCACCACTAAGGCCAGCAACATTCTGGAGGATCTGGAGACCCTGCGCCTC
TTCTCGAAAGTGATTCCCGAGTACAGCCACTCGCTCGACGAGAAGGAGAT
TGTGGAGAATGCCTTCAATCTGATCTTCGCATTTGACGAGATCGTGGCAC
TCGGCTACAGGGAGAGCGTCAACTTGGCCCAGATCAAGACCTTCGTGGAG
ATGGACTCACATGAGGAGAAGGTCTACCAGGCAGTGCGTCAGACGCAGGA
GCGTGATGCGCGCCAGAAGATGCGCGAGAAGGCCAAGGAACTGCAGCGGC
AGCGCATGGAGGCCAGCAAACGGGGTGGTCCCTCCCTGGGTGGCATTGGC
AGCCGCAGCGGCGGCTTTAGCGCCGACGGAATTGGCAGTAGCGGCGTGAG
CAGCAGTTCCGGTGCCTCCAGCGCCAACACCGGCATCACCTCCATCGATG
TGGACACCAAATCCAAGGCGGCTGCCAGTAAACCAGCTTCCCGCAATGCC
CTCAAGCTAGGTGGCAAGTCCAAGGACGTCGATAGTTTCGTGGATCAGCT
GAAGAACGAGGGCGAGAAGATTGCCAATCTGGCACCGGCGGCGCCCGCTG
GAGGTTCCAGTGCTGCAGCTAGCGCCAGTGCAGCGGCCAAGGCAGCTATC
GCGTCGGACATTCACAAAGAGAGCGTACATCTGAAGATTGAGGACAAGCT
AGTAGTGCGTCTGGGACGCGATGGTGGCGTGCAGCAGTTCGAGAACTCGG
GCCTCCTGACGTTGCGCATTACGGACGAGGCCTACGGACGCATTTTGCTG
AAGCTGTCTCCCAACCACACACAGGGCCTGCAGTTGCAGACCCACCCCAA
CGTGGACAAGGAGCTGTTCAAGTCGCGCACTACCATCGGACTAAAGAACT
TGGGCAAGCCGTTTCCCCTTAACACCGATGTGGGTGTGCTCAAGTGGCGC
TTCGTCTCGCAGGACGAGTCGGCAGTCCCGCTGACCATTAACTGCTGGCC
ATCGGATAATGGAGAGGGTGGATGCGATGTTAACATTGAGTATGAACTGG
AGGCGCAGCAGCTAGAGCTGCAGGACGTGGCCATTGTCATTCCCTTGCCA
ATGAATGTGCAGCCTTCGGTGGCGGAGTACGACGGCACCTACAACTACGA
TTCACGCAAGCATGTGCTCCAGTGGCACATTCCAATAATCGATGCCGCCA
ACAAGTCCGGTTCTATGGAGTTCAGCTGCAGTGCCTCCATTCCCGGTGAC
TTCTTCCCCTTGCAGGTGTCCTTCGTCTCGAAAACGCCGTATGCGGGCGT
CGTGGCCCAGGATGTGGTGCAGGTGGACAGCGAGGCGGCGGTCAAGTATT
CAAGCGAGTCCATTCTGTTCGTGGAAAAGTACGAGATCGTGTAGGCCGCG
CCGCTGGCCACGCCCACCTAAGTAGTACATAAATATACATAATTTCCCGG
GGTCATCCGATGCGATGCAATTAATTCAACTGCTGCAGCATGTTGAGAAT
TATTTTTCCATGTGCGAACTTTACATATTTATGGCGCAGACAGCTTCTCA
GAGCGAGTAATTGATTCCAAAAAAAAAAAAAAAAACACCATCAAAGCCAA
TTAATTAAACTAATTTTGTGCACTCCGCTGCGCTGCATATAACGGTATCA
AATAAATTAATTGCAATTAGTTGTAACTGGCGATTGCAGTGTTTTGTTTT
GTGTGCTTCGTCGCACCCCTTCGATTTGAGTAATTTGTATGTAGATTGCT
ATGAATAAACCATATACAATATAAAAAAAAAAAAAAAAAA

GH18123.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
deltaCOP-RA 2268 deltaCOP-RA 88..2260 1..2173 10865 100 Plus
deltaCOP-RB 2265 deltaCOP-RB 88..2257 1..2173 10795 99.8 Plus
deltaCOP.a 2090 deltaCOP.a 39..2090 118..2172 10205 99.8 Plus
deltaCOP.a 2090 deltaCOP.a 10..39 1..30 150 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1752984..1753656 2172..1500 3365 100 Minus
chrX 22417052 chrX 1754529..1754942 875..462 2070 100 Minus
chrX 22417052 chrX 1753896..1754215 1391..1072 1585 99.7 Minus
chrX 22417052 chrX 1754999..1755224 462..237 1130 100 Minus
chrX 22417052 chrX 1755435..1755635 201..1 1005 100 Minus
chrX 22417052 chrX 1754270..1754467 1073..876 990 100 Minus
chrX 22417052 chrX 1753714..1753825 1499..1388 560 100 Minus
chrX 22417052 chrX 1755289..1755329 238..198 205 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:57:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1859140..1859813 2173..1500 3370 100 Minus
X 23542271 X 1860686..1861099 875..462 2070 100 Minus
X 23542271 X 1860053..1860372 1391..1072 1585 99.7 Minus
X 23542271 X 1861156..1861381 462..237 1130 100 Minus
X 23542271 X 1861592..1861792 201..1 1005 100 Minus
X 23542271 X 1860427..1860624 1073..876 990 100 Minus
X 23542271 X 1859871..1859982 1499..1388 560 100 Minus
X 23542271 X 1861446..1861486 238..198 205 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1867238..1867911 2173..1500 3370 100 Minus
X 23527363 X 1868784..1869197 875..462 2070 100 Minus
X 23527363 X 1868151..1868470 1391..1072 1585 99.6 Minus
X 23527363 X 1869254..1869479 462..237 1130 100 Minus
X 23527363 X 1869690..1869890 201..1 1005 100 Minus
X 23527363 X 1868525..1868722 1073..876 990 100 Minus
X 23527363 X 1867969..1868080 1499..1388 560 100 Minus
X 23527363 X 1869544..1869584 238..198 205 100 Minus
Blast to na_te.dros performed on 2019-03-16 17:14:58 has no hits.

GH18123.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:15:47 Download gff for GH18123.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1752984..1753656 1500..2172 100 <- Minus
chrX 1753714..1753825 1388..1499 100 <- Minus
chrX 1753900..1754213 1074..1387 100 <- Minus
chrX 1754270..1754467 876..1073 100 <- Minus
chrX 1754529..1754941 463..875 100 <- Minus
chrX 1754999..1755222 239..462 100 <- Minus
chrX 1755289..1755328 199..238 100 <- Minus
chrX 1755438..1755635 1..198 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:47:40 Download gff for GH18123.complete
Subject Subject Range Query Range Percent Splice Strand
deltaCOP-RA 1..1599 196..1794 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:59:51 Download gff for GH18123.complete
Subject Subject Range Query Range Percent Splice Strand
deltaCOP-RA 1..1599 196..1794 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:53:50 Download gff for GH18123.complete
Subject Subject Range Query Range Percent Splice Strand
deltaCOP-RA 1..1599 196..1794 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:43:46 Download gff for GH18123.complete
Subject Subject Range Query Range Percent Splice Strand
deltaCOP-RA 1..1599 196..1794 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:55:19 Download gff for GH18123.complete
Subject Subject Range Query Range Percent Splice Strand
deltaCOP-RA 1..1599 196..1794 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:15:06 Download gff for GH18123.complete
Subject Subject Range Query Range Percent Splice Strand
deltaCOP-RA 1..2170 1..2170 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:59:51 Download gff for GH18123.complete
Subject Subject Range Query Range Percent Splice Strand
deltaCOP-RA 1..2172 1..2172 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:53:50 Download gff for GH18123.complete
Subject Subject Range Query Range Percent Splice Strand
deltaCOP-RA 1..2172 1..2172 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:43:47 Download gff for GH18123.complete
Subject Subject Range Query Range Percent Splice Strand
deltaCOP-RA 1..2170 1..2170 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:55:19 Download gff for GH18123.complete
Subject Subject Range Query Range Percent Splice Strand
deltaCOP-RA 1..2170 3..2172 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:15:47 Download gff for GH18123.complete
Subject Subject Range Query Range Percent Splice Strand
X 1861446..1861485 199..238 100 <- Minus
X 1860057..1860370 1074..1387 100 <- Minus
X 1860427..1860624 876..1073 100 <- Minus
X 1861595..1861792 1..198 100   Minus
X 1860686..1861098 463..875 100 <- Minus
X 1859141..1859813 1500..2172 100 <- Minus
X 1859871..1859982 1388..1499 100 <- Minus
X 1861156..1861379 239..462 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:15:47 Download gff for GH18123.complete
Subject Subject Range Query Range Percent Splice Strand
X 1861446..1861485 199..238 100 <- Minus
X 1860057..1860370 1074..1387 100 <- Minus
X 1860427..1860624 876..1073 100 <- Minus
X 1861595..1861792 1..198 100   Minus
X 1860686..1861098 463..875 100 <- Minus
X 1859141..1859813 1500..2172 100 <- Minus
X 1859871..1859982 1388..1499 100 <- Minus
X 1861156..1861379 239..462 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:15:47 Download gff for GH18123.complete
Subject Subject Range Query Range Percent Splice Strand
X 1861446..1861485 199..238 100 <- Minus
X 1860057..1860370 1074..1387 100 <- Minus
X 1860427..1860624 876..1073 100 <- Minus
X 1861595..1861792 1..198 100   Minus
X 1860686..1861098 463..875 100 <- Minus
X 1859141..1859813 1500..2172 100 <- Minus
X 1859871..1859982 1388..1499 100 <- Minus
X 1861156..1861379 239..462 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:53:50 Download gff for GH18123.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1753174..1753846 1500..2172 100 <- Minus
arm_X 1753904..1754015 1388..1499 100 <- Minus
arm_X 1754090..1754403 1074..1387 100 <- Minus
arm_X 1754460..1754657 876..1073 100 <- Minus
arm_X 1754719..1755131 463..875 100 <- Minus
arm_X 1755189..1755412 239..462 100 <- Minus
arm_X 1755479..1755518 199..238 100 <- Minus
arm_X 1755628..1755825 1..198 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:26:40 Download gff for GH18123.complete
Subject Subject Range Query Range Percent Splice Strand
X 1869693..1869890 1..198 100   Minus
X 1867239..1867911 1500..2172 100 <- Minus
X 1867969..1868080 1388..1499 100 <- Minus
X 1868155..1868468 1074..1387 100 <- Minus
X 1868525..1868722 876..1073 100 <- Minus
X 1868784..1869196 463..875 100 <- Minus
X 1869254..1869477 239..462 100 <- Minus
X 1869544..1869583 199..238 100 <- Minus

GH18123.pep Sequence

Translation from 195 to 1793

> GH18123.pep
MVLIAAAVCTKNGKVILSRQFVEMTKARIEGLLAAFPKLMTAGKQHTYVE
TDSVRYVYQPMEKLYMLLITTKASNILEDLETLRLFSKVIPEYSHSLDEK
EIVENAFNLIFAFDEIVALGYRESVNLAQIKTFVEMDSHEEKVYQAVRQT
QERDARQKMREKAKELQRQRMEASKRGGPSLGGIGSRSGGFSADGIGSSG
VSSSSGASSANTGITSIDVDTKSKAAASKPASRNALKLGGKSKDVDSFVD
QLKNEGEKIANLAPAAPAGGSSAAASASAAAKAAIASDIHKESVHLKIED
KLVVRLGRDGGVQQFENSGLLTLRITDEAYGRILLKLSPNHTQGLQLQTH
PNVDKELFKSRTTIGLKNLGKPFPLNTDVGVLKWRFVSQDESAVPLTINC
WPSDNGEGGCDVNIEYELEAQQLELQDVAIVIPLPMNVQPSVAEYDGTYN
YDSRKHVLQWHIPIIDAANKSGSMEFSCSASIPGDFFPLQVSFVSKTPYA
GVVAQDVVQVDSEAAVKYSSESILFVEKYEIV*

GH18123.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21077-PA 536 GF21077-PA 6..536 1..532 2389 92.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12678-PA 532 GG12678-PA 1..532 1..532 2783 97.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17851-PA 530 GH17851-PA 1..530 2..532 2245 82.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
deltaCOP-PA 532 CG14813-PA 1..532 1..532 2671 100 Plus
deltaCOP-PB 531 CG14813-PB 1..531 1..532 2655 99.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10991-PA 543 GI10991-PA 11..543 1..532 2262 86 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20219-PA 536 GL20219-PA 8..536 2..532 2391 89.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13266-PA 532 GA13266-PA 4..532 2..532 2388 89.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18950-PA 532 GM18950-PA 1..532 1..532 2790 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24626-PA 532 GD24626-PA 1..532 1..532 2798 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19103-PA 534 GJ19103-PA 1..534 1..532 2208 86.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20068-PA 538 GK20068-PA 2..538 2..532 2269 85.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16508-PA 532 GE16508-PA 1..532 1..532 2783 97.9 Plus

GH18123.hyp Sequence

Translation from 195 to 1793

> GH18123.hyp
MVLIAAAVCTKNGKVILSRQFVEMTKARIEGLLAAFPKLMTAGKQHTYVE
TDSVRYVYQPMEKLYMLLITTKASNILEDLETLRLFSKVIPEYSHSLDEK
EIVENAFNLIFAFDEIVALGYRESVNLAQIKTFVEMDSHEEKVYQAVRQT
QERDARQKMREKAKELQRQRMEASKRGGPSLGGIGSRSGGFSADGIGSSG
VSSSSGASSANTGITSIDVDTKSKAAASKPASRNALKLGGKSKDVDSFVD
QLKNEGEKIANLAPAAPAGGSSAAASASAAAKAAIASDIHKESVHLKIED
KLVVRLGRDGGVQQFENSGLLTLRITDEAYGRILLKLSPNHTQGLQLQTH
PNVDKELFKSRTTIGLKNLGKPFPLNTDVGVLKWRFVSQDESAVPLTINC
WPSDNGEGGCDVNIEYELEAQQLELQDVAIVIPLPMNVQPSVAEYDGTYN
YDSRKHVLQWHIPIIDAANKSGSMEFSCSASIPGDFFPLQVSFVSKTPYA
GVVAQDVVQVDSEAAVKYSSESILFVEKYEIV*

GH18123.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
deltaCOP-PA 532 CG14813-PA 1..532 1..532 2671 100 Plus
deltaCOP-PB 531 CG14813-PB 1..531 1..532 2655 99.8 Plus