Clone GH18178 Report

Search the DGRC for GH18178

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:181
Well:78
Vector:pOT2
Associated Gene/TranscriptCG16826-RA
Protein status:GH18178.pep: gold
Preliminary Size:1026
Sequenced Size:1189

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16826 2002-01-01 Sim4 clustering to Release 2
CG16826 2002-06-13 Blastp of sequenced clone
CG16826 2003-01-01 Sim4 clustering to Release 3
CG16826 2008-04-29 Release 5.5 accounting
CG16826 2008-08-15 Release 5.9 accounting
CG16826 2008-12-18 5.12 accounting

Clone Sequence Records

GH18178.complete Sequence

1189 bp (1189 high quality bases) assembled on 2002-06-13

GenBank Submission: AY122116

> GH18178.complete
CCGACGATGCATTCGACCAAGTCAGCCGTTCTCCTGCTCGCCCTGGCCAT
CAGCGCCAGCTGCGTTGTTGCCACACCGCATCCGGAATTCTTGGATGAAA
TCTTCGGCTCCATAAACCAAACTGGCCAGCACATCATCAGTGGATTCGTG
AATGCCACCAGGAATGGCACGGCCATTGCTGGTGAGTTCCTGGACAGCAT
AAGGAACTCCTCCGCCCAGTACACGCACGAAACCCTGGAGTTTGCCCAAA
AAATCGCAGATGCAGTTCATAGAGCCGCCACTGAGTCAATCGTCGACTTT
TCCGCGACTCTGAGGGCGCAGATCGACGCACTGCATCAGGGGATTGATCG
GGTGAGAAACATCCTGCAGCGAGAGGCACTTAAGGATGCTCTCGCCAGAC
TGCAGACCGTCAATACCGTCGTAAATGATCTGGAAGTGGCCGTGAATAAC
CTCAATGATCGGATAGACGAGAAGAAACAAGAGTATTTCGCCATAATCCA
GAAGAAGTGGTACCAATGGTCTGACGCCCAATTGGAACGAGTGGATAAGC
TGACGAATGGAGTTGGCAACGAGGAAGCCGAGGAGATCATAAATGAGCTA
CTCTCCCGGTATTCCGGATATCTGCACAGCTGCCTGGAGGAGTTGCAAGC
GCAGCAAGCCACGTTTGAGCAAAATGTCCAAGAGGCCATCGAAAAGTACC
ACAATGCCACCAACGAACTGACGGACCAAGTCGAGCTCTGCGTCCAGTTC
AACCTCAGCTTCCTGTCCTGCCGCAATGGCATCAATGAGGCACTACGCGG
ACTCGACTCGGCTCCCGCGGAGCTGCTCACCCTGAAGCTTCAAGGCATCC
GACTACTGGCCATCGGCCTGAATGCCAGCGGATGTGTGGGCCAGACCCTG
GCCGAGCACGAGCTGGAGAAGCCCAGCGTGGAGCGCAAGCTGGATGAGAT
CATTGCGGAGTACCAGGAGCAGCAGACTTCCACCGATGACGACTCTAGCT
CTAATAATGAAACGACCACCATAAGTTCGTAGGATTTCGGGGAGTCATCC
AGTAATGAATATGACAACTCCAGCAATGACGACGAATCCTCATGGAAATA
TTTACAAGAACGTATAGTGTATTTTAGGTGTCGGGTAGAAGCAGCAAAAT
AAATTACTCTAATGCAACTAAAAAAAAAAAAAAAAAAAA

GH18178.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG16826-RA 1169 CG16826-RA 1..1169 1..1169 5845 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13346471..13347639 1..1169 5830 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:57:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13347791..13348962 1..1172 5860 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13347791..13348962 1..1172 5860 100 Plus
Blast to na_te.dros performed 2019-03-15 17:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy8 4955 gypsy8 GYPSY8 4955bp 1610..1831 356..577 110 53.1 Plus

GH18178.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:15:27 Download gff for GH18178.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13346471..13347639 1..1169 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:47:47 Download gff for GH18178.complete
Subject Subject Range Query Range Percent Splice Strand
CG16826-RA 1..1026 7..1032 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:21:51 Download gff for GH18178.complete
Subject Subject Range Query Range Percent Splice Strand
CG16826-RA 1..1026 7..1032 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:29:18 Download gff for GH18178.complete
Subject Subject Range Query Range Percent Splice Strand
CG16826-RA 1..1026 7..1032 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:12:38 Download gff for GH18178.complete
Subject Subject Range Query Range Percent Splice Strand
CG16826-RA 1..1026 7..1032 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:29:54 Download gff for GH18178.complete
Subject Subject Range Query Range Percent Splice Strand
CG16826-RA 1..1026 7..1032 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:48:10 Download gff for GH18178.complete
Subject Subject Range Query Range Percent Splice Strand
CG16826-RA 1..1169 1..1169 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:21:51 Download gff for GH18178.complete
Subject Subject Range Query Range Percent Splice Strand
CG16826-RA 1..1169 1..1169 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:29:18 Download gff for GH18178.complete
Subject Subject Range Query Range Percent Splice Strand
CG16826-RA 1..1169 1..1169 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:12:40 Download gff for GH18178.complete
Subject Subject Range Query Range Percent Splice Strand
CG16826-RA 1..1169 1..1169 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:29:54 Download gff for GH18178.complete
Subject Subject Range Query Range Percent Splice Strand
CG16826-RA 19..1187 1..1169 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:15:27 Download gff for GH18178.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13347791..13348959 1..1169 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:15:27 Download gff for GH18178.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13347791..13348959 1..1169 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:15:27 Download gff for GH18178.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13347791..13348959 1..1169 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:29:18 Download gff for GH18178.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13347791..13348959 1..1169 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:45:22 Download gff for GH18178.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13347791..13348959 1..1169 100   Plus

GH18178.hyp Sequence

Translation from 0 to 1031

> GH18178.hyp
PTMHSTKSAVLLLALAISASCVVATPHPEFLDEIFGSINQTGQHIISGFV
NATRNGTAIAGEFLDSIRNSSAQYTHETLEFAQKIADAVHRAATESIVDF
SATLRAQIDALHQGIDRVRNILQREALKDALARLQTVNTVVNDLEVAVNN
LNDRIDEKKQEYFAIIQKKWYQWSDAQLERVDKLTNGVGNEEAEEIINEL
LSRYSGYLHSCLEELQAQQATFEQNVQEAIEKYHNATNELTDQVELCVQF
NLSFLSCRNGINEALRGLDSAPAELLTLKLQGIRLLAIGLNASGCVGQTL
AEHELEKPSVERKLDEIIAEYQEQQTSTDDDSSSNNETTTISS*

GH18178.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG16826-PB 341 CG16826-PB 1..341 3..343 1709 100 Plus
CG16826-PA 341 CG16826-PA 1..341 3..343 1709 100 Plus
CG33109-PA 296 CG33109-PA 86..295 115..328 239 28 Plus

GH18178.pep Sequence

Translation from 6 to 1031

> GH18178.pep
MHSTKSAVLLLALAISASCVVATPHPEFLDEIFGSINQTGQHIISGFVNA
TRNGTAIAGEFLDSIRNSSAQYTHETLEFAQKIADAVHRAATESIVDFSA
TLRAQIDALHQGIDRVRNILQREALKDALARLQTVNTVVNDLEVAVNNLN
DRIDEKKQEYFAIIQKKWYQWSDAQLERVDKLTNGVGNEEAEEIINELLS
RYSGYLHSCLEELQAQQATFEQNVQEAIEKYHNATNELTDQVELCVQFNL
SFLSCRNGINEALRGLDSAPAELLTLKLQGIRLLAIGLNASGCVGQTLAE
HELEKPSVERKLDEIIAEYQEQQTSTDDDSSSNNETTTISS*

GH18178.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23117-PA 345 GF23117-PA 1..335 1..335 838 49 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23840-PA 338 GG23840-PA 1..334 1..338 1344 76 Plus
Dere\GG21417-PA 297 GG21417-PA 68..295 94..325 218 28 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH25120-PA 972 GH25120-PA 173..461 1..291 267 25.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG16826-PB 341 CG16826-PB 1..341 1..341 1709 100 Plus
CG16826-PA 341 CG16826-PA 1..341 1..341 1709 100 Plus
CG33109-PA 296 CG33109-PA 86..295 113..326 239 28 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17210-PA 759 GI17210-PA 27..270 27..274 236 26.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26181-PA 339 GL26181-PA 1..339 1..338 812 45.2 Plus
Dper\GL23298-PA 324 GL23298-PA 52..313 56..319 212 26.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14168-PA 189 GA14168-PA 1..185 1..185 418 41.3 Plus
Dpse\GA27213-PA 324 GA27213-PA 52..313 56..319 211 25.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10414-PA 329 GM10414-PA 1..329 1..340 1404 79.7 Plus
Dsec\GM25871-PA 296 GM25871-PA 135..295 164..326 212 31.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23888-PA 331 GD23888-PA 1..331 1..340 1415 80.9 Plus
Dsim\GD20442-PA 296 GD20442-PA 135..295 164..326 222 32.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17968-PA 789 GJ17968-PA 1..316 1..318 378 30.5 Plus
Dvir\GJ17968-PA 789 GJ17968-PA 341..659 22..341 287 25.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18645-PA 344 GE18645-PA 1..340 1..340 1355 77.6 Plus
Dyak\GE10047-PA 296 GE10047-PA 79..294 106..325 222 28.6 Plus