Clone GH18251 Report

Search the DGRC for GH18251

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:182
Well:51
Vector:pOT2
Associated Gene/TranscriptCG6762-RA
Protein status:GH18251.pep: gold
Sequenced Size:767

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6762 2003-01-01 Sim4 clustering to Release 3
CG6762 2008-04-29 Release 5.5 accounting
CG6762 2008-08-15 Release 5.9 accounting
CG6762 2008-12-18 5.12 accounting

Clone Sequence Records

GH18251.complete Sequence

767 bp (767 high quality bases) assembled on 2005-06-20

GenBank Submission: BT023718

> GH18251.complete
CAAAACAACATATAGCGGTAAACGAACCCACACATGAGCAGCAAACAAGT
TTCAACGCCGTGCGGTGTCAAAAATCGTGCAATTGTCCGCCATGGAGTTC
ATTAGCCATTTCTTGCGAGCGACGAGCAGACGCACCGCCGCATTGGGTCC
AATCCTGCAAAGAAATCGTAGCGAAATCATCCAAAAACAATCTTTGACCA
ATCGACAGGCATTCCGCAGATACAGATCCAGCTGCAGCACCATGGACACC
ACCGTTCACTCCGCCGGCATCGATGAGACCCACCTGGTGCCCATGAGCGT
CATCCAGCGACCCATTCCCTCCGTCCTGGACGAGCAGAAGGTGCAATCCC
TGATGGAAACCATTAAGAACGAAACCAGCGAAGATGAGGTGCCCCCCATC
GACCTGCTGTGGATCTCGGGCAGCGAGGGAGGCGACTACTACTTCAGCTT
CGGCGGATGCCACCGGTTCGAGGCGTACAAGCGGCTACAGCGGCCGACGA
TCAAGGCGAAGCTGGTGAAGTCCACACTGGGCGATCTGTATCACTACATG
GGCTCCAGCGCGCCCAAGTACCTGGCCTGATCTTTGTCGCTGATCATTTG
TTGTTGTTGTGCATTTGTTTTTGATAAGAATGTCGTGATCGCTGGATAAA
GTTCGAAATTCACGGACATAGCAATAAGAAAAGCTTTATTCTTTGTTTTC
GTAAATTTCTTTTGTTTTTTTTAATAAAGTTTTTTATTTGGCAATCGTTA
AAAAAAAAAAAAAAAAA

GH18251.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6762.d 861 CG6762.d 113..861 1..749 3745 100 Plus
CG6762-RA 976 CG6762-RA 243..976 1..734 3670 100 Plus
CG6762.b 972 CG6762.b 432..972 209..749 2705 100 Plus
CG6762.b 972 CG6762.b 243..431 1..189 945 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17747396..17747779 366..749 1905 99.7 Plus
chrX 22417052 chrX 17746516..17746704 1..189 945 100 Plus
chrX 22417052 chrX 17746819..17746996 190..367 890 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:57:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17858050..17858436 366..752 1935 100 Plus
X 23542271 X 17857170..17857358 1..189 945 100 Plus
X 23542271 X 17857473..17857650 190..367 890 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 17866148..17866534 366..752 1935 100 Plus
X 23527363 X 17865268..17865456 1..189 945 100 Plus
X 23527363 X 17865571..17865748 190..367 890 100 Plus
Blast to na_te.dros performed 2019-03-16 06:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy9 5349 gypsy9 GYPSY9 5349bp 444..588 727..591 110 57.9 Minus

GH18251.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:56:53 Download gff for GH18251.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 17746516..17746704 1..189 100 -> Plus
chrX 17746819..17746996 190..367 100 -> Plus
chrX 17747398..17747779 368..749 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:47:50 Download gff for GH18251.complete
Subject Subject Range Query Range Percent Splice Strand
CG6762-RA 1..489 92..580 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:57:48 Download gff for GH18251.complete
Subject Subject Range Query Range Percent Splice Strand
CG6762-RA 1..489 92..580 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:00:54 Download gff for GH18251.complete
Subject Subject Range Query Range Percent Splice Strand
CG6762-RA 1..489 92..580 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:38:36 Download gff for GH18251.complete
Subject Subject Range Query Range Percent Splice Strand
CG6762-RA 1..489 92..580 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:25:50 Download gff for GH18251.complete
Subject Subject Range Query Range Percent Splice Strand
CG6762-RA 1..489 92..580 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:37:28 Download gff for GH18251.complete
Subject Subject Range Query Range Percent Splice Strand
CG6762-RA 1..580 1..580 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:57:48 Download gff for GH18251.complete
Subject Subject Range Query Range Percent Splice Strand
CG6762-RA 1..749 1..749 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:54 Download gff for GH18251.complete
Subject Subject Range Query Range Percent Splice Strand
CG6762-RA 59..807 1..749 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:38:37 Download gff for GH18251.complete
Subject Subject Range Query Range Percent Splice Strand
CG6762-RA 1..580 1..580 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:25:50 Download gff for GH18251.complete
Subject Subject Range Query Range Percent Splice Strand
CG6762-RA 59..807 1..749 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:56:53 Download gff for GH18251.complete
Subject Subject Range Query Range Percent Splice Strand
X 17857170..17857358 1..189 100 -> Plus
X 17857473..17857650 190..367 100 -> Plus
X 17858052..17858433 368..749 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:56:53 Download gff for GH18251.complete
Subject Subject Range Query Range Percent Splice Strand
X 17857170..17857358 1..189 100 -> Plus
X 17857473..17857650 190..367 100 -> Plus
X 17858052..17858433 368..749 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:56:53 Download gff for GH18251.complete
Subject Subject Range Query Range Percent Splice Strand
X 17857170..17857358 1..189 100 -> Plus
X 17857473..17857650 190..367 100 -> Plus
X 17858052..17858433 368..749 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:54 Download gff for GH18251.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17751203..17751391 1..189 100 -> Plus
arm_X 17751506..17751683 190..367 100 -> Plus
arm_X 17752085..17752466 368..749 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:17:13 Download gff for GH18251.complete
Subject Subject Range Query Range Percent Splice Strand
X 17866150..17866531 368..749 100   Plus
X 17865268..17865456 1..189 100 -> Plus
X 17865571..17865748 190..367 100 -> Plus

GH18251.hyp Sequence

Translation from 91 to 579

> GH18251.hyp
MEFISHFLRATSRRTAALGPILQRNRSEIIQKQSLTNRQAFRRYRSSCST
MDTTVHSAGIDETHLVPMSVIQRPIPSVLDEQKVQSLMETIKNETSEDEV
PPIDLLWISGSEGGDYYFSFGGCHRFEAYKRLQRPTIKAKLVKSTLGDLY
HYMGSSAPKYLA*

GH18251.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG6762-PA 162 CG6762-PA 1..162 1..162 835 100 Plus
CG6762-PD 152 CG6762-PD 1..152 1..162 765 93.8 Plus
CG6762-PC 112 CG6762-PC 1..112 51..162 587 100 Plus
CG6762-PB 112 CG6762-PB 1..112 51..162 587 100 Plus

GH18251.pep Sequence

Translation from 91 to 579

> GH18251.pep
MEFISHFLRATSRRTAALGPILQRNRSEIIQKQSLTNRQAFRRYRSSCST
MDTTVHSAGIDETHLVPMSVIQRPIPSVLDEQKVQSLMETIKNETSEDEV
PPIDLLWISGSEGGDYYFSFGGCHRFEAYKRLQRPTIKAKLVKSTLGDLY
HYMGSSAPKYLA*

GH18251.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21110-PA 112 GF21110-PA 1..112 51..162 541 88.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19136-PA 162 GG19136-PA 1..162 1..162 823 94.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12141-PA 112 GH12141-PA 1..112 51..162 512 83 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG6762-PA 162 CG6762-PA 1..162 1..162 835 100 Plus
CG6762-PD 152 CG6762-PD 1..152 1..162 765 93.8 Plus
CG6762-PC 112 CG6762-PC 1..112 51..162 587 100 Plus
CG6762-PB 112 CG6762-PB 1..112 51..162 587 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16197-PA 115 GI16197-PA 2..115 49..162 506 78.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14755-PA 150 GL14755-PA 1..150 1..162 574 68.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19844-PA 150 GA19844-PA 1..150 1..162 584 69.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22861-PA 162 GM22861-PA 1..162 1..162 853 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17370-PA 162 GD17370-PA 1..162 1..162 848 98.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15889-PA 115 GJ15889-PA 2..115 49..162 520 82.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25764-PA 111 GK25764-PA 1..110 51..161 490 82 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17693-PA 163 GE17693-PA 1..163 1..162 759 92.7 Plus