Clone GH18280 Report

Search the DGRC for GH18280

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:182
Well:80
Vector:pOT2
Associated Gene/TranscriptPGRP-LA-RD
Protein status:GH18280.pep: gold
Preliminary Size:1423
Sequenced Size:1305

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4384 2001-01-01 Release 2 assignment
CG18614 2001-01-01 Release 2 assignment
CG32042 2001-09-19 Blastp of sequenced clone
CG32042 2003-01-01 Sim4 clustering to Release 3
PGRP-LA 2008-04-29 Release 5.5 accounting
PGRP-LA 2008-08-15 Release 5.9 accounting
PGRP-LA 2008-12-18 5.12 accounting

Clone Sequence Records

GH18280.complete Sequence

1305 bp (1305 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060314

> GH18280.complete
ACTGGCGCGCCAGCTACGTACTCCGGAAAGAGTCACGGATTTTCTGAGAT
TTGATCATCTGAGATCGTCATATTCAAGCAACCCTTTTTAAAACATAAAC
AAGCAATCCAAAACGAATCGGCAATGTTCGAGGAAAACAATAGCCCCACA
ACCGATAATTCGCTGTGGACACTTCAGGGTCGTCAAAGAGCGAGTCCCGC
CCAAAGGTTGCACAATCTCACGTCCGCCGGCTCATCGACCTCATCCTCCG
GCCTTCCGTTACCGCAGAATATCTTCACAAATCCAGCTATCCAGCCGTCC
AGCGTTATAAATCTCAACCACTCCACCGACGTGGTAATCGGTCCCATGAC
CCAATACCAGGGACCGGTATCCATATACTATATGGATTATATGGAGGCAC
ACGCCATGCAAACGGCTGCAGGAATCAACAGCAACAATGCCAATGGTAAT
GGCAACGCCAATCGAAGTCGTGATAAGTCGCCATCTAGGCGGGTCACTCG
GAACACCATCCTGCTGATCACGCTGATCCTGTTGGTCCTGGCCACCGGAT
TGATTGTGCTCTACGTGGAACTCAATCGACCCAAGCCCGAGTTGCCCAGT
AATAAAGCCATCTATTTTGGCAACAACTACGACCACCAAACGTGAAACGG
CCATCTCGTCGTCGACAGAGAGCAGTGGGGAGCGTCGAAGAACTCTCATG
GTCTGACCATTCCCCTGAAGCGACCCATTCCCTACGTCCTAATCACCCAC
ATTGGAGTGCAGTCTCTGCCCTGCGATAACATCTACAAGTGCTCCATCAA
GATGCGCACCATTCAGGATTCAGCCATTGCTGAGAAGGGTCTGCCGGATA
TCCAATCCAATTTTTATGTTTCGGAGGAGGGTAACATCTACGTTGGCCGC
GGCTGGGACTGGGCCAACACGTATGCGAACCAGACATTGGCCATTACCTT
TATGGGCGACTATGGCCGGTTTAAGCCCGGTCCCAAACAGCTGGAAGGTG
TCCAATTTCTGCTGGCCCATGCAGTGGCCAATCGAAATATTGATGTGGAC
TACAAACTAGTGGCGCAAAATCAGACTAAGGTGACCAGAAGCCCGGGTGC
ATATGTGTATCAAGAAATCCGGAACTGGCCGCATTTCTACGGCTGCGGAA
TGGACGAAGCACCGGCCTGCGGCATCGAATTGGGCATGAAAACGGAATCG
TGGGACGCCAAGCAATAGCTACAGACTTTTCTACCACCTAAGTGTAACCA
AGCACAAACTGTATTTTAATACATATACTAAGGCGAAAAAAAAAAAAAAA
AAAAA

GH18280.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LA.b 1655 PGRP-LA.b 2..1288 1..1287 6435 100 Plus
PGRP-LA-RD 1358 PGRP-LA-RD 2..1288 1..1287 6435 100 Plus
PGRP-LA-RE 1850 PGRP-LA-RE 660..1303 644..1287 3220 100 Plus
PGRP-LA-RE 1850 PGRP-LA-RE 5..647 1..643 3215 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:13:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9326553..9326873 102..422 1500 97.8 Plus
chr3L 24539361 chr3L 9328935..9329160 644..869 1130 100 Plus
chr3L 24539361 chr3L 9328647..9328871 420..644 1095 99.1 Plus
chr3L 24539361 chr3L 9329391..9329597 868..1074 1005 99 Plus
chr3L 24539361 chr3L 9329659..9329871 1072..1285 1005 99.1 Plus
chr3L 24539361 chr3L 9326278..9326380 1..103 515 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:57:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9334608..9334928 102..422 1605 100 Plus
3L 28110227 3L 9336998..9337223 644..869 1130 100 Plus
3L 28110227 3L 9336710..9336934 420..644 1125 100 Plus
3L 28110227 3L 9337723..9337938 1072..1287 1080 100 Plus
3L 28110227 3L 9337454..9337660 868..1074 1035 100 Plus
3L 28110227 3L 9334333..9334435 1..103 515 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9327708..9328028 102..422 1605 100 Plus
3L 28103327 3L 9330098..9330323 644..869 1130 100 Plus
3L 28103327 3L 9329810..9330034 420..644 1125 100 Plus
3L 28103327 3L 9330823..9331038 1072..1287 1080 100 Plus
3L 28103327 3L 9330554..9330760 868..1074 1035 100 Plus
3L 28103327 3L 9327433..9327535 1..103 515 100 Plus
Blast to na_te.dros performed 2019-03-16 03:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
412 7567 412 412 7567bp 3118..3179 387..445 112 71 Plus

GH18280.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:14:24 Download gff for GH18280.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9326555..9326872 104..421 97 -> Plus
chr3L 9328649..9328870 422..643 99 -> Plus
chr3L 9326278..9326380 1..103 100 -> Plus
chr3L 9328935..9329158 644..867 100 -> Plus
chr3L 9329391..9329597 868..1074 99 -> Plus
chr3L 9329662..9329871 1075..1285 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:47:53 Download gff for GH18280.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RF 89..900 419..1218 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:06:48 Download gff for GH18280.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RF 89..900 419..1218 98   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:56:16 Download gff for GH18280.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RE 1..1107 124..1218 98   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:37:34 Download gff for GH18280.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RF 89..900 419..1218 98   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:34:24 Download gff for GH18280.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RE 1..1107 124..1218 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:56:41 Download gff for GH18280.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RD 2..1286 1..1285 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:06:48 Download gff for GH18280.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RD 2..1286 1..1285 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:56:16 Download gff for GH18280.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RD 2..1286 1..1285 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:37:34 Download gff for GH18280.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RD 2..1286 1..1285 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:34:24 Download gff for GH18280.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RD 2..1286 1..1285 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:14:24 Download gff for GH18280.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9337454..9337660 868..1074 100 -> Plus
3L 9334333..9334435 1..103 100 -> Plus
3L 9334610..9334927 104..421 100 -> Plus
3L 9336712..9336933 422..643 100 -> Plus
3L 9336998..9337221 644..867 100 -> Plus
3L 9337726..9337936 1075..1285 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:14:24 Download gff for GH18280.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9337454..9337660 868..1074 100 -> Plus
3L 9334333..9334435 1..103 100 -> Plus
3L 9334610..9334927 104..421 100 -> Plus
3L 9336712..9336933 422..643 100 -> Plus
3L 9336998..9337221 644..867 100 -> Plus
3L 9337726..9337936 1075..1285 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:14:24 Download gff for GH18280.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9337454..9337660 868..1074 100 -> Plus
3L 9334333..9334435 1..103 100 -> Plus
3L 9334610..9334927 104..421 100 -> Plus
3L 9336712..9336933 422..643 100 -> Plus
3L 9336998..9337221 644..867 100 -> Plus
3L 9337726..9337936 1075..1285 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:56:16 Download gff for GH18280.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9330554..9330760 868..1074 100 -> Plus
arm_3L 9330826..9331036 1075..1285 100   Plus
arm_3L 9330098..9330321 644..867 100 -> Plus
arm_3L 9327433..9327535 1..103 100 -> Plus
arm_3L 9327710..9328027 104..421 100 -> Plus
arm_3L 9329812..9330033 422..643 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:14:46 Download gff for GH18280.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9327433..9327535 1..103 100 -> Plus
3L 9327710..9328027 104..421 100 -> Plus
3L 9329812..9330033 422..643 100 -> Plus
3L 9330098..9330321 644..867 100 -> Plus
3L 9330554..9330760 868..1074 100 -> Plus
3L 9330826..9331036 1075..1285 100   Plus

GH18280.hyp Sequence

Translation from 123 to 644

> GH18280.hyp
MFEENNSPTTDNSLWTLQGRQRASPAQRLHNLTSAGSSTSSSGLPLPQNI
FTNPAIQPSSVINLNHSTDVVIGPMTQYQGPVSIYYMDYMEAHAMQTAAG
INSNNANGNGNANRSRDKSPSRRVTRNTILLITLILLVLATGLIVLYVEL
NRPKPELPSNKAIYFGNNYDHQT*

GH18280.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LA-PD 173 CG32042-PD 1..173 1..173 893 100 Plus
PGRP-LA-PE 368 CG32042-PE 1..173 1..173 893 100 Plus
PGRP-LA-PF 299 CG32042-PF 24..104 92..173 373 91.5 Plus

GH18280.pep Sequence

Translation from 123 to 644

> GH18280.pep
MFEENNSPTTDNSLWTLQGRQRASPAQRLHNLTSAGSSTSSSGLPLPQNI
FTNPAIQPSSVINLNHSTDVVIGPMTQYQGPVSIYYMDYMEAHAMQTAAG
INSNNANGNGNANRSRDKSPSRRVTRNTILLITLILLVLATGLIVLYVEL
NRPKPELPSNKAIYFGNNYDHQT*

GH18280.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10679-PA 391 GF10679-PA 1..196 1..173 673 72.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15354-PA 103 GG15354-PA 1..103 1..101 442 88.3 Plus
Dere\GG15355-PA 299 GG15355-PA 45..104 114..173 235 95 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LA-PD 173 CG32042-PD 1..173 1..173 893 100 Plus
PGRP-LA-PE 368 CG32042-PE 1..173 1..173 893 100 Plus
PGRP-LA-PF 299 CG32042-PF 24..104 92..173 373 91.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12107-PA 418 GI12107-PA 14..223 9..173 266 39.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA29293-PA 113 GA29293-PA 1..113 1..104 318 63.7 Plus
Dpse\GA29294-PA 291 GA29294-PA 44..96 120..173 147 79.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25128-PA 368 GM25128-PA 1..173 1..173 884 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\PGRP-LA-PA 368 GD14165-PA 1..173 1..173 885 97.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13381-PA 128 GJ13381-PA 14..96 11..99 268 66.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20816-PA 101 GE20816-PA 1..99 1..99 441 91.9 Plus
Dyak\PGRP-LA-PA 299 GE20817-PA 45..104 114..173 234 95 Plus