Clone GH18329 Report

Search the DGRC for GH18329

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:183
Well:29
Vector:pOT2
Associated Gene/Transcriptpapi-RA
Protein status:GH18329.pep: gold
Preliminary Size:2356
Sequenced Size:2334

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7082 2001-01-01 Release 2 assignment
CG7082 2001-09-19 Blastp of sequenced clone
CG7082 2003-01-01 Sim4 clustering to Release 3
CG7082 2008-04-29 Release 5.5 accounting
CG7082 2008-08-15 Release 5.9 accounting
CG7082 2008-12-18 5.12 accounting

Clone Sequence Records

GH18329.complete Sequence

2334 bp (2334 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058408

> GH18329.complete
TAGAGGCGAAATCAAGTTCGGCCGCGAGAATTAAGCCATAAAATTTACGA
CTTTTCGAACGAAAAACGAGACATAAAAATGTGAAAACCAAACAGCGAAT
GGCTTTCAAATAAAACGCTTCATTGAGCTTAAGCGCTTTTTGCTATCTAA
AAATCGAACTTTAAACAAACATAGACAAAAATTCACGATCAAGTTTTCGA
AAACCTCGAAAGGCAGACTTGAAAAGGCTGCCCCAAACACCCAGCTCTAC
GCAAATCCACCCACAACAAGTTAATCAACATGTTGCGCAACACGCCTTTC
GGTGCCACGCCCACCTACAAACTACTTCTGGGCTTCGGACTATGCTCCCT
TGGGGGCGCCATGCTATATGCCTATTTCAAGACTCGAAACGACGAGGAGG
AAGCGGACTCAGGTGGCCAACGGCCGGCATCCGGGATTAGAGGACAGACA
GAGGAACAGAAGCCCCAGAAGGAAGTGTGCCTCAAAATCGTCGTGGACAA
CGAGCATGTGCCCCTGATAATGGGTCGCGGTGGATCCAATATCAAGTTGA
TTGAAGAAAAGACCCTGGCCAAGATAAGATTACGAGACAAAGACAGTGGC
CACAAATTCTGCGACATTAGCGGCGTTCCCGATGCGGTTAAGGCGGCTCG
AGCTCTGCTTATCAAGGAAATTGAACGTGCGCCCGTGGTGAAAGTGGAAC
TGCAGGTGCCCCAGAGGCTGGCCAGCAAAATTAACGGACGCGGCGGCGAG
CTCCTCCAGGAGATCCGGAGCAGTTCGCTAGCCAAGCTGAATATCGATTT
AAATGGGCGGAATGGAAAGGCCAAGATTACGATTATCGGCAATCAAAAGC
AAGTGAACATAGCCCGAAAAATGCTGGATGATCAGATAGAGGAGGATGAG
GAACTCGTGCGGTCCATGGAGGAGGTGGAACAGCGTCGGGAGCCCCGCAG
ATCTCCCACCAACAGCATTGCGTCCAGCATGTACTCCTCCCAGACATCCC
TAAGCTCTCACACTCAGCCCAGAGACAAGCTAATGGCCTCCAAGGGCGAG
GGTAAGCCAATGGAGGTTTATGTCTCCGCGGTGGCCTCGCCCACTAAATT
CTGGGTTCAGCTTATCGGACCGCAGTCCAAGAAGCTCGATAGCATGGTCC
AGGAGATGACCAGCTATTATAGTAGTGCTGAAAACAGGGCCAAGCACGTG
CTGACTGCTCCATATGTGGGTCAGATTGTGGCAGCCGTGTTTAAGTTCGA
CGAGAAGTGGTATCGCGCAGAAATCGTGGACATTATGCCTAACCAGTACA
ATCCAAAGGAGCAGGTGATCGATCTCTACTTCGTGGACTATGGAGATAGC
GAATATATTTCGCCAGCTGATATCTGCGAGCTGCGCACTGATTTCCTCAC
GCTCAGGTTCCAAGCCGTTGAATGCTTCTTGGCCAATGTAAAATCTACCA
TCCAGACGGAGCCTATTACGTGGCCAAAGTCTTCAATCGCAAAGTTCGAA
GAGCTGACAGAGGTGGCACATTGGAGAAAGCTGATTGCTCGAGTGGTGAC
CTACAAGGAGCGTCCACGGGCAACCACCGCTGTAAGTGCTGCTGCCAAGG
AGGGAACCCCGCTGCCCGGAGTGGAACTATTCGATCCAGCCGACAACTCT
GAACTAAATATTGCCGATCTGATGATCACCCAGGGCTTTGCTCTGCCCCT
GGACGATTCGTATCCAGTGCGGTCACGCTCCTCGACGCCCTCAAGTAACA
GCGACTCCACCATTGAGGAGTTGTGCGTCAGCAATCCAGTGACTCCGCTT
ACGCCCCACTCACCTATGTCGATGTCCATTGATGTTGACAGCATTACGCA
GGCGGAGAACGAGCACCTCGCCCAGCAGCTGCAGCATTTGCAGCATAAAC
TGAACGGAAACGACATAAAAAACATTAATCCGGCTAAACTGACGGCTACA
GACCTCGAAAACGGGAATAACAATAATGCCAGCACCACAAATGGTGCTAG
CGCGCATTAGGATTTCACATTGTTACTAATTATCCTCGCCTAATTGTTTA
TAAGATGAAGGCTGGACGAGCAGCTCACTACTTGACGTGTACATAAAAGT
ATAGCTCTTAAGGAACTTATTGTATAGGTACGAAAGAAAACTGTTTAATT
TATCGCCGTGACTGATCGACATATCCTAGATCCTAAAAGCTGACGATGGA
ACGGCACAGATCCTTAATTGTTTATAGCAACCTTTGCCATGTTACTTATT
GTTAGCAAGAACAAGAAAAACATTTGTACATCAACAAAAAATACACAAAA
AAGATCACAAACTTAAAAAAAAAAAAAAAAAAAA

GH18329.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7082-RC 2342 CG7082-RC 18..2342 1..2325 11580 99.8 Plus
CG7082-RD 2175 CG7082-RD 42..2175 192..2325 10625 99.8 Plus
CG7082.a 2201 CG7082.a 69..2201 193..2325 10620 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2223434..2224258 584..1408 4125 100 Plus
chr2L 23010047 chr2L 2224473..2225272 1513..2314 3930 99.6 Plus
chr2L 23010047 chr2L 2222971..2223363 192..584 1935 99.5 Plus
chr2L 23010047 chr2L 2221833..2222025 1..193 920 98.4 Plus
chr2L 23010047 chr2L 2224307..2224415 1405..1513 545 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:57:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2223704..2224528 584..1408 4125 100 Plus
2L 23513712 2L 2224743..2225555 1513..2325 4020 99.6 Plus
2L 23513712 2L 2223241..2223633 192..584 1965 100 Plus
2L 23513712 2L 2222106..2222298 1..193 965 100 Plus
2L 23513712 2L 2224577..2224685 1405..1513 545 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2223704..2224528 584..1408 4125 100 Plus
2L 23513712 2L 2224743..2225555 1513..2325 4020 99.6 Plus
2L 23513712 2L 2223241..2223633 192..584 1965 100 Plus
2L 23513712 2L 2222106..2222298 1..193 965 100 Plus
2L 23513712 2L 2224577..2224685 1405..1513 545 100 Plus
Blast to na_te.dros performed on 2019-03-16 07:29:09 has no hits.

GH18329.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:29:48 Download gff for GH18329.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2221833..2222025 1..193 98 -> Plus
chr2L 2222973..2223363 194..584 99 -> Plus
chr2L 2223435..2224256 585..1406 100 -> Plus
chr2L 2224309..2224415 1407..1513 100 -> Plus
chr2L 2224474..2225272 1514..2314 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:47:56 Download gff for GH18329.complete
Subject Subject Range Query Range Percent Splice Strand
CG7082-RB 1..1731 280..2010 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:58:36 Download gff for GH18329.complete
Subject Subject Range Query Range Percent Splice Strand
CG7082-RB 1..1731 280..2010 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:01:39 Download gff for GH18329.complete
Subject Subject Range Query Range Percent Splice Strand
papi-RC 1..1731 280..2010 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:41:48 Download gff for GH18329.complete
Subject Subject Range Query Range Percent Splice Strand
CG7082-RB 1..1731 280..2010 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:34:11 Download gff for GH18329.complete
Subject Subject Range Query Range Percent Splice Strand
papi-RC 1..1731 280..2010 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:13:12 Download gff for GH18329.complete
Subject Subject Range Query Range Percent Splice Strand
CG7082-RC 1..2314 1..2314 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:58:36 Download gff for GH18329.complete
Subject Subject Range Query Range Percent Splice Strand
CG7082-RC 1..2314 1..2314 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:39 Download gff for GH18329.complete
Subject Subject Range Query Range Percent Splice Strand
papi-RC 18..2331 1..2314 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:41:48 Download gff for GH18329.complete
Subject Subject Range Query Range Percent Splice Strand
CG7082-RC 1..2314 1..2314 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:34:11 Download gff for GH18329.complete
Subject Subject Range Query Range Percent Splice Strand
papi-RC 18..2331 1..2314 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:29:48 Download gff for GH18329.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2222106..2222298 1..193 100 -> Plus
2L 2223243..2223633 194..584 100 -> Plus
2L 2223705..2224526 585..1406 100 -> Plus
2L 2224579..2224685 1407..1513 100 -> Plus
2L 2224744..2225544 1514..2314 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:29:48 Download gff for GH18329.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2222106..2222298 1..193 100 -> Plus
2L 2223243..2223633 194..584 100 -> Plus
2L 2223705..2224526 585..1406 100 -> Plus
2L 2224579..2224685 1407..1513 100 -> Plus
2L 2224744..2225544 1514..2314 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:29:48 Download gff for GH18329.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2222106..2222298 1..193 100 -> Plus
2L 2223243..2223633 194..584 100 -> Plus
2L 2223705..2224526 585..1406 100 -> Plus
2L 2224579..2224685 1407..1513 100 -> Plus
2L 2224744..2225544 1514..2314 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:39 Download gff for GH18329.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2222106..2222298 1..193 100 -> Plus
arm_2L 2223243..2223633 194..584 100 -> Plus
arm_2L 2223705..2224526 585..1406 100 -> Plus
arm_2L 2224579..2224685 1407..1513 100 -> Plus
arm_2L 2224744..2225544 1514..2314 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:24:59 Download gff for GH18329.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2223243..2223633 194..584 100 -> Plus
2L 2223705..2224526 585..1406 100 -> Plus
2L 2224579..2224685 1407..1513 100 -> Plus
2L 2224744..2225544 1514..2314 100   Plus
2L 2222106..2222298 1..193 100 -> Plus

GH18329.pep Sequence

Translation from 279 to 2009

> GH18329.pep
MLRNTPFGATPTYKLLLGFGLCSLGGAMLYAYFKTRNDEEEADSGGQRPA
SGIRGQTEEQKPQKEVCLKIVVDNEHVPLIMGRGGSNIKLIEEKTLAKIR
LRDKDSGHKFCDISGVPDAVKAARALLIKEIERAPVVKVELQVPQRLASK
INGRGGELLQEIRSSSLAKLNIDLNGRNGKAKITIIGNQKQVNIARKMLD
DQIEEDEELVRSMEEVEQRREPRRSPTNSIASSMYSSQTSLSSHTQPRDK
LMASKGEGKPMEVYVSAVASPTKFWVQLIGPQSKKLDSMVQEMTSYYSSA
ENRAKHVLTAPYVGQIVAAVFKFDEKWYRAEIVDIMPNQYNPKEQVIDLY
FVDYGDSEYISPADICELRTDFLTLRFQAVECFLANVKSTIQTEPITWPK
SSIAKFEELTEVAHWRKLIARVVTYKERPRATTAVSAAAKEGTPLPGVEL
FDPADNSELNIADLMITQGFALPLDDSYPVRSRSSTPSSNSDSTIEELCV
SNPVTPLTPHSPMSMSIDVDSITQAENEHLAQQLQHLQHKLNGNDIKNIN
PAKLTATDLENGNNNNASTTNGASAH*

GH18329.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14610-PA 578 GF14610-PA 1..578 1..576 2555 83.4 Plus
Dana\GF20944-PA 610 GF20944-PA 316..571 140..425 196 26.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24838-PA 577 GG24838-PA 1..577 1..576 2978 96 Plus
Dere\GG18497-PA 588 GG18497-PA 294..549 140..425 191 26.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:58:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13085-PA 582 GH13085-PA 1..563 1..563 2238 76.1 Plus
Dgri\GH24358-PA 627 GH24358-PA 336..558 144..388 170 26.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
papi-PD 576 CG7082-PD 1..576 1..576 2940 100 Plus
papi-PB 576 CG7082-PB 1..576 1..576 2940 100 Plus
papi-PC 576 CG7082-PC 1..576 1..576 2940 100 Plus
papi-PA 576 CG7082-PA 1..576 1..576 2940 100 Plus
spoon-PA 585 CG3249-PA 291..546 140..425 185 25.8 Plus
spoon-PE 585 CG3249-PE 291..546 140..425 185 25.8 Plus
spoon-PD 585 CG3249-PD 291..546 140..425 185 25.8 Plus
spoon-PC 607 CG3249-PC 313..568 140..425 185 25.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21571-PA 575 GI21571-PA 1..574 1..575 2308 74.2 Plus
Dmoj\GI11050-PA 681 GI11050-PA 389..642 144..425 206 28.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18709-PA 575 GL18709-PA 1..575 1..576 2344 79.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20088-PA 574 GA20088-PA 1..574 1..576 2386 80 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18322-PA 576 GM18322-PA 1..576 1..576 3074 99 Plus
Dsec\GM12645-PA 573 GM12645-PA 283..534 144..425 189 25.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23138-PA 576 GD23138-PA 1..576 1..576 3047 98.3 Plus
Dsim\GD16260-PA 593 GD16260-PA 299..554 140..425 193 25.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17491-PA 579 GJ17491-PA 1..575 1..572 2274 76.7 Plus
Dvir\GJ14809-PA 655 GJ14809-PA 364..605 144..411 191 27.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15145-PA 579 GK15145-PA 1..561 1..559 2200 74.8 Plus
Dwil\GK25472-PA 595 GK25472-PA 299..556 138..425 192 26.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18040-PA 578 GE18040-PA 1..578 1..576 2972 95.8 Plus
Dyak\GE16815-PA 590 GE16815-PA 296..551 140..425 186 25.9 Plus

GH18329.hyp Sequence

Translation from 279 to 2009

> GH18329.hyp
MLRNTPFGATPTYKLLLGFGLCSLGGAMLYAYFKTRNDEEEADSGGQRPA
SGIRGQTEEQKPQKEVCLKIVVDNEHVPLIMGRGGSNIKLIEEKTLAKIR
LRDKDSGHKFCDISGVPDAVKAARALLIKEIERAPVVKVELQVPQRLASK
INGRGGELLQEIRSSSLAKLNIDLNGRNGKAKITIIGNQKQVNIARKMLD
DQIEEDEELVRSMEEVEQRREPRRSPTNSIASSMYSSQTSLSSHTQPRDK
LMASKGEGKPMEVYVSAVASPTKFWVQLIGPQSKKLDSMVQEMTSYYSSA
ENRAKHVLTAPYVGQIVAAVFKFDEKWYRAEIVDIMPNQYNPKEQVIDLY
FVDYGDSEYISPADICELRTDFLTLRFQAVECFLANVKSTIQTEPITWPK
SSIAKFEELTEVAHWRKLIARVVTYKERPRATTAVSAAAKEGTPLPGVEL
FDPADNSELNIADLMITQGFALPLDDSYPVRSRSSTPSSNSDSTIEELCV
SNPVTPLTPHSPMSMSIDVDSITQAENEHLAQQLQHLQHKLNGNDIKNIN
PAKLTATDLENGNNNNASTTNGASAH*

GH18329.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
papi-PD 576 CG7082-PD 1..576 1..576 2940 100 Plus
papi-PB 576 CG7082-PB 1..576 1..576 2940 100 Plus
papi-PC 576 CG7082-PC 1..576 1..576 2940 100 Plus
papi-PA 576 CG7082-PA 1..576 1..576 2940 100 Plus
spoon-PA 585 CG3249-PA 291..546 140..425 185 25.8 Plus