Clone GH18334 Report

Search the DGRC for GH18334

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:183
Well:34
Vector:pOT2
Associated Gene/TranscriptCG6255-RA
Protein status:GH18334.pep: gold
Preliminary Size:1305
Sequenced Size:1188

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6255 2001-01-01 Release 2 assignment
CG6255 2001-10-10 Blastp of sequenced clone
CG6255 2003-01-01 Sim4 clustering to Release 3
CG6255 2008-04-29 Release 5.5 accounting
CG6255 2008-08-15 Release 5.9 accounting
CG6255 2008-12-18 5.12 accounting

Clone Sequence Records

GH18334.complete Sequence

1188 bp (1188 high quality bases) assembled on 2001-10-10

GenBank Submission: AY089508

> GH18334.complete
CTCCATTCTAAATCAGGCCCCAAAAGTTTAATTTTTTGGCCCAAAAACAA
ATCCACCAGCAATCCAAGACTTAATTCCCACAAAATGTCACTAAATCGAG
GAAGCAAGATGCTCCTGCGGGCGTTAACGCCCCAAATTTTGAGGCGTGGC
AAGGCGGACTATGGCAAGACGGTGTGCAACCTGAAGATCAACAAGGCAAC
AAAGGTTCTAGTCCAGGGATTCACCGGCAAGCAGGCCACTTTCCACTCGG
AGGAGTCCATAAAGTACGGAACCAATATAGTTGGCGGTGTGAATCCCAAA
AAGGGAGGTACGGAGCATCTGGGCAAGCCCGTATTCAAATCGGTGGCAGA
AGCTGTGGAGAAGGCGAAGCCAGATGCCACGGTGATCTTTATACCACCTC
CATCCGCCGCCGAGGGTATTTGCGCGGCTATCGAGAGTGAAATTGGCTTG
ATTGTGGCCATCACCGAGGGTATTCCCCAGGCGGATATGGTGCGGATATC
GCAAATGCTGAATTGCCAGGAGAAGTCCCGCCTGCTGGGACCCAACTGTC
CGGGAATCATCTCGCCGGATCAGTGCAAAATCGGAATAATGCCGGGAGAT
ATCCACAAGCGAGGAGTGGTGGGCATAGTCTCGCGGTCGGGAACCCTGAC
CTACGAGTCCGTCCATCAGACCACCAACGTGGGATTGGGTCAGGCTCTTT
GCGTTGGCCTCGGCGGGGATCCCTTTAACGGAACTAGCTTCATAGACGCC
CTCAAAGTGTTTCTGTCCGACAAGGAGATCAAGGGCATTGTCATGATTGG
AGAGATTGGCGGATCCGCCGAGGAAGAGGCTGCCGATTTCCTTAAGGAGA
AGAACACTGGCTGCGAGGCCAAGCCAGTAGTTGGCTTCATTGCTGGACAG
ACTGCTCCACCGGGTCGTCGAATGGGTCACGCCGGCGCCATCATTTCCGG
TGGCAAGGGAGCGGCCAAGGACAAGGTGGCCGCCCTGGAGAAAGCGGGAG
TCCGTATGACCGCCAATCCCTGCCACCTGGGCTCCACGCTCCTCGAGGAA
ATGATCCGCCTGAAACTGGTGCCCAAGCCGAACAAAAAGAAGGCTCAGGC
CGGGAAGAAGTAGGAGTGGCGGAACAAGTTATTGATGCCAATAAACTAAC
TTAGTGCTCTTTAAATTGCTAAAAAAAAAAAAAAAAAA

GH18334.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG6255-RA 1188 CG6255-RA 19..1188 1..1170 5850 100 Plus
Scsalpha-RA 1673 Scsalpha-RA 680..904 523..747 375 77.7 Plus
Scsalpha.a 1495 Scsalpha.a 570..794 523..747 375 77.7 Plus
Scsalpha-RA 1673 Scsalpha-RA 932..1159 775..1002 330 76.3 Plus
Scsalpha.a 1495 Scsalpha.a 903..1039 866..1002 280 80.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 15285753..15286922 1170..1 5775 99.6 Minus
chr3L 24539361 chr3L 3816877..3817142 571..836 295 74.1 Plus
chr3L 24539361 chr3L 3817234..3817370 866..1002 265 79.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:57:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19461875..19463048 1174..1 5870 100 Minus
3L 28110227 3L 3817434..3817699 571..836 295 74.1 Plus
3L 28110227 3L 3817791..3817927 866..1002 280 80.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 19202706..19203879 1174..1 5870 100 Minus
3L 28103327 3L 3817434..3817610 571..747 285 77.4 Plus
3L 28103327 3L 3817791..3817927 866..1002 280 80.2 Plus
Blast to na_te.dros performed on 2019-03-16 23:34:31 has no hits.

GH18334.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:35:25 Download gff for GH18334.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 15285753..15286922 1..1170 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:47:57 Download gff for GH18334.complete
Subject Subject Range Query Range Percent Splice Strand
CG6255-RA 1..1029 85..1113 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:51:40 Download gff for GH18334.complete
Subject Subject Range Query Range Percent Splice Strand
CG6255-RA 1..1029 85..1113 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:44:53 Download gff for GH18334.complete
Subject Subject Range Query Range Percent Splice Strand
CG6255-RA 1..1029 85..1113 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:20:57 Download gff for GH18334.complete
Subject Subject Range Query Range Percent Splice Strand
CG6255-RA 1..1029 85..1113 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:52:11 Download gff for GH18334.complete
Subject Subject Range Query Range Percent Splice Strand
CG6255-RA 1..1029 85..1113 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:36:40 Download gff for GH18334.complete
Subject Subject Range Query Range Percent Splice Strand
CG6255-RA 19..1188 1..1170 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:51:40 Download gff for GH18334.complete
Subject Subject Range Query Range Percent Splice Strand
CG6255-RA 19..1188 1..1170 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:53 Download gff for GH18334.complete
Subject Subject Range Query Range Percent Splice Strand
CG6255-RA 19..1188 1..1170 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:20:57 Download gff for GH18334.complete
Subject Subject Range Query Range Percent Splice Strand
CG6255-RA 19..1188 1..1170 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:52:11 Download gff for GH18334.complete
Subject Subject Range Query Range Percent Splice Strand
CG6255-RA 19..1188 1..1170 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:35:25 Download gff for GH18334.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19461879..19463048 1..1170 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:35:25 Download gff for GH18334.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19461879..19463048 1..1170 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:35:25 Download gff for GH18334.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19461879..19463048 1..1170 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:53 Download gff for GH18334.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15287601..15288770 1..1170 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:57:30 Download gff for GH18334.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19202710..19203879 1..1170 100   Minus

GH18334.hyp Sequence

Translation from 0 to 1112

> GH18334.hyp
LHSKSGPKSLIFWPKNKSTSNPRLNSHKMSLNRGSKMLLRALTPQILRRG
KADYGKTVCNLKINKATKVLVQGFTGKQATFHSEESIKYGTNIVGGVNPK
KGGTEHLGKPVFKSVAEAVEKAKPDATVIFIPPPSAAEGICAAIESEIGL
IVAITEGIPQADMVRISQMLNCQEKSRLLGPNCPGIISPDQCKIGIMPGD
IHKRGVVGIVSRSGTLTYESVHQTTNVGLGQALCVGLGGDPFNGTSFIDA
LKVFLSDKEIKGIVMIGEIGGSAEEEAADFLKEKNTGCEAKPVVGFIAGQ
TAPPGRRMGHAGAIISGGKGAAKDKVAALEKAGVRMTANPCHLGSTLLEE
MIRLKLVPKPNKKKAQAGKK*

GH18334.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6255-PA 342 CG6255-PA 1..342 29..370 1751 100 Plus
Scsalpha-PB 328 CG1065-PB 20..328 49..357 1112 67.6 Plus
Scsalpha-PA 328 CG1065-PA 20..328 49..357 1112 67.6 Plus
ATPCL-PF 1095 CG8322-PF 546..778 110..333 214 30 Plus
ATPCL-PG 1096 CG8322-PG 547..779 110..333 214 30 Plus

GH18334.pep Sequence

Translation from 84 to 1112

> GH18334.pep
MSLNRGSKMLLRALTPQILRRGKADYGKTVCNLKINKATKVLVQGFTGKQ
ATFHSEESIKYGTNIVGGVNPKKGGTEHLGKPVFKSVAEAVEKAKPDATV
IFIPPPSAAEGICAAIESEIGLIVAITEGIPQADMVRISQMLNCQEKSRL
LGPNCPGIISPDQCKIGIMPGDIHKRGVVGIVSRSGTLTYESVHQTTNVG
LGQALCVGLGGDPFNGTSFIDALKVFLSDKEIKGIVMIGEIGGSAEEEAA
DFLKEKNTGCEAKPVVGFIAGQTAPPGRRMGHAGAIISGGKGAAKDKVAA
LEKAGVRMTANPCHLGSTLLEEMIRLKLVPKPNKKKAQAGKK*

GH18334.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22035-PA 356 GF22035-PA 32..346 17..331 1338 82.5 Plus
Dana\GF24225-PA 328 GF24225-PA 20..328 21..329 1017 67.3 Plus
Dana\GF13329-PA 1097 GF13329-PA 548..810 82..331 210 29.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15952-PA 342 GG15952-PA 1..342 1..342 1734 97.1 Plus
Dere\GG15160-PA 328 GG15160-PA 20..328 21..329 1061 67.3 Plus
Dere\GG22311-PA 1095 GG22311-PA 546..808 82..331 203 28.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12731-PA 334 GH12731-PA 1..334 1..336 1267 75 Plus
Dgri\GH16428-PA 328 GH16428-PA 20..328 21..329 1057 67.3 Plus
Dgri\GH19829-PA 1100 GH19829-PA 551..813 82..331 201 27.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
Scsalpha2-PA 342 CG6255-PA 1..342 1..342 1751 100 Plus
Scsalpha1-PB 328 CG1065-PB 20..328 21..329 1112 67.6 Plus
Scsalpha1-PA 328 CG1065-PA 20..328 21..329 1112 67.6 Plus
ATPCL-PF 1095 CG8322-PF 546..778 82..305 214 30 Plus
ATPCL-PG 1096 CG8322-PG 547..779 82..305 214 30 Plus
ATPCL-PE 1112 CG8322-PE 563..795 82..305 214 30 Plus
ATPCL-PD 1112 CG8322-PD 563..795 82..305 214 30 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14987-PA 337 GI14987-PA 1..333 1..329 1242 74.8 Plus
Dmoj\GI12510-PA 328 GI12510-PA 20..328 21..329 1052 67.3 Plus
Dmoj\GI20417-PA 1097 GI20417-PA 548..810 82..331 206 28.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14403-PA 323 GL14403-PA 1..313 1..331 1193 73.6 Plus
Dper\GL25295-PA 328 GL25295-PA 20..328 21..329 1051 67.3 Plus
Dper\GL20648-PA 1069 GL20648-PA 482..800 27..331 209 27 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23007-PA 340 GA23007-PA 1..330 1..331 1300 78.1 Plus
Dpse\GA23751-PA 328 GA23751-PA 20..328 21..329 1051 67.3 Plus
Dpse\GA20986-PA 1087 GA20986-PA 482..800 27..331 209 27 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26905-PA 342 GM26905-PA 1..342 1..342 1753 98 Plus
Dsec\GM14589-PA 328 GM14589-PA 20..328 21..329 1016 67.6 Plus
Dsec\GM20101-PA 1095 GM20101-PA 546..808 82..331 207 28.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20111-PA 421 GD20111-PA 134..421 55..342 1476 98.3 Plus
Dsim\GD13780-PA 328 GD13780-PA 20..328 21..329 1016 67.6 Plus
Dsim\GD25577-PA 1095 GD25577-PA 546..808 82..331 206 28.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15342-PA 344 GJ15342-PA 23..333 19..329 1327 79.7 Plus
Dvir\GJ12416-PA 328 GJ12416-PA 20..328 21..329 1055 67.3 Plus
Dvir\GJ20089-PA 1098 GJ20089-PA 549..811 82..331 207 28.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16245-PA 351 GK16245-PA 3..345 2..341 1282 74.1 Plus
Dwil\GK20526-PA 328 GK20526-PA 20..328 21..329 1050 66.7 Plus
Dwil\GK10643-PA 1095 GK10643-PA 546..808 82..331 212 28.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25125-PA 342 GE25125-PA 1..342 1..342 1703 94.4 Plus
Dyak\Scsalpha-PA 328 GE21380-PA 20..328 21..329 1057 67.3 Plus
Dyak\GE14108-PA 1096 GE14108-PA 547..809 82..331 206 28.8 Plus