Clone GH18356 Report

Search the DGRC for GH18356

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:183
Well:56
Vector:pOT2
Associated Gene/TranscriptCG8708-RA
Protein status:GH18356.pep: validated full length
Preliminary Size:1675
Sequenced Size:1664

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8708 2001-01-01 Release 2 assignment
CG8708 2001-07-04 Blastp of sequenced clone
CG8708 2008-04-29 Release 5.5 accounting
CG8708 2008-08-15 Release 5.9 accounting
CG8708 2008-12-18 5.12 accounting

Clone Sequence Records

GH18356.complete Sequence

1664 bp (1664 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051529

> GH18356.complete
GTTCAGTTGCGGGTGAAAATAGAGTCTTTGACGTACGTGCAAGACAATAA
TTGGACACATAACCCACTTCTTGTTTGCACAAGTGAACCATTCTGTGTTC
CCAGTTGAAAGGGAAACCCCAATAAGTGCAGAATGACGAGTGCAAGTCTA
TTGTCGCGTTCCCTGCTAACAGAAGCTCCGCGTTCTAAGAATCGCTCGGT
GTTTACCTTGATTGCTGGTTTGGTGGTCGGCTACTGCCTGGCTCAAATCT
TCTCCAGCATTGCGCCGCACGAGAGTCTCTATCCGTATCTCAGCAGACGG
TTCAGCGATTCCCAGGTGGCCACCGGTGGTCAATTGGCTCCGGAGCAGAG
CGGGTTGAAGCATGATCATCGCAACGACAACGTCAGCGTGGCCGAGCAGT
TGAAGAAGGAGGTACGCATCCTCTGCTGGGTGATGACCAATCCCACAAAC
CACAAGAAGAAGGCTCGCCATGTGAAGCGAACCTGGGGCAAGCGCTGCAA
CATCTTGCTCTTCATGAGTTCCGGCGCGGATGAGGAGCTGCCCACCGTGA
AGCTCGACGTGGGCGAGGGACGGGAGAATCTATGGGCCAAGGTCAAGGAG
GCGTTCAAGTACGTCTATCATCACCACTATAACGACGCCGACTTCTTCTA
CAAGGCCGATGACGACACTTACGCCGTGATCGAGAACATGCGGTATATGC
TCTATCCGTACAATCCCGAAACACCCGTGCACTTCGGATTCAAGTTCAAG
CCCTTCGTGAAGCAGGGCTACATGTCCGGCGGAGCGGGCTACATACTCAG
TCGGGAGGCCCTGCGTCGCTTCGTGGTCGAGGGCATTCCGAATCCCAAGA
TGTGCCTGCCGGGCACGGTGGTCAACGAGGACATCGAAATCGGGCGATGC
ATGGAGAACCTGAACGTCACCGCCGGCGATTCCAGGGACGAAATCGGTCG
CGGTCGCATGTTTCCCTTCATACCGGAGCATCACTTGATCCCAGCCAAGG
CGGATAAAAACTTTTGGTACTGGAACTACCTTTACTACAAGACGGATGAC
GTAAGTTTCGCCTGATAAGGGATAGGTATTCTTAACATCTTGTGTTCCGA
CAGGGTCTCGACTGCTGCTCGGACTTGGCCATCTCCTTTCACTACGTAGC
TCCGAATTCCTTCTATGTCCTGGACTATCTCATCTACCACTTGAAACCCT
ACGGCCTACTGCGATCCCTGGAGCCTCTGCCCGCCAAACTCAAAGTGGGT
CAGTTTCTGCCGCCTCCCGTGGAGGCCAGGGGGCGCCTGGCCAGTAACGA
GGATTCCGCCGATGATTACGACAGGATCTATACGACCACGACCGAAAAGC
CAAAGGAGCCCGATGCTCGGGAAATGGACTCCAAGGAGGTGGAAAAAGAG
GATGCCAAATACAGGGAAAAGCTTTCAAAGGAGGACGAGGAACGCGAAGA
CTCGCGAAAAACTGACAATGATTCGGAGTATACTGAGGAGGAAACGGAAA
AGCGTTCCAAGTCCAAGGAAACATCGAAAGAAAATTAAAATTTATTGAGT
TTACTTGGCAGGCTTTGGAACTGAGCTGTTTCTGAGTCTACGCCGCTCAT
CCGGTTTATACATTTTAATAAAAATTTTCTTAGATTATTATTTTAAAAAA
AAAAAAAAAAAAAA

GH18356.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG8708-RA 1821 CG8708-RA 117..1761 1..1645 8225 100 Plus
CG8708-RB 1802 CG8708-RB 141..1191 1..1051 5255 100 Plus
CG8708-RB 1802 CG8708-RB 1191..1732 1104..1645 2710 100 Plus
C1GalTA-RA 2014 C1GalTA-RA 749..1046 558..855 500 77.8 Plus
C1GalTA-RA 2014 C1GalTA-RA 612..731 421..540 270 81.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4046980..4048450 1644..174 7310 99.8 Minus
chr2R 21145070 chr2R 4048552..4048726 175..1 875 100 Minus
chr2L 23010047 chr2L 8943345..8943779 855..421 705 77.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:57:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8159460..8160931 1645..174 7360 100 Minus
2R 25286936 2R 8161033..8161207 175..1 875 100 Minus
2L 23513712 2L 8944428..8944862 855..421 705 77.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8160659..8162130 1645..174 7360 100 Minus
2R 25260384 2R 8162232..8162406 175..1 875 100 Minus
2L 23513712 2L 8944428..8944725 855..558 500 77.8 Minus
2L 23513712 2L 8944743..8944862 540..421 270 81.6 Minus
Blast to na_te.dros performed on 2019-03-16 11:23:14 has no hits.

GH18356.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:24:32 Download gff for GH18356.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4046980..4048448 176..1644 99 <- Minus
chr2R 4048552..4048726 1..175 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:47:59 Download gff for GH18356.complete
Subject Subject Range Query Range Percent Splice Strand
CG8708-RA 1..933 133..1065 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:25:48 Download gff for GH18356.complete
Subject Subject Range Query Range Percent Splice Strand
CG8708-RB 926..1353 1111..1538 100   Plus
CG8708-RB 1..925 133..1060 99 == Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:27:25 Download gff for GH18356.complete
Subject Subject Range Query Range Percent Splice Strand
CG8708-RB 1..925 133..1060 99 == Plus
CG8708-RB 926..1353 1111..1538 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:58:52 Download gff for GH18356.complete
Subject Subject Range Query Range Percent Splice Strand
CG8708-RA 1..933 133..1065 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:15:00 Download gff for GH18356.complete
Subject Subject Range Query Range Percent Splice Strand
CG8708-RB 1..925 133..1060 99 == Plus
CG8708-RB 926..1353 1111..1538 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:24:29 Download gff for GH18356.complete
Subject Subject Range Query Range Percent Splice Strand
CG8708-RA 24..1667 1..1644 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:25:48 Download gff for GH18356.complete
Subject Subject Range Query Range Percent Splice Strand
CG8708-RB 28..1084 1..1060 99 == Plus
CG8708-RB 1085..1618 1111..1644 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:27:25 Download gff for GH18356.complete
Subject Subject Range Query Range Percent Splice Strand
CG8708-RB 29..1085 1..1060 99 == Plus
CG8708-RB 1086..1619 1111..1644 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:58:52 Download gff for GH18356.complete
Subject Subject Range Query Range Percent Splice Strand
CG8708-RA 24..1667 1..1644 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:15:00 Download gff for GH18356.complete
Subject Subject Range Query Range Percent Splice Strand
CG8708-RB 29..1085 1..1060 99 == Plus
CG8708-RB 1086..1619 1111..1644 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:24:32 Download gff for GH18356.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8159461..8160929 176..1644 100 <- Minus
2R 8161033..8161207 1..175 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:24:32 Download gff for GH18356.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8159461..8160929 176..1644 100 <- Minus
2R 8161033..8161207 1..175 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:24:32 Download gff for GH18356.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8159461..8160929 176..1644 100 <- Minus
2R 8161033..8161207 1..175 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:27:25 Download gff for GH18356.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4046966..4048434 176..1644 100 <- Minus
arm_2R 4048538..4048712 1..175 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:36:40 Download gff for GH18356.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8160660..8162128 176..1644 100 <- Minus
2R 8162232..8162406 1..175 100   Minus

GH18356.pep Sequence

Translation from 132 to 1064

> GH18356.pep
MTSASLLSRSLLTEAPRSKNRSVFTLIAGLVVGYCLAQIFSSIAPHESLY
PYLSRRFSDSQVATGGQLAPEQSGLKHDHRNDNVSVAEQLKKEVRILCWV
MTNPTNHKKKARHVKRTWGKRCNILLFMSSGADEELPTVKLDVGEGRENL
WAKVKEAFKYVYHHHYNDADFFYKADDDTYAVIENMRYMLYPYNPETPVH
FGFKFKPFVKQGYMSGGAGYILSREALRRFVVEGIPNPKMCLPGTVVNED
IEIGRCMENLNVTAGDSRDEIGRGRMFPFIPEHHLIPAKADKNFWYWNYL
YYKTDDVSFA*

GH18356.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14913-PA 452 GF14913-PA 13..316 13..306 1338 80.9 Plus
Dana\GF15693-PA 390 GF15693-PA 1..312 1..306 1062 62.3 Plus
Dana\GF16008-PA 358 GF16008-PA 24..294 16..304 620 44.4 Plus
Dana\GF24418-PA 341 GF24418-PA 3..262 21..295 581 43.6 Plus
Dana\GF24419-PA 337 GF24419-PA 3..266 21..303 560 42.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10669-PA 453 GG10669-PA 1..308 1..306 1381 82.2 Plus
Dere\GG24047-PA 388 GG24047-PA 1..311 1..306 1075 62.2 Plus
Dere\GG18081-PA 374 GG18081-PA 60..309 59..302 599 47.8 Plus
Dere\GG24890-PA 386 GG24890-PA 78..296 86..308 575 48.9 Plus
Dere\GG14745-PA 342 GG14745-PA 3..246 21..279 550 41.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12988-PA 420 GH12988-PA 10..304 15..306 1166 72.3 Plus
Dgri\GH12348-PA 382 GH12348-PA 2..285 26..306 1151 74 Plus
Dgri\GH25123-PA 389 GH25123-PA 1..312 1..306 1075 62.6 Plus
Dgri\GH25081-PA 695 GH25081-PA 338..613 18..306 975 61.5 Plus
Dgri\GH25081-PA 695 GH25081-PA 6..285 11..304 938 59.7 Plus
Dgri\GH23497-PA 274 GH23497-PA 1..268 26..308 928 61.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8708-PD 450 CG8708-PD 1..306 1..306 1648 100 Plus
CG8708-PB 450 CG8708-PB 1..306 1..306 1648 100 Plus
CG8708-PC 444 CG8708-PC 1..300 7..306 1591 97.7 Plus
C1GalTA-PA 388 CG9520-PA 1..311 1..306 1066 62.2 Plus
C1GalTA-PC 388 CG9520-PC 1..311 1..306 1066 62.2 Plus
C1GalTA-PB 388 CG9520-PB 1..311 1..306 1066 62.2 Plus
tgy-PE 373 CG7440-PE 86..308 83..302 598 50.4 Plus
tgy-PC 373 CG7440-PC 86..308 83..302 598 50.4 Plus
CG2975-PA 385 CG2975-PA 7..294 17..308 572 41.9 Plus
CG34056-PA 341 CG34056-PA 3..244 21..278 531 42.5 Plus
CG34057-PB 344 CG34057-PB 61..275 86..303 516 46.6 Plus
CG34057-PA 355 CG34057-PA 72..286 86..303 516 46.6 Plus
CG18558-PB 588 CG18558-PB 309..529 83..304 470 42.7 Plus
CG2983-PB 344 CG2983-PB 62..277 83..310 460 41.3 Plus
CG3119-PA 355 CG3119-PA 62..250 95..281 381 43.7 Plus
CG34452-PC 318 CG34452-PC 53..267 95..308 344 32.9 Plus
CG34452-PB 318 CG34452-PB 53..267 95..308 344 32.9 Plus
CG3119-PB 184 CG3119-PB 62..177 95..208 277 46.6 Plus
CG34451-PC 253 CG34451-PC 7..189 106..286 277 32.8 Plus
CG34451-PA 253 CG34451-PA 7..189 106..286 277 32.8 Plus
CG18558-PB 588 CG18558-PB 11..241 36..297 206 25.5 Plus
CG9220-PD 832 CG9220-PD 75..243 100..258 152 29.9 Plus
CG9220-PC 832 CG9220-PC 75..243 100..258 152 29.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17446-PA 390 GI17446-PA 3..300 7..306 1136 70.2 Plus
Dmoj\GI12045-PA 391 GI12045-PA 1..312 1..306 1101 64.5 Plus
Dmoj\GI12068-PA 352 GI12068-PA 21..265 61..306 1095 80.5 Plus
Dmoj\GI12057-PA 440 GI12057-PA 35..265 75..305 968 71.4 Plus
Dmoj\GI12912-PA 264 GI12912-PA 10..263 21..308 873 59.4 Plus
Dmoj\GI12057-PA 440 GI12057-PA 231..360 185..306 360 55 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26713-PA 452 GL26713-PA 14..314 14..306 1286 81.7 Plus
Dper\GL25549-PA 390 GL25549-PA 1..311 1..306 1071 61.9 Plus
Dper\GL14674-PA 303 GL14674-PA 3..248 57..302 610 47 Plus
Dper\GL15447-PA 379 GL15447-PA 75..297 81..308 605 49.6 Plus
Dper\GL16899-PA 341 GL16899-PA 3..256 21..287 577 44.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA29031-PA 452 GA29031-PA 14..314 14..306 1286 81.7 Plus
Dpse\GA21851-PA 390 GA21851-PA 1..311 1..306 1071 61.9 Plus
Dpse\GA20354-PA 369 GA20354-PA 61..306 59..304 621 47 Plus
Dpse\GA28803-PA 347 GA28803-PA 75..295 81..306 609 50.4 Plus
Dpse\GA23793-PA 340 GA23793-PA 3..256 21..287 576 44.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20714-PA 446 GM20714-PA 1..309 1..306 1613 95.8 Plus
Dsec\GM12650-PA 379 GM12650-PA 1..302 11..306 1043 61.3 Plus
Dsec\GM22770-PA 373 GM22770-PA 59..308 59..302 601 47.4 Plus
Dsec\GM18370-PA 383 GM18370-PA 78..292 87..308 557 48.6 Plus
Dsec\GM14363-PA 340 GM14363-PA 3..246 21..279 545 40.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10181-PA 446 GD10181-PA 1..309 1..306 1632 97.1 Plus
Dsim\GD22375-PA 388 GD22375-PA 1..311 1..306 1065 61.5 Plus
Dsim\GD24465-PA 373 GD24465-PA 59..308 59..302 602 47.4 Plus
Dsim\GD23186-PA 386 GD23186-PA 78..295 87..308 576 49.5 Plus
Dsim\GD13582-PA 333 GD13582-PA 3..246 21..279 552 42.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14139-PA 441 GJ14139-PA 1..302 6..306 1229 73.4 Plus
Dvir\GJ14135-PA 386 GJ14135-PA 1..312 1..306 1077 63.3 Plus
Dvir\GJ14138-PA 335 GJ14138-PA 16..271 25..306 1047 70.2 Plus
Dvir\GJ14141-PA 589 GJ14141-PA 296..531 70..303 603 48.5 Plus
Dvir\GJ15256-PA 373 GJ15256-PA 73..310 60..302 591 46.6 Plus
Dvir\GJ14141-PA 589 GJ14141-PA 27..246 30..301 212 25.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24753-PA 440 GK24753-PA 3..309 2..306 1251 74.1 Plus
Dwil\GK24752-PA 435 GK24752-PA 3..310 2..306 1245 72.8 Plus
Dwil\GK24751-PA 324 GK24751-PA 7..267 49..306 1103 76.7 Plus
Dwil\GK14790-PA 390 GK14790-PA 1..312 1..306 1058 61.3 Plus
Dwil\GK14791-PA 371 GK14791-PA 1..312 1..306 1054 61.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23251-PA 451 GE23251-PA 1..309 1..306 1452 92.9 Plus
Dyak\GE10709-PA 388 GE10709-PA 1..311 1..306 1080 62.5 Plus
Dyak\GE15477-PA 375 GE15477-PA 82..310 71..302 593 49.2 Plus
Dyak\GE18184-PA 385 GE18184-PA 76..294 86..308 572 49.1 Plus
Dyak\GE21107-PA 342 GE21107-PA 3..246 21..279 550 42.1 Plus

GH18356.hyp Sequence

Translation from 132 to 1064

> GH18356.hyp
MTSASLLSRSLLTEAPRSKNRSVFTLIAGLVVGYCLAQIFSSIAPHESLY
PYLSRRFSDSQVATGGQLAPEQSGLKHDHRNDNVSVAEQLKKEVRILCWV
MTNPTNHKKKARHVKRTWGKRCNILLFMSSGADEELPTVKLDVGEGRENL
WAKVKEAFKYVYHHHYNDADFFYKADDDTYAVIENMRYMLYPYNPETPVH
FGFKFKPFVKQGYMSGGAGYILSREALRRFVVEGIPNPKMCLPGTVVNED
IEIGRCMENLNVTAGDSRDEIGRGRMFPFIPEHHLIPAKADKNFWYWNYL
YYKTDDVSFA*

GH18356.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8708-PD 450 CG8708-PD 1..306 1..306 1648 100 Plus
CG8708-PB 450 CG8708-PB 1..306 1..306 1648 100 Plus
CG8708-PC 444 CG8708-PC 1..300 7..306 1591 97.7 Plus
C1GalTA-PA 388 CG9520-PA 1..311 1..306 1066 62.2 Plus
C1GalTA-PC 388 CG9520-PC 1..311 1..306 1066 62.2 Plus