Clone GH18370 Report

Search the DGRC for GH18370

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:183
Well:70
Vector:pOT2
Associated Gene/TranscriptCG11779-RC
Protein status:GH18370.pep: validated not full length
Preliminary Size:2291
Sequenced Size:2443

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5835 2001-01-01 Release 2 assignment
CG11779 2001-01-01 Release 2 assignment
CG11779 2001-09-19 Blastp of sequenced clone
CG11779 2008-04-29 Release 5.5 accounting
CG11779 2008-08-15 Release 5.9 accounting
CG5835 2008-08-15 Release 5.9 accounting
CG11779 2008-12-18 5.12 accounting
CG5835 2008-12-18 5.12 accounting

Clone Sequence Records

GH18370.complete Sequence

2443 bp (2443 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058409

> GH18370.complete
ACAGTTCGAAATTCAAAGTGTTCCTTTTTCAAAATTTAGTAAAGATTGTA
GATCAATTGTAGATATATCGAAATTTTTCGGCCGCAAGCGAACATTTTAC
GAAATGAAGGCGACCAGTTGCAGACCAATTCCATTCATCAACTTTCGGAT
TGTAAGATATTTCTATCGGCCACGACGATTGAACAAGTATTACGATATTT
ACAGAATAGCTGCCCTTGTGCGGGATCGCGCCTGTCTCTTCACGTGCCAG
CAGGCCTCGCAGAACCTGCAGCAGCAGCAGCCCCGCTTTTATAGTGCGCC
AGGTCGCAGGGCCGGCTTCTTCTCGCAGTTCTTCGACAACATGAAGGCGG
AGATGGATAAGAACAAGGAGATCAAGGACAATATCCGAAAGTTCCGTGAG
GAGGCCCAGAAGCTGGAAGAATCGGATGCCCTGAAATCGGCGCGGCAAAA
GTTTAACATTGTCGAATCGGAGGCGCAAAAGTCGTCTAGCATGCTAAAGG
AGCAGCTGGGCGCCATCAAGGAGCGCGTAGGCGATGTTCTGGAGGACGCC
AGCAAATCCCACCTGGCCAAAAAGGTTACCGAGGAGCTCTCGAAGAAGGC
TAGGGGGGTCAGCGACACGATCTCCGACACCAGTGGCAAGCTGGGCCAGA
CCAGCGCATTCCAGGCTATCTCTAACACGACGACGACCATCAAGAAGGAG
ATGGACAGCGCGAGCATAGAGAATCGTGTCTATCGTGCTCCTGCCAAGTT
GCGAAAGCGCGTCCAGCTCGTCATGAGCGATAGTGATCGCGTTGTGGAGC
CCAACACGGAAGCCACTGGTATGGAGCTGCACAAGGACTCCAAGTTCTAC
GAGTCGTGGGAGAACTTCAAGAACAACAATACCTACGTGAACAAGGTGCT
TGACTGGAAGGTTAAATACGACGAGTCCGAGAACCCTGTTATTCGTGCCT
CCCGCCTGCTGACCGATAAAGTGTCCGACGTCATGGGTGGACTCTTTTCA
AAGACAGAGCTTTCGGAAACGATGACGGAGCTGGTGAAAATCGATCCGAG
CTTTGATCAGAAGGATTTCCTCCGCGATTGCGAAACGGACATCATTCCAA
ATATTCTGGAATCGATTGTCCGTGGGGATCTGGAGATTCTGAAGGATTGG
TGCTTTGAGAGCACTTTCAATATTATCGCAAATCCCATTAAGGAGGCTAA
GAAGGCCGGCGTGTACCTGGACTCCAAGATCCTCGACATCGAGAACATTG
AACTGGCAATGGGCAAGGTTATGGAGCAGGGCCCGGTACTGATTATCACG
TTCCAAGCCCAGCAGATTATGTGCGTGCGGGACCAGAAGAGTCAGGTCGT
CGAGGGAGATCCGGAGAAGCCCAAGCCAAGCCCTCGCAGGATTTAAACAA
ACCGCAGACGAAGGAGCCAAGTGATCTGGGTGCAGGAGCTGGAGCAGCAC
GAGGAGTGCCGGTGGCTGCCAAAAATAAGACAGCTGTCGTGGAGGATACT
TCCGACGATTCCGACTCAGAGGCGGAATCGGAGGAGCAGCAGCGGCGGTC
ATATCCCCACCGCGACGAGGACCAACTGAACTCGGCCACCAATTTGGTTT
TGGCACAGAACTACAAGTACGATGTGGAGATCCTGGAATCCGGCGATGCC
GACCAAGACGACAGTAGCATGGATGACGTGGACGATCTGGAGGAGCGTTT
CAAGGGACGCGGTGTGATCTTCAGCACGGACACCGAAACCTTCGCCAACG
AGAACATCGAGATGAGCCCGCTGAACGTGCAGGCGGATGCGGTTAGCCAG
GGACACGTGCTGCTCGGCATCGTGGTGGTGGCACTGGCCTTGGTCTCCAT
CGGCCTGTACGCCGGCCTGGTCATATGGCGCTCGCACCTGGAGCAGCGGT
ATGGAATGCGCGAACGACTGGTCAATCACGACTTGGAGGATGAAGCGGCT
GGTGTCGACGACGTCGATTATCAGGTCTATGCGCCAACCACGACGGCAGC
TACGCCTAGGGCGTAGTCCGTTTCGAAATCTGGTCCGATTCGATTCGATC
CGATACGACGGTGGGCTTCAATTGGACCTGGTTTCGGTTTAAAGTGCACA
CTCACCACACAATTCAGACGAGACGACGACGATGGCAATTCATTGCAGCC
TCAGCTAGGATGGTGGTGGAGAGACGGTGCTCAATCGTCTAATGTATGCC
ATAAATTTCCACGACAAGCTGAAAAGCATTCCGCTTCCCAATTACACTCT
AATGGCGTTGCTAAAGGTCACGCCGATTTCTAACAGCGCAGTTGACAAGA
CCAATTAGTTAGTAAGTTTCTGTGATATTGTTCTAGAGATTCTTTTGTAC
GTCCTTGCACTAACAATACGCATAGAACCCACGTTGCTAATCGATAATAA
AAACTATATGTAAATGTAAATGAATAAAAAAAAAAAAAAAAAA

GH18370.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:22:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG11779-RC 2495 CG11779-RC 71..2495 1..2425 12125 100 Plus
CG11779.a 2479 CG11779.a 71..1439 1..1369 6845 100 Plus
CG11779.b 2551 CG11779.b 71..1439 1..1369 6845 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 14979203..14979754 1369..818 2715 99.5 Minus
chr3R 27901430 chr3R 14979819..14980362 820..277 2690 99.6 Minus
chr3R 27901430 chr3R 14972607..14973139 2425..1893 2635 99.6 Minus
chr3R 27901430 chr3R 14973212..14973615 1893..1493 1895 98.5 Minus
chr3R 27901430 chr3R 14983569..14983767 199..1 995 100 Minus
chr3R 27901430 chr3R 14975438..14975565 1495..1368 610 98.4 Minus
chr3R 27901430 chr3R 14980422..14980502 280..200 405 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:57:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19155247..19155798 1369..818 2760 100 Minus
3R 32079331 3R 19155863..19156406 820..277 2720 100 Minus
3R 32079331 3R 19148628..19149161 2426..1893 2670 100 Minus
3R 32079331 3R 19149234..19149634 1893..1493 2005 100 Minus
3R 32079331 3R 19159610..19159808 199..1 995 100 Minus
3R 32079331 3R 19151488..19151615 1495..1368 640 100 Minus
3R 32079331 3R 19156466..19156546 280..200 405 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 18896078..18896629 1369..818 2760 100 Minus
3R 31820162 3R 18896694..18897237 820..277 2720 100 Minus
3R 31820162 3R 18889459..18889992 2426..1893 2670 100 Minus
3R 31820162 3R 18890065..18890465 1893..1493 2005 100 Minus
3R 31820162 3R 18900441..18900639 199..1 995 100 Minus
3R 31820162 3R 18892319..18892446 1495..1368 640 100 Minus
3R 31820162 3R 18897297..18897377 280..200 405 100 Minus
Blast to na_te.dros performed on 2019-03-16 17:25:53 has no hits.

GH18370.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:26:43 Download gff for GH18370.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 14972607..14973139 1893..2425 99 <- Minus
chr3R 14973213..14973613 1495..1892 98 <- Minus
chr3R 14975439..14975563 1370..1494 98 <- Minus
chr3R 14979203..14979753 819..1369 99 <- Minus
chr3R 14979821..14980358 281..818 99 <- Minus
chr3R 14980422..14980502 200..280 100 <- Minus
chr3R 14983569..14983767 1..199 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:04:40 Download gff for GH18370.complete
Subject Subject Range Query Range Percent Splice Strand
CG11779-RC 1..1293 104..1396 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:06:49 Download gff for GH18370.complete
Subject Subject Range Query Range Percent Splice Strand
CG11779-RA 1..1273 104..1376 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:56:01 Download gff for GH18370.complete
Subject Subject Range Query Range Percent Splice Strand
CG11779-RA 1..1273 104..1376 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:37:35 Download gff for GH18370.complete
Subject Subject Range Query Range Percent Splice Strand
CG11779-RC 1..1293 104..1396 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:59:01 Download gff for GH18370.complete
Subject Subject Range Query Range Percent Splice Strand
CG11779-RA 1..1273 104..1376 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:04:39 Download gff for GH18370.complete
Subject Subject Range Query Range Percent Splice Strand
CG11779-RC 71..2495 1..2425 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:06:49 Download gff for GH18370.complete
Subject Subject Range Query Range Percent Splice Strand
CG11779-RA 71..1446 1..1376 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:56:01 Download gff for GH18370.complete
Subject Subject Range Query Range Percent Splice Strand
CG11779-RA 71..1446 1..1376 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:37:36 Download gff for GH18370.complete
Subject Subject Range Query Range Percent Splice Strand
CG11779-RC 71..2495 1..2425 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:59:01 Download gff for GH18370.complete
Subject Subject Range Query Range Percent Splice Strand
CG11779-RA 71..1446 1..1376 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:26:43 Download gff for GH18370.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19148629..19149161 1893..2425 100 <- Minus
3R 19149235..19149632 1495..1892 100 <- Minus
3R 19151489..19151613 1370..1494 100 <- Minus
3R 19155247..19155797 819..1369 100 <- Minus
3R 19155865..19156402 281..818 100 <- Minus
3R 19156466..19156546 200..280 100 <- Minus
3R 19159610..19159808 1..199 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:26:43 Download gff for GH18370.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19148629..19149161 1893..2425 100 <- Minus
3R 19149235..19149632 1495..1892 100 <- Minus
3R 19151489..19151613 1370..1494 100 <- Minus
3R 19155247..19155797 819..1369 100 <- Minus
3R 19155865..19156402 281..818 100 <- Minus
3R 19156466..19156546 200..280 100 <- Minus
3R 19159610..19159808 1..199 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:26:43 Download gff for GH18370.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19148629..19149161 1893..2425 100 <- Minus
3R 19149235..19149632 1495..1892 100 <- Minus
3R 19151489..19151613 1370..1494 100 <- Minus
3R 19155247..19155797 819..1369 100 <- Minus
3R 19155865..19156402 281..818 100 <- Minus
3R 19156466..19156546 200..280 100 <- Minus
3R 19159610..19159808 1..199 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:56:01 Download gff for GH18370.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14974351..14974883 1893..2425 100 <- Minus
arm_3R 14974957..14975354 1495..1892 100 <- Minus
arm_3R 14977211..14977335 1370..1494 100 <- Minus
arm_3R 14980969..14981519 819..1369 100 <- Minus
arm_3R 14981587..14982124 281..818 100 <- Minus
arm_3R 14982188..14982268 200..280 100 <- Minus
arm_3R 14985332..14985530 1..199 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:14:48 Download gff for GH18370.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18900441..18900639 1..199 100   Minus
3R 18889460..18889992 1893..2425 100 <- Minus
3R 18890066..18890463 1495..1892 100 <- Minus
3R 18892320..18892444 1370..1494 100 <- Minus
3R 18896078..18896628 819..1369 100 <- Minus
3R 18896696..18897233 281..818 100 <- Minus
3R 18897297..18897377 200..280 100 <- Minus

GH18370.hyp Sequence

Translation from 0 to 1395

> GH18370.hyp
QFEIQSVPFSKFSKDCRSIVDISKFFGRKRTFYEMKATSCRPIPFINFRI
VRYFYRPRRLNKYYDIYRIAALVRDRACLFTCQQASQNLQQQQPRFYSAP
GRRAGFFSQFFDNMKAEMDKNKEIKDNIRKFREEAQKLEESDALKSARQK
FNIVESEAQKSSSMLKEQLGAIKERVGDVLEDASKSHLAKKVTEELSKKA
RGVSDTISDTSGKLGQTSAFQAISNTTTTIKKEMDSASIENRVYRAPAKL
RKRVQLVMSDSDRVVEPNTEATGMELHKDSKFYESWENFKNNNTYVNKVL
DWKVKYDESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPS
FDQKDFLRDCETDIIPNILESIVRGDLEILKDWCFESTFNIIANPIKEAK
KAGVYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKSQVV
EGDPEKPKPSPRRI*

GH18370.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11779-PA 459 CG11779-PA 1..422 35..456 2144 100 Plus
CG11779-PE 428 CG11779-PE 1..391 66..456 1969 99.7 Plus
CG11779-PB 428 CG11779-PB 1..391 66..456 1969 99.7 Plus

GH18370.pep Sequence

Translation from 1 to 1395

> GH18370.pep
QFEIQSVPFSKFSKDCRSIVDISKFFGRKRTFYEMKATSCRPIPFINFRI
VRYFYRPRRLNKYYDIYRIAALVRDRACLFTCQQASQNLQQQQPRFYSAP
GRRAGFFSQFFDNMKAEMDKNKEIKDNIRKFREEAQKLEESDALKSARQK
FNIVESEAQKSSSMLKEQLGAIKERVGDVLEDASKSHLAKKVTEELSKKA
RGVSDTISDTSGKLGQTSAFQAISNTTTTIKKEMDSASIENRVYRAPAKL
RKRVQLVMSDSDRVVEPNTEATGMELHKDSKFYESWENFKNNNTYVNKVL
DWKVKYDESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPS
FDQKDFLRDCETDIIPNILESIVRGDLEILKDWCFESTFNIIANPIKEAK
KAGVYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKSQVV
EGDPEKPKPSPRRI*

GH18370.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18940-PA 461 GF18940-PA 4..424 36..456 1944 88.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16152-PA 459 GG16152-PA 1..422 35..456 2181 97.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18477-PA 452 GH18477-PA 2..415 43..456 1779 80 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11779-PA 459 CG11779-PA 1..422 35..456 2144 100 Plus
CG11779-PE 428 CG11779-PE 1..391 66..456 1969 99.7 Plus
CG11779-PB 428 CG11779-PB 1..391 66..456 1969 99.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24055-PA 452 GI24055-PA 5..415 46..456 1809 82.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23705-PA 458 GL23705-PA 13..421 48..456 1804 82.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11194-PB 444 GA11194-PB 5..407 53..456 1741 80.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10044-PA 458 GM10044-PA 1..421 35..456 2170 97.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20131-PA 304 GD20131-PA 1..267 190..456 1395 98.9 Plus
Dsim\GD20130-PA 141 GD20130-PA 1..139 35..173 710 96.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23681-PA 428 GJ23681-PA 1..391 66..456 1740 82.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13236-PA 457 GK13236-PA 1..420 35..456 1838 81.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25149-PA 459 GE25149-PA 1..422 35..456 2183 97.2 Plus