Clone GH18514 Report

Search the DGRC for GH18514

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:185
Well:14
Vector:pOT2
Associated Gene/TranscriptSpn47C-RA
Protein status:GH18514.pep: gold
Preliminary Size:1449
Sequenced Size:1334

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7722 2001-01-01 Release 2 assignment
CG7722 2001-07-04 Blastp of sequenced clone
CG7722 2003-01-01 Sim4 clustering to Release 3
CG7722 2008-04-29 Release 5.5 accounting
CG7722 2008-08-15 Release 5.9 accounting
CG7722 2008-12-18 5.12 accounting

Clone Sequence Records

GH18514.complete Sequence

1334 bp (1334 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051530

> GH18514.complete
CCAAGCGAATGGGTATTTCTGATCATCTGTCTGATCCCAATGGCCTCCGG
GGGCACTACGGCACCATCGCTGAGTGCCAGTCCCATAGTCTTCGCCCGGA
ATCTGTTCCGGGCCCTGAACGATGAAGTTCCGCCCGTGAATATGATGGTA
TCTCCGGCTGGTGCCCGCAGTGCCATGACCTTGGTGTTTATGGGGGCCGG
CGGGAAGAGTGCAGATGAACTGCGCTCCAAATTGATATTGGGTGTATCAA
ATAAATCGGAAGTGGCCAAACAACATGCGGAATCCTGGACCGATGAGTGC
TCCTGTGCAAAAAAAGGAGTTGCGCTGCGATTGGTCACACGATTGTACGT
CAATGAAGAGGAGAAAATCCGGACTGACTTTAATGACATGGCCTTGGAGT
TCTTCAATGCTGAGGCTTATTCTCTTAACTACTTGAACCCGGAAGATTCT
GTCAAAAAAGTTAACAAGTGGCTAGAAAAACACACGTTTTACACTGTACG
AAATCTGTTTACGCCCGAGGTTTTCAATTCCGATTCCAGTGTAATCCTTG
TAAACTCACTGTTCTTCCGAGCCAAATGGAACAAGATATTCCCCCAGCAA
CTTACCCAGATCGATGACTTCTGGATAAATCCTCGGCAGCGAATGGAAGT
TTCAATGATGAGGCAAATTGGTCAGTTCCGCTATGGGGAGTCCAAGAAAC
TAAAGTCACAGATCCTGCAATTGCCGTTTGAAAGATCCAATTTGACCATG
ATGATTATCTTACCAACTGCTATTGATGGCTTGCCCGAATTGGAGGAAAA
ACTTGGTCAACTGGACATGAACGAGGTAGCCGCCAAAAGTCTAATGAAGG
AAGTGGATGTAACCATTCCAAAATTCAGGATCGAGTGCACTGTTGATCTT
AAGGTTCCACTACAAAAGATGGGTATTAATAGTGTTTTTGATGCTGGACA
AGCGGATTTGAGCGATCTTTTCGAAATGAAAACACCACAAAAGATTTCGG
AGGCTAGACACAAAGTGTTTTTAAATGTTACTGAATTTGGGTGCGAAGTA
GCACCAGAAGCAGAGGTCCAACCCGAAGTCCTTAAGAAGAATCCCGATCG
CAAGTTCTTCAAGGCCGACCGCCCCTTTGTTTTTGCCATACGCGACAGGA
AAAACGTTTACTTCGTTGGCCATTTCGTTAAGCCCTAATTGCATGTATTT
TAATGATGATGGCCCACAGGCAATCACGCCAAAATGGGCAGTATCCCAAT
GAACTTGAAATTATTGCCAAACAAATGTACACAAAGAATTCGAAATACAA
CAGTAGAGAACGCTAAAAAAAAAAAAAAAAAAAA

GH18514.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7722-RB 1558 CG7722-RB 185..1499 1..1315 6575 100 Plus
CG7722.a 1558 CG7722.a 185..1499 1..1315 6575 100 Plus
CG7722-RA 1357 CG7722-RA 44..1346 13..1315 6515 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 6828298..6829203 918..13 4410 99.1 Minus
chr2R 21145070 chr2R 6827776..6828029 1314..1061 1255 99.6 Minus
chr2R 21145070 chr2R 6828095..6828242 1063..916 725 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:58:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10940710..10941615 918..13 4530 100 Minus
2R 25286936 2R 10940187..10940441 1315..1061 1275 100 Minus
2R 25286936 2R 10940507..10940654 1063..916 740 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 10941909..10942814 918..13 4530 100 Minus
2R 25260384 2R 10941386..10941640 1315..1061 1275 100 Minus
2R 25260384 2R 10941706..10941853 1063..916 740 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:38:24 has no hits.

GH18514.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:39:16 Download gff for GH18514.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 6827792..6828026 1064..1298 99 <- Minus
chr2R 6828095..6828239 919..1063 99 <- Minus
chr2R 6828298..6829202 14..918 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:48:06 Download gff for GH18514.complete
Subject Subject Range Query Range Percent Splice Strand
CG7722-RA 1..1149 40..1188 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:25:38 Download gff for GH18514.complete
Subject Subject Range Query Range Percent Splice Strand
Spn47C-RB 1..1149 40..1188 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:53:11 Download gff for GH18514.complete
Subject Subject Range Query Range Percent Splice Strand
Spn47C-RA 1..1149 40..1188 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:58:38 Download gff for GH18514.complete
Subject Subject Range Query Range Percent Splice Strand
CG7722-RA 1..1149 40..1188 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:22:47 Download gff for GH18514.complete
Subject Subject Range Query Range Percent Splice Strand
Spn47C-RA 1..1149 40..1188 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:24:15 Download gff for GH18514.complete
Subject Subject Range Query Range Percent Splice Strand
CG7722-RA 52..1353 13..1314 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:25:38 Download gff for GH18514.complete
Subject Subject Range Query Range Percent Splice Strand
Spn47C-RB 1..1314 1..1314 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:53:11 Download gff for GH18514.complete
Subject Subject Range Query Range Percent Splice Strand
Spn47C-RB 38..1351 1..1314 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:58:39 Download gff for GH18514.complete
Subject Subject Range Query Range Percent Splice Strand
CG7722-RA 52..1353 13..1314 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:22:47 Download gff for GH18514.complete
Subject Subject Range Query Range Percent Splice Strand
Spn47C-RB 38..1351 1..1314 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:39:16 Download gff for GH18514.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10940188..10940438 1064..1314 100 <- Minus
2R 10940507..10940651 919..1063 100 <- Minus
2R 10940710..10941614 14..918 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:39:16 Download gff for GH18514.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10940188..10940438 1064..1314 100 <- Minus
2R 10940507..10940651 919..1063 100 <- Minus
2R 10940710..10941614 14..918 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:39:16 Download gff for GH18514.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10940188..10940438 1064..1314 100 <- Minus
2R 10940507..10940651 919..1063 100 <- Minus
2R 10940710..10941614 14..918 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:53:11 Download gff for GH18514.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6828012..6828156 919..1063 100 <- Minus
arm_2R 6827693..6827943 1064..1314 100 <- Minus
arm_2R 6828215..6829119 14..918 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:36:28 Download gff for GH18514.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10941387..10941637 1064..1314 100 <- Minus
2R 10941706..10941850 919..1063 100 <- Minus
2R 10941909..10942813 14..918 100 <- Minus

GH18514.hyp Sequence

Translation from 0 to 1187

> GH18514.hyp
PSEWVFLIICLIPMASGGTTAPSLSASPIVFARNLFRALNDEVPPVNMMV
SPAGARSAMTLVFMGAGGKSADELRSKLILGVSNKSEVAKQHAESWTDEC
SCAKKGVALRLVTRLYVNEEEKIRTDFNDMALEFFNAEAYSLNYLNPEDS
VKKVNKWLEKHTFYTVRNLFTPEVFNSDSSVILVNSLFFRAKWNKIFPQQ
LTQIDDFWINPRQRMEVSMMRQIGQFRYGESKKLKSQILQLPFERSNLTM
MIILPTAIDGLPELEEKLGQLDMNEVAAKSLMKEVDVTIPKFRIECTVDL
KVPLQKMGINSVFDAGQADLSDLFEMKTPQKISEARHKVFLNVTEFGCEV
APEAEVQPEVLKKNPDRKFFKADRPFVFAIRDRKNVYFVGHFVKP*

GH18514.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
Spn47C-PC 382 CG7722-PC 1..382 14..395 1959 100 Plus
Spn47C-PB 382 CG7722-PB 1..382 14..395 1959 100 Plus
Spn47C-PA 382 CG7722-PA 1..382 14..395 1959 100 Plus
Spn42Dc-PB 403 CG9455-PB 11..380 31..395 702 37.2 Plus
Spn42Dc-PA 403 CG9455-PA 11..380 31..395 702 37.2 Plus

GH18514.pep Sequence

Translation from 39 to 1187

> GH18514.pep
MASGGTTAPSLSASPIVFARNLFRALNDEVPPVNMMVSPAGARSAMTLVF
MGAGGKSADELRSKLILGVSNKSEVAKQHAESWTDECSCAKKGVALRLVT
RLYVNEEEKIRTDFNDMALEFFNAEAYSLNYLNPEDSVKKVNKWLEKHTF
YTVRNLFTPEVFNSDSSVILVNSLFFRAKWNKIFPQQLTQIDDFWINPRQ
RMEVSMMRQIGQFRYGESKKLKSQILQLPFERSNLTMMIILPTAIDGLPE
LEEKLGQLDMNEVAAKSLMKEVDVTIPKFRIECTVDLKVPLQKMGINSVF
DAGQADLSDLFEMKTPQKISEARHKVFLNVTEFGCEVAPEAEVQPEVLKK
NPDRKFFKADRPFVFAIRDRKNVYFVGHFVKP*

GH18514.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12444-PA 382 GF12444-PA 1..382 1..382 1386 68.4 Plus
Dana\GF13145-PA 438 GF13145-PA 32..377 34..380 664 37.8 Plus
Dana\GF12698-PA 390 GF12698-PA 29..389 17..381 516 32.6 Plus
Dana\GF13146-PA 360 GF13146-PA 8..359 22..382 489 32.7 Plus
Dana\GF11691-PA 374 GF11691-PA 15..372 18..381 486 30.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22703-PA 395 GG22703-PA 14..395 1..382 1832 89 Plus
Dere\GG23229-PA 401 GG23229-PA 11..380 18..382 698 36.7 Plus
Dere\GG23231-PA 404 GG23231-PA 35..400 18..378 549 32.9 Plus
Dere\GG23230-PA 372 GG23230-PA 18..372 19..382 533 32.9 Plus
Dere\GG23260-PA 390 GG23260-PA 29..389 17..381 512 31.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23432-PA 384 GH23432-PA 1..384 1..382 1190 57.8 Plus
Dgri\GH20566-PA 384 GH20566-PA 1..384 1..382 1176 57.6 Plus
Dgri\GH22013-PA 401 GH22013-PA 11..379 18..382 673 35.8 Plus
Dgri\GH23435-PA 214 GH23435-PA 1..212 1..210 634 57.1 Plus
Dgri\GH21519-PA 384 GH21519-PA 12..383 10..381 505 32.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
Spn47C-PC 382 CG7722-PC 1..382 1..382 1959 100 Plus
Spn47C-PB 382 CG7722-PB 1..382 1..382 1959 100 Plus
Spn47C-PA 382 CG7722-PA 1..382 1..382 1959 100 Plus
Spn42Dc-PB 403 CG9455-PB 11..380 18..382 702 37.2 Plus
Spn42Dc-PA 403 CG9455-PA 11..380 18..382 702 37.2 Plus
Spn42De-PB 386 CG9460-PB 17..382 18..378 561 33.8 Plus
Spn42De-PA 404 CG9460-PA 35..400 18..378 561 33.8 Plus
Spn42Dd-PB 372 CG9456-PB 18..372 19..382 534 33.5 Plus
Spn43Aa-PA 390 CG12172-PA 29..389 17..381 499 31.1 Plus
Spn28B-PB 378 CG6717-PB 17..376 18..382 483 33.2 Plus
Spn28B-PA 378 CG6717-PA 17..376 18..382 483 33.2 Plus
Spn38F-PB 370 CG9334-PB 17..368 18..382 479 32.3 Plus
Spn38F-PA 372 CG9334-PA 17..370 18..382 476 32.3 Plus
Spn28F-PA 375 CG8137-PA 17..373 18..382 472 31.7 Plus
Spn55B-PA 374 CG10913-PA 15..372 18..381 448 28.6 Plus
Spn42Da-PJ 374 CG9453-PJ 15..373 17..380 440 27.7 Plus
Spn42Da-PI 406 CG9453-PI 47..405 17..380 440 27.7 Plus
Spn42Da-PG 379 CG9453-PG 15..377 17..381 437 26.9 Plus
Spn42Da-PD 411 CG9453-PD 47..409 17..381 437 26.9 Plus
Spn42Da-PA 392 CG9453-PA 15..369 17..373 432 27.2 Plus
Spn42Da-PB 424 CG9453-PB 47..401 17..373 432 27.2 Plus
Spn42Da-PL 379 CG9453-PL 15..378 17..381 426 26.8 Plus
Spn42Da-PK 379 CG9453-PK 15..378 17..381 426 26.8 Plus
Spn42Da-PH 379 CG9453-PH 15..378 17..381 426 26.8 Plus
Spn42Da-PF 411 CG9453-PF 47..410 17..381 426 26.8 Plus
Spn42Da-PE 411 CG9453-PE 47..410 17..381 426 26.8 Plus
Spn28Da-PB 384 CG31902-PB 17..372 18..382 408 30.3 Plus
Spn43Ab-PB 393 CG1865-PB 20..386 6..378 402 27.4 Plus
Spn28Db-PB 377 CG33121-PB 23..370 18..381 385 29.7 Plus
nec-PA 476 CG1857-PA 110..471 18..382 371 27.4 Plus
Spn42Db-PC 388 CG9454-PC 28..374 33..380 364 27.9 Plus
Spn31A-PA 382 CG4804-PA 30..381 34..381 325 27.1 Plus
Spn53F-PB 379 CG10956-PB 26..375 22..378 321 25.7 Plus
Spn88Eb-PA 426 CG6687-PA 41..421 18..382 320 24.6 Plus
Spn88Ea-PB 427 CG18525-PB 43..422 18..382 304 23.8 Plus
Spn88Ea-PA 427 CG18525-PA 43..422 18..382 304 23.8 Plus
Spn27A-PB 447 CG11331-PB 64..443 6..382 289 25.8 Plus
Spn27A-PA 447 CG11331-PA 64..443 6..382 289 25.8 Plus
Spn43Ad-PA 407 CG1859-PA 33..405 12..380 265 24.3 Plus
Spn42Db-PD 286 CG9454-PD 28..278 33..287 239 25.7 Plus
Spn28Dc-PA 536 CG7219-PA 132..532 38..382 221 21.9 Plus
Spn77Ba-PC 450 CG6680-PC 71..447 10..382 219 23.5 Plus
Spn77Ba-PB 450 CG6680-PB 71..447 10..382 219 23.5 Plus
Spn77Ba-PA 450 CG6680-PA 71..447 10..382 219 23.5 Plus
Spn100A-PA 649 CG1342-PA 387..616 155..369 215 27.7 Plus
Spn77Bb-PA 362 CG6663-PA 115..347 141..372 177 23.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:44:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19760-PA 384 GI19760-PA 1..384 1..382 1032 51.8 Plus
Dmoj\GI19718-PA 395 GI19718-PA 11..378 18..382 584 34.7 Plus
Dmoj\GI19487-PA 384 GI19487-PA 23..383 17..381 503 32.7 Plus
Dmoj\GI19420-PA 376 GI19420-PA 15..371 18..380 462 29.2 Plus
Dmoj\GI20049-PA 503 GI20049-PA 114..496 2..382 462 29.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20647-PA 382 GL20647-PA 1..382 1..382 1331 62.3 Plus
Dper\GL11125-PA 404 GL11125-PA 11..380 18..382 707 37.7 Plus
Dper\GL11126-PA 421 GL11126-PA 46..421 10..382 554 31.8 Plus
Dper\GL13961-PA 417 GL13961-PA 54..417 18..382 543 31.1 Plus
Dper\GL13962-PA 395 GL13962-PA 28..393 18..382 532 31.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20544-PA 382 GA20544-PA 1..382 1..382 1332 62.3 Plus
Dpse\GA22215-PA 382 GA22215-PA 1..382 1..382 1329 62 Plus
Dpse\GA21800-PA 404 GA21800-PA 11..380 18..382 701 37.2 Plus
Dpse\GA24618-PA 407 GA24618-PA 33..407 10..382 552 32.2 Plus
Dpse\GA26905-PA 417 GA26905-PA 54..417 18..382 532 30.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:44:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20478-PA 382 GM20478-PA 1..382 1..382 1966 95.8 Plus
Dsec\GM20903-PA 403 GM20903-PA 11..380 18..382 717 37.2 Plus
Dsec\GM11939-PA 341 GM11939-PA 11..336 18..338 638 37 Plus
Dsec\GM20904-PA 372 GM20904-PA 18..372 19..382 550 34 Plus
Dsec\GM20933-PA 390 GM20933-PA 15..389 7..381 504 31.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25947-PA 396 GD25947-PA 15..396 1..382 1958 96.1 Plus
Dsim\GD10430-PA 403 GD10430-PA 11..380 18..382 726 37.7 Plus
Dsim\GD10433-PA 598 GD10433-PA 245..594 34..378 568 34.4 Plus
Dsim\GD10459-PA 390 GD10459-PA 29..389 17..381 505 31.5 Plus
Dsim\GD23476-PA 397 GD23476-PA 36..395 18..382 472 32.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18186-PA 384 GJ18186-PA 1..384 1..382 1192 57.8 Plus
Dvir\GJ17545-PA 407 GJ17545-PA 29..379 30..382 648 35.1 Plus
Dvir\GJ15151-PA 387 GJ15151-PA 26..386 17..381 500 31.8 Plus
Dvir\GJ22484-PA 376 GJ22484-PA 15..371 18..380 473 29.4 Plus
Dvir\GJ14940-PA 397 GJ14940-PA 35..390 17..378 438 28.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20662-PA 383 GK20662-PA 1..383 1..382 1290 62.1 Plus
Dwil\GK20885-PA 422 GK20885-PA 13..382 18..382 738 39.6 Plus
Dwil\GK20886-PA 391 GK20886-PA 20..386 18..378 549 31.8 Plus
Dwil\GK21791-PA 365 GK21791-PA 4..364 17..381 516 32.3 Plus
Dwil\GK20759-PA 401 GK20759-PA 38..397 17..382 474 31.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13059-PA 396 GE13059-PA 15..396 1..382 1864 90.6 Plus
Dyak\GE19080-PA 401 GE19080-PA 30..380 31..382 703 38.4 Plus
Dyak\GE19082-PA 386 GE19082-PA 17..382 18..378 558 32.6 Plus
Dyak\GE11098-PA 375 GE11098-PA 17..374 18..382 525 33.7 Plus
Dyak\GE19081-PA 374 GE19081-PA 18..374 19..382 523 32.8 Plus