BDGP Sequence Production Resources |
Search the DGRC for GH18546
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 185 |
Well: | 46 |
Vector: | pOT2 |
Associated Gene/Transcript | CG5955-RA |
Protein status: | GH18546.pep: gold |
Preliminary Size: | 1470 |
Sequenced Size: | 1308 |
Gene | Date | Evidence |
---|---|---|
CG5955 | 2001-01-01 | Release 2 assignment |
CG5955 | 2001-09-19 | Blastp of sequenced clone |
CG5955 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5955 | 2008-04-29 | Release 5.5 accounting |
CG5955 | 2008-08-15 | Release 5.9 accounting |
CG5955 | 2008-12-18 | 5.12 accounting |
1308 bp (1308 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058410
> GH18546.complete CTGGCAGCGCTCGTCGCGAATCGAAAAAGTCCAGTTCGCAAAATGTTTCG CAAATGCCTCGCCAGCCTGGCTTTGGCCCCAGTTGCCAGTCCCATTCCGC TGCCCAGGATCACCCCGATCGCCAGCCAGCTTGTCCAGCGTCGCGCGTTC CACCAGGTTCCTCGCGAGAGTAGGCCACCCAAAATTCTGATCACAGGTGG CTTGGGCCAGTTGGGCATCGAGTGCGCCAAACTCCTGCGGACGCAGTATG GCAGCCAAAACGTGATCCTCTCGGACATTATAAAGCCCAGTCAGTCGGTA CTGGAGAATGGTCCCTACATTTTTGCCGACATCCTGGACTTCAAGGGTCT CCAGAAGATCGTTGTGGACCATCGCATTGACTGGCTGATCCATTTCTCGG CCCTGCTGAGTGCGGTGGGAGAGCAAAATGTTCCACTGGCTGTGAGGGTC AACATCGAGGGTGTCCACAACGTCATCGAGCTGGCGAAGCAGTATAAGCT CCGCATCTTCGTACCAAGCACAATCGGAGCCTTCGGTCCCGACAGTCCTC GCAATCCCACGCCGAATGTTACGATCCAACGGCCGCGCACCATTTACGGC GTTTCCAAGGTGCACGCCGAGCTGATTGGCGAATACTACTACCACAAGTT TGGACTGGACTTCAGATGCCTGCGCTTCCCAGGAGTGATTTCCAGTGATC CGCCGGGCGGCGGCACCACAGATTACGCTGTGGCCGTGTTCCATGAAGCG CTGCGCAATGGAAAGTACACCTGCTACCTGCGTCCTGACACAAGACTGCC CATGATGTACATTGAAGATTGTTTGCGGGCTCTCCTCGAGTTCATGCGTG CTCCCAACGAACAGCTGAAGCGCCGCGTCTACAACGTGACCGCCATGTCC TTCACTCCCGAGGAGCTGTTCGCCCAGCTGGGCAAGCACGTGCCCAATCT GCACGTGACCTACAAGCCAGATAGCCGCCAGTTGATCGCAGACGCCTGGC CGCAGGTATTCGATGACTCCGATGCGCGGCGCGACTGGCACTGGCAGCAC AAGTACGACCTGTCCAACCTGGTGGACTTCATGATCAAGGACGTGCAGGA TAACTACATTAATGTTCAGCCGGAGCAGCAGACTCTGCAGATCTAAGACG TGGATCGAACAACCGCATCTAGTATTGCTAAGTAATGAAATCCAATCGCA TTTAACACTGCATTTATCTAGTGAATAGCAACACAAACCACTGTAACATT TTACCTTTTAAAATACAGTAAGGCATTTATTGGAAAGGAAAAAAAAAAAA AAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 20458140..20458601 | 827..1288 | 2295 | 99.8 | Plus |
chr3L | 24539361 | chr3L | 20456725..20456978 | 194..447 | 1255 | 99.6 | Plus |
chr3L | 24539361 | chr3L | 20455978..20456175 | 1..198 | 990 | 100 | Plus |
chr3L | 24539361 | chr3L | 20457321..20457469 | 573..721 | 745 | 100 | Plus |
chr3L | 24539361 | chr3L | 20457134..20457262 | 445..573 | 645 | 100 | Plus |
chr3L | 24539361 | chr3L | 20457973..20458081 | 720..828 | 530 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 20469131..20469596 | 827..1292 | 2330 | 100 | Plus |
3L | 28110227 | 3L | 20467716..20467969 | 194..447 | 1270 | 100 | Plus |
3L | 28110227 | 3L | 20466970..20467167 | 1..198 | 990 | 100 | Plus |
3L | 28110227 | 3L | 20468312..20468460 | 573..721 | 745 | 100 | Plus |
3L | 28110227 | 3L | 20468125..20468253 | 445..573 | 645 | 100 | Plus |
3L | 28110227 | 3L | 20468964..20469072 | 720..828 | 545 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 20462231..20462696 | 827..1292 | 2330 | 100 | Plus |
3L | 28103327 | 3L | 20460816..20461069 | 194..447 | 1270 | 100 | Plus |
3L | 28103327 | 3L | 20460070..20460267 | 1..198 | 990 | 100 | Plus |
3L | 28103327 | 3L | 20461412..20461560 | 573..721 | 745 | 100 | Plus |
3L | 28103327 | 3L | 20461225..20461353 | 445..573 | 645 | 100 | Plus |
3L | 28103327 | 3L | 20462064..20462172 | 720..828 | 545 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 20455978..20456173 | 1..196 | 100 | -> | Plus |
chr3L | 20456728..20456977 | 197..446 | 99 | -> | Plus |
chr3L | 20457136..20457262 | 447..573 | 100 | -> | Plus |
chr3L | 20457322..20457469 | 574..721 | 100 | -> | Plus |
chr3L | 20457975..20458080 | 722..827 | 99 | -> | Plus |
chr3L | 20458141..20458601 | 828..1288 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5955-RA | 1..1104 | 43..1146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5955-RA | 1..1104 | 43..1146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5955-RA | 1..1104 | 43..1146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5955-RA | 1..1104 | 43..1146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5955-RA | 1..1104 | 43..1146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5955-RA | 23..1310 | 1..1288 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5955-RA | 23..1310 | 1..1288 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5955-RA | 27..1314 | 1..1288 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5955-RA | 23..1310 | 1..1288 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5955-RA | 27..1314 | 1..1288 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20466970..20467165 | 1..196 | 100 | -> | Plus |
3L | 20467719..20467968 | 197..446 | 100 | -> | Plus |
3L | 20468127..20468253 | 447..573 | 100 | -> | Plus |
3L | 20468313..20468460 | 574..721 | 100 | -> | Plus |
3L | 20468966..20469071 | 722..827 | 100 | -> | Plus |
3L | 20469132..20469592 | 828..1288 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20466970..20467165 | 1..196 | 100 | -> | Plus |
3L | 20467719..20467968 | 197..446 | 100 | -> | Plus |
3L | 20468127..20468253 | 447..573 | 100 | -> | Plus |
3L | 20468313..20468460 | 574..721 | 100 | -> | Plus |
3L | 20468966..20469071 | 722..827 | 100 | -> | Plus |
3L | 20469132..20469592 | 828..1288 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20466970..20467165 | 1..196 | 100 | -> | Plus |
3L | 20467719..20467968 | 197..446 | 100 | -> | Plus |
3L | 20468127..20468253 | 447..573 | 100 | -> | Plus |
3L | 20468313..20468460 | 574..721 | 100 | -> | Plus |
3L | 20468966..20469071 | 722..827 | 100 | -> | Plus |
3L | 20469132..20469592 | 828..1288 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 20460070..20460265 | 1..196 | 100 | -> | Plus |
arm_3L | 20460819..20461068 | 197..446 | 100 | -> | Plus |
arm_3L | 20461227..20461353 | 447..573 | 100 | -> | Plus |
arm_3L | 20461413..20461560 | 574..721 | 100 | -> | Plus |
arm_3L | 20462066..20462171 | 722..827 | 100 | -> | Plus |
arm_3L | 20462232..20462692 | 828..1288 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20460070..20460265 | 1..196 | 100 | -> | Plus |
3L | 20460819..20461068 | 197..446 | 100 | -> | Plus |
3L | 20461227..20461353 | 447..573 | 100 | -> | Plus |
3L | 20461413..20461560 | 574..721 | 100 | -> | Plus |
3L | 20462066..20462171 | 722..827 | 100 | -> | Plus |
3L | 20462232..20462692 | 828..1288 | 100 | Plus |
Translation from 0 to 1145
> GH18546.hyp LAALVANRKSPVRKMFRKCLASLALAPVASPIPLPRITPIASQLVQRRAF HQVPRESRPPKILITGGLGQLGIECAKLLRTQYGSQNVILSDIIKPSQSV LENGPYIFADILDFKGLQKIVVDHRIDWLIHFSALLSAVGEQNVPLAVRV NIEGVHNVIELAKQYKLRIFVPSTIGAFGPDSPRNPTPNVTIQRPRTIYG VSKVHAELIGEYYYHKFGLDFRCLRFPGVISSDPPGGGTTDYAVAVFHEA LRNGKYTCYLRPDTRLPMMYIEDCLRALLEFMRAPNEQLKRRVYNVTAMS FTPEELFAQLGKHVPNLHVTYKPDSRQLIADAWPQVFDDSDARRDWHWQH KYDLSNLVDFMIKDVQDNYINVQPEQQTLQI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5955-PA | 367 | CG5955-PA | 1..367 | 15..381 | 1934 | 100 | Plus |
Translation from 42 to 1145
> GH18546.pep MFRKCLASLALAPVASPIPLPRITPIASQLVQRRAFHQVPRESRPPKILI TGGLGQLGIECAKLLRTQYGSQNVILSDIIKPSQSVLENGPYIFADILDF KGLQKIVVDHRIDWLIHFSALLSAVGEQNVPLAVRVNIEGVHNVIELAKQ YKLRIFVPSTIGAFGPDSPRNPTPNVTIQRPRTIYGVSKVHAELIGEYYY HKFGLDFRCLRFPGVISSDPPGGGTTDYAVAVFHEALRNGKYTCYLRPDT RLPMMYIEDCLRALLEFMRAPNEQLKRRVYNVTAMSFTPEELFAQLGKHV PNLHVTYKPDSRQLIADAWPQVFDDSDARRDWHWQHKYDLSNLVDFMIKD VQDNYINVQPEQQTLQI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10346-PA | 371 | GF10346-PA | 1..370 | 1..367 | 1727 | 87.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16117-PA | 367 | GG16117-PA | 1..367 | 1..367 | 1919 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14551-PA | 350 | GH14551-PA | 1..344 | 1..357 | 1633 | 85.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5955-PA | 367 | CG5955-PA | 1..367 | 1..367 | 1934 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13398-PA | 355 | GI13398-PA | 1..355 | 1..367 | 1660 | 86.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12790-PA | 365 | GL12790-PA | 1..363 | 1..367 | 1726 | 87.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19257-PA | 365 | GA19257-PA | 1..363 | 1..367 | 1738 | 88.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22296-PA | 367 | GM22296-PA | 1..367 | 1..367 | 1943 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14889-PA | 367 | GD14889-PA | 1..367 | 1..367 | 1949 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11523-PA | 359 | GJ11523-PA | 1..359 | 1..367 | 1661 | 85.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12293-PA | 370 | GK12293-PA | 1..370 | 1..367 | 1728 | 87.6 | Plus |