Clone GH18603 Report

Search the DGRC for GH18603

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:186
Well:3
Vector:pOT2
Associated Gene/TranscriptUfd1-like-RA
Protein status:GH18603.pep: gold
Preliminary Size:1317
Sequenced Size:1204

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6233 2001-01-01 Release 2 assignment
CG6233 2001-10-10 Blastp of sequenced clone
CG6233 2003-01-01 Sim4 clustering to Release 3
Ufd1-like 2008-04-29 Release 5.5 accounting
Ufd1-like 2008-08-15 Release 5.9 accounting
Ufd1-like 2008-12-18 5.12 accounting

Clone Sequence Records

GH18603.complete Sequence

1204 bp (1204 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060735

> GH18603.complete
TGGTCACACTGCCCCCGCCGTGACAAACAAAATAGAAAAAAAAAATAAAA
CAAAAGATAAAATTTTAGCCTCCCCCCTTTGAGAAATAAAGGGTCATTTG
AGGCAGTTTAAATCGAAAAGAATCCATAGGCACGGAGAGCCCAGCACACA
TAGAATGTTCCACTTCAGCGGCTTCAACATGATGTTCCCGGAGGGACGCA
ATTTTCATGCCAACTACAAGTGCTTCTCCGTATCCATGTTGCCAGGAAAC
GAGCGAACCGACGTGGAAAAGGGCGGAAAGATTATTATGCCTCCCTCGGC
GCTGGACACGCTCACCCGCCTGAATGTCGAGTATCCAATGCTGTTCAAGC
TGACCAACGTCAAGAAATCGCGATCCTCGCATGCCGGCGTACTCGAGTTT
GTGGCCGACGAGGGCAAATGCTATCTACCCCACTGGATGATGGAAAACCT
GCTGTTGGGTGAGGGCGACATACTCAACATCGAGAGTGTCTCGCTGCCGG
TGGCCACCTTCTCAAAGTTTCAACCGCACAGCACCGACTTCCTGGACATC
ACCAATCCCAAGGCGGTGCTGGAGAATGCATTGCGCAACTTTGCCTGCCT
CACCAGGGGCGATGTCATAGCCATTAAGTACAACAAGAAGGTCTACGAAC
TGTGTGTCCTGGAGACAAAGCCCGGCAATGCAGTCAGCATCATTGAGTGC
GACATGAATGTGGAATTTGAGGCGCCAGTCGGCTACAAGGATCACTCCGA
AACGCAGGCATCGGGCTCTGGGCAGCAGGGTGCTGCTGGAACTGTTGGCG
GCGAAATCGCTGGAGCCACCAACGCCATACTCGAAGAGGTCGTGGAGACC
TTCAAGGGTTCCGGCGTACGTCTCGATGGTAAGAAGAAGAAGGAAAGCCA
GTTGGAAACGCCGGTCGTTAAGAAGGTGCTAGCCCGCGGCGTTCCAGACT
ATGATTTCCAGTTTGGACTCATCCGTTTCGATCGCAACATTCGGCCTATC
AGTGATAGAAGCCAAGAAGATGATGCCGTAGCTGGCAATGCGGACGCTTC
CGATGCGGAGAGCTTCCACGGCACCGGTTTCTCGATGAAGAAAACGCGCA
AATAGCTCTGTATCTCTAGTTCTAGTTATATATTGTGTGACACATAGAAA
TTAAAGGAAAAACCTCACAGGGGCAGCGTCAAAAAAAAAAAAAAAAAAAA
AAAA

GH18603.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:12:20
Subject Length Description Subject Range Query Range Score Percent Strand
Ufd1-like-RA 1332 Ufd1-like-RA 152..1332 1..1182 5870 99.9 Plus
mRpL2-RA 1102 mRpL2-RA 990..1102 1182..1070 565 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11112844..11113742 1180..282 4435 99.6 Minus
chr3L 24539361 chr3L 11113800..11114078 281..1 1280 97.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:58:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11121964..11122864 1182..282 4505 100 Minus
3L 28110227 3L 11122922..11123201 281..1 1355 99.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11115064..11115964 1182..282 4505 100 Minus
3L 28103327 3L 11116022..11116301 281..1 1365 99.6 Minus
Blast to na_te.dros performed on 2019-03-15 21:47:22 has no hits.

GH18603.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:48:30 Download gff for GH18603.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11112844..11113742 282..1180 99 <- Minus
chr3L 11113800..11114078 1..281 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:48:13 Download gff for GH18603.complete
Subject Subject Range Query Range Percent Splice Strand
Ufd1-like-RA 1..951 155..1105 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:51:42 Download gff for GH18603.complete
Subject Subject Range Query Range Percent Splice Strand
Ufd1-like-RA 1..951 155..1105 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:57:46 Download gff for GH18603.complete
Subject Subject Range Query Range Percent Splice Strand
Ufd1-like-RA 1..951 155..1105 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:20:58 Download gff for GH18603.complete
Subject Subject Range Query Range Percent Splice Strand
Ufd1-like-RA 1..951 155..1105 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:02:29 Download gff for GH18603.complete
Subject Subject Range Query Range Percent Splice Strand
Ufd1-like-RA 1..951 155..1105 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:36:41 Download gff for GH18603.complete
Subject Subject Range Query Range Percent Splice Strand
Ufd1-like-RA 1..1179 1..1180 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:51:41 Download gff for GH18603.complete
Subject Subject Range Query Range Percent Splice Strand
Ufd1-like-RA 1..1179 1..1180 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:57:46 Download gff for GH18603.complete
Subject Subject Range Query Range Percent Splice Strand
Ufd1-like-RA 16..1194 1..1180 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:20:59 Download gff for GH18603.complete
Subject Subject Range Query Range Percent Splice Strand
Ufd1-like-RA 1..1179 1..1180 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:29 Download gff for GH18603.complete
Subject Subject Range Query Range Percent Splice Strand
Ufd1-like-RA 16..1194 1..1180 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:48:30 Download gff for GH18603.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11121966..11122864 282..1180 100 <- Minus
3L 11122922..11123201 1..281 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:48:30 Download gff for GH18603.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11121966..11122864 282..1180 100 <- Minus
3L 11122922..11123201 1..281 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:48:30 Download gff for GH18603.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11121966..11122864 282..1180 100 <- Minus
3L 11122922..11123201 1..281 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:57:46 Download gff for GH18603.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11115066..11115964 282..1180 100 <- Minus
arm_3L 11116022..11116301 1..281 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:57:32 Download gff for GH18603.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11115066..11115964 282..1180 100 <- Minus
3L 11116022..11116301 1..281 99   Minus

GH18603.pep Sequence

Translation from 154 to 1104

> GH18603.pep
MFHFSGFNMMFPEGRNFHANYKCFSVSMLPGNERTDVEKGGKIIMPPSAL
DTLTRLNVEYPMLFKLTNVKKSRSSHAGVLEFVADEGKCYLPHWMMENLL
LGEGDILNIESVSLPVATFSKFQPHSTDFLDITNPKAVLENALRNFACLT
RGDVIAIKYNKKVYELCVLETKPGNAVSIIECDMNVEFEAPVGYKDHSET
QASGSGQQGAAGTVGGEIAGATNAILEEVVETFKGSGVRLDGKKKKESQL
ETPVVKKVLARGVPDYDFQFGLIRFDRNIRPISDRSQEDDAVAGNADASD
AESFHGTGFSMKKTRK*

GH18603.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24568-PA 317 GF24568-PA 1..317 1..316 1408 88 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13934-PA 314 GG13934-PA 1..314 1..316 1557 92.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14636-PA 334 GH14636-PA 1..334 1..316 1340 79.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
Ufd1-like-PA 316 CG6233-PA 1..316 1..316 1643 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11622-PA 314 GI11622-PA 1..314 1..316 1384 83.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19461-PA 313 GA19461-PA 1..313 1..316 1404 84.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24769-PA 316 GM24769-PA 1..316 1..316 1649 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12819-PA 316 GD12819-PA 1..316 1..316 1662 97.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11302-PA 314 GJ11302-PA 1..314 1..316 1361 82.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20554-PA 325 GK20554-PA 1..325 1..316 1333 78.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20233-PA 316 GE20233-PA 1..316 1..316 1495 94.9 Plus

GH18603.hyp Sequence

Translation from 154 to 1104

> GH18603.hyp
MFHFSGFNMMFPEGRNFHANYKCFSVSMLPGNERTDVEKGGKIIMPPSAL
DTLTRLNVEYPMLFKLTNVKKSRSSHAGVLEFVADEGKCYLPHWMMENLL
LGEGDILNIESVSLPVATFSKFQPHSTDFLDITNPKAVLENALRNFACLT
RGDVIAIKYNKKVYELCVLETKPGNAVSIIECDMNVEFEAPVGYKDHSET
QASGSGQQGAAGTVGGEIAGATNAILEEVVETFKGSGVRLDGKKKKESQL
ETPVVKKVLARGVPDYDFQFGLIRFDRNIRPISDRSQEDDAVAGNADASD
AESFHGTGFSMKKTRK*

GH18603.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
Ufd1-like-PA 316 CG6233-PA 1..316 1..316 1643 100 Plus