Clone GH18608 Report

Search the DGRC for GH18608

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:186
Well:8
Vector:pOT2
Associated Gene/TranscriptCG11842-RA
Protein status:GH18608.pep: gold
Preliminary Size:1237
Sequenced Size:1136

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11842 2001-01-01 Release 2 assignment
CG11842 2003-01-01 Sim4 clustering to Release 3
CG11842 2003-02-27 Blastp of sequenced clone
CG11842 2008-04-29 Release 5.5 accounting
CG11842 2008-08-15 Release 5.9 accounting
CG11842 2008-12-18 5.12 accounting

Clone Sequence Records

GH18608.complete Sequence

1136 bp (1136 high quality bases) assembled on 2003-02-27

GenBank Submission: BT010099

> GH18608.complete
AAACGTAGAGGTAGCCACACGATGAGCAGCGCGATCTTCGCCAAGATTGT
CCAGCTGGGAGCAGTATTGCTGGTTTCATTCGTCGCATGGGCGTCAGCTC
AGGATTCGGATATAGCCAGGACGTGCACTGCCTACAAGAGAAGCGTTTGG
GAGGAGACGTCCGAGTTCAGCTTTCTGATCGAGAACGCTCCGATTATCTA
CAAGACCCTGGACAAATGCACTAGCTATGCGCCGCTCATCATCGGCGGAG
GACCCGCCGTGCCCAAGGAGTTCCCGCATGCTGCGCGCCTGGGACACAAA
GATGAGAATGGCGAGGTGGAATGGTTCTGTGGCGGAACACTTATCAGCGA
CAGACATGTGCTCACCGCAGCGCATTGCCACTACTCACCACAAGGATCAG
TGAACATCGCGCGCCTCGGGGACCTGGAATTCGACACCAACAACGACGAT
GCGGATCCGGAGGACTTCGATGTGAAGGACTTCACCGCGCACCCCGAATT
TAGCTACCCGGCGATTTACAACGACATTTCCGTGGTACGATTGAGTCGAC
CCGTAACCTTCAACGATTACAAGCATCCGGCCTGTCTACCCTTCGACGAT
GGGCGATTGGGGACCTCCTTCATAGCCATCGGTTGGGGTCAGCTGGAGAT
CGTGCCCAGGACGGAGAACAAAAAGCTACAGAAAGTGAAGCTCTACAACT
ATGGAACGCGCTGCAGGATTACGGCGGATAGAAATGATGAGCTACCCGAG
GGATATAATGCTACCACCCAACTGTGCATCGGGTCCAACGAGCACAAGGA
CACCTGCAACGGCGATTCCGGCGGACCGGTGCTCATCTATCACATGGACT
ACCCCTGCATGTACCATGTGATGGGTATCACATCCATCGGAGTGGCCTGC
GACACACCCGATCTTCCCGCGATGTACACACGGGTTCACTTCTACCTGGA
CTGGATTAAGCAGCAGCTGGCCAAAAATTAGAATTGATATTTACATACGA
AAATTTGACTCCACAGTTCTGTGGATAACTTATCAAAAGGAGTTTAACTA
ACTTCAGTTTTGAGTGCATTATGGGAAACAATAGTAAATGGAAAATAAAG
CTGAATTGATTGAGTATTAAAAAAAAAAAAAAAAAA

GH18608.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:17:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11842-RA 1299 CG11842-RA 110..1228 1..1119 5595 100 Plus
CG11841-RA 1281 CG11841-RA 903..1016 768..881 225 79.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 24876132..24876857 393..1118 3585 99.6 Plus
chr3R 27901430 chr3R 24875796..24876066 122..392 1355 100 Plus
chr3R 27901430 chr3R 24875624..24875744 1..121 605 100 Plus
chr3R 27901430 chr3R 24874891..24875004 768..881 225 79.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:58:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29053188..29053914 393..1119 3635 100 Plus
3R 32079331 3R 29052852..29053122 122..392 1355 100 Plus
3R 32079331 3R 29052680..29052800 1..121 605 100 Plus
3R 32079331 3R 29051947..29052060 768..881 225 79.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 28794019..28794745 393..1119 3635 100 Plus
3R 31820162 3R 28793683..28793953 122..392 1355 100 Plus
3R 31820162 3R 28793511..28793631 1..121 605 100 Plus
3R 31820162 3R 28792778..28792891 768..881 225 79.8 Plus
3R 31820162 3R 28794977..28795037 922..982 170 85.2 Plus
Blast to na_te.dros performed on 2019-03-16 05:22:16 has no hits.

GH18608.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:23:00 Download gff for GH18608.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 24875624..24875744 1..121 100 -> Plus
chr3R 24875796..24876066 122..392 100 -> Plus
chr3R 24876132..24876857 393..1118 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:48:14 Download gff for GH18608.complete
Subject Subject Range Query Range Percent Splice Strand
CG11842-RA 1..960 22..981 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:47:44 Download gff for GH18608.complete
Subject Subject Range Query Range Percent Splice Strand
CG11842-RA 1..960 22..981 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:02:57 Download gff for GH18608.complete
Subject Subject Range Query Range Percent Splice Strand
CG11842-RA 1..960 22..981 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:39:07 Download gff for GH18608.complete
Subject Subject Range Query Range Percent Splice Strand
CG11842-RA 1..960 22..981 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:01:51 Download gff for GH18608.complete
Subject Subject Range Query Range Percent Splice Strand
CG11842-RA 1..960 22..981 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:59:44 Download gff for GH18608.complete
Subject Subject Range Query Range Percent Splice Strand
CG11842-RA 1..1118 1..1118 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:47:44 Download gff for GH18608.complete
Subject Subject Range Query Range Percent Splice Strand
CG11842-RA 1..1118 1..1118 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:57 Download gff for GH18608.complete
Subject Subject Range Query Range Percent Splice Strand
CG11842-RA 1..1118 1..1118 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:39:07 Download gff for GH18608.complete
Subject Subject Range Query Range Percent Splice Strand
CG11842-RA 1..1118 1..1118 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:01:51 Download gff for GH18608.complete
Subject Subject Range Query Range Percent Splice Strand
CG11842-RA 1..1118 1..1118 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:23:00 Download gff for GH18608.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29052680..29052800 1..121 100 -> Plus
3R 29052852..29053122 122..392 100 -> Plus
3R 29053188..29053913 393..1118 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:23:00 Download gff for GH18608.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29052680..29052800 1..121 100 -> Plus
3R 29052852..29053122 122..392 100 -> Plus
3R 29053188..29053913 393..1118 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:23:00 Download gff for GH18608.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29052680..29052800 1..121 100 -> Plus
3R 29052852..29053122 122..392 100 -> Plus
3R 29053188..29053913 393..1118 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:57 Download gff for GH18608.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24878402..24878522 1..121 100 -> Plus
arm_3R 24878574..24878844 122..392 100 -> Plus
arm_3R 24878910..24879635 393..1118 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:09:27 Download gff for GH18608.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28793683..28793953 122..392 100 -> Plus
3R 28794019..28794744 393..1118 100   Plus
3R 28793511..28793631 1..121 100 -> Plus

GH18608.hyp Sequence

Translation from 0 to 980

> GH18608.hyp
KRRGSHTMSSAIFAKIVQLGAVLLVSFVAWASAQDSDIARTCTAYKRSVW
EETSEFSFLIENAPIIYKTLDKCTSYAPLIIGGGPAVPKEFPHAARLGHK
DENGEVEWFCGGTLISDRHVLTAAHCHYSPQGSVNIARLGDLEFDTNNDD
ADPEDFDVKDFTAHPEFSYPAIYNDISVVRLSRPVTFNDYKHPACLPFDD
GRLGTSFIAIGWGQLEIVPRTENKKLQKVKLYNYGTRCRITADRNDELPE
GYNATTQLCIGSNEHKDTCNGDSGGPVLIYHMDYPCMYHVMGITSIGVAC
DTPDLPAMYTRVHFYLDWIKQQLAKN*

GH18608.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11842-PA 319 CG11842-PA 1..319 8..326 1731 100 Plus
CG11841-PA 319 CG11841-PA 34..316 42..325 967 61.6 Plus
CG11843-PB 316 CG11843-PB 2..314 15..324 814 50 Plus
CG11843-PA 316 CG11843-PA 2..314 15..324 814 50 Plus
CG4927-PC 362 CG4927-PC 103..356 78..320 455 38.5 Plus

GH18608.pep Sequence

Translation from 21 to 980

> GH18608.pep
MSSAIFAKIVQLGAVLLVSFVAWASAQDSDIARTCTAYKRSVWEETSEFS
FLIENAPIIYKTLDKCTSYAPLIIGGGPAVPKEFPHAARLGHKDENGEVE
WFCGGTLISDRHVLTAAHCHYSPQGSVNIARLGDLEFDTNNDDADPEDFD
VKDFTAHPEFSYPAIYNDISVVRLSRPVTFNDYKHPACLPFDDGRLGTSF
IAIGWGQLEIVPRTENKKLQKVKLYNYGTRCRITADRNDELPEGYNATTQ
LCIGSNEHKDTCNGDSGGPVLIYHMDYPCMYHVMGITSIGVACDTPDLPA
MYTRVHFYLDWIKQQLAKN*

GH18608.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16273-PA 323 GF16273-PA 1..322 1..318 1149 63.4 Plus
Dana\GF16272-PA 313 GF16272-PA 9..311 15..318 1003 58.9 Plus
Dana\GF16274-PA 314 GF16274-PA 19..313 26..318 845 52.4 Plus
Dana\GF11395-PA 359 GF11395-PA 99..354 70..314 424 37.1 Plus
Dana\GF13554-PA 363 GF13554-PA 104..357 71..313 414 35.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11637-PA 318 GG11637-PA 2..318 3..319 1567 89 Plus
Dere\GG11638-PA 312 GG11638-PA 7..312 10..318 1153 69.3 Plus
Dere\GG11636-PA 320 GG11636-PA 6..318 12..319 971 58.3 Plus
Dere\GG11639-PA 334 GG11639-PA 20..332 8..317 831 50.3 Plus
Dere\GG11232-PA 238 GG11232-PA 2..234 87..318 717 57.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18679-PA 328 GH18679-PA 7..326 1..318 945 54.8 Plus
Dgri\GH18677-PA 317 GH18677-PA 13..316 14..319 939 56.7 Plus
Dgri\GH18678-PA 325 GH18678-PA 7..323 1..318 894 53 Plus
Dgri\GH18680-PA 287 GH18680-PA 2..286 34..319 841 55.4 Plus
Dgri\GH21187-PA 368 GH21187-PA 81..363 44..314 434 36.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG11842-PA 319 CG11842-PA 1..319 1..319 1731 100 Plus
CG11841-PA 319 CG11841-PA 34..316 35..318 967 61.6 Plus
CG11843-PB 316 CG11843-PB 2..314 8..317 814 50 Plus
CG11843-PA 316 CG11843-PA 2..314 8..317 814 50 Plus
CG4927-PC 362 CG4927-PC 103..356 71..313 455 38.5 Plus
CG3700-PA 360 CG3700-PA 89..354 60..313 418 35 Plus
snk-PB 435 CG7996-PB 178..429 65..314 384 35.3 Plus
snk-PA 435 CG7996-PA 178..429 65..314 384 35.3 Plus
Sp7-PF 391 CG3066-PF 132..389 68..316 329 32.5 Plus
Sp7-PE 391 CG3066-PE 132..389 68..316 329 32.5 Plus
Sp7-PA 391 CG3066-PA 132..389 68..316 329 32.5 Plus
CG14642-PC 392 CG14642-PC 150..387 79..313 314 31.7 Plus
CG14642-PB 392 CG14642-PB 150..387 79..313 314 31.7 Plus
CG11670-PD 404 CG11670-PD 145..389 75..312 311 33.3 Plus
Hayan-PA 378 CG6361-PA 137..369 84..313 305 32.5 Plus
Hayan-PD 637 CG6361-PD 396..628 84..313 305 32.5 Plus
Hayan-PB 637 CG6361-PB 396..628 84..313 305 32.5 Plus
CG9372-PA 408 CG9372-PA 172..402 71..312 298 34.7 Plus
psh-PA 394 CG6367-PA 144..385 73..313 295 33.5 Plus
CG7432-PB 721 CG7432-PB 475..716 73..313 294 31.7 Plus
spirit-PD 393 CG2056-PD 132..362 73..313 283 33.3 Plus
spirit-PC 393 CG2056-PC 132..362 73..313 283 33.3 Plus
spirit-PA 393 CG2056-PA 132..362 73..313 283 33.3 Plus
spirit-PB 393 CG2056-PB 132..362 73..313 283 33.3 Plus
CG1299-PB 442 CG1299-PB 188..438 69..316 280 29.9 Plus
CG1299-PA 511 CG1299-PA 257..507 69..316 280 29.9 Plus
MP1-PA 390 CG1102-PA 123..388 68..316 276 29.4 Plus
MP1-PC 399 CG1102-PC 132..397 68..316 276 29.4 Plus
MP1-PE 400 CG1102-PE 133..398 68..316 276 29.4 Plus
CG4998-PA 891 CG4998-PA 653..885 83..314 275 33.5 Plus
CG4998-PB 1185 CG4998-PB 947..1179 83..314 275 33.5 Plus
CG3355-PA 314 CG3355-PA 76..307 73..317 273 32.5 Plus
ea-PA 392 CG4920-PA 128..390 73..316 273 30.9 Plus
CG4914-PA 374 CG4914-PA 128..360 73..312 272 35 Plus
SPE-PA 400 CG16705-PA 131..398 69..316 270 32.3 Plus
CG5909-PA 381 CG5909-PA 128..380 71..316 269 33 Plus
ea-PB 261 CG4920-PB 7..259 83..316 268 30.9 Plus
CG11668-PA 398 CG11668-PA 128..396 53..316 267 28.1 Plus
CG8738-PA 459 CG8738-PA 206..451 77..319 266 29.2 Plus
CG6865-PB 285 CG6865-PB 28..279 66..314 264 29.9 Plus
CG9737-PA 424 CG9737-PA 150..406 73..312 264 31.7 Plus
grass-PA 335 CG5896-PA 100..333 97..319 263 30.9 Plus
grass-PB 377 CG5896-PB 142..375 97..319 263 30.9 Plus
CG8586-PC 444 CG8586-PC 208..434 97..316 263 29.1 Plus
CG8586-PB 444 CG8586-PB 208..434 97..316 263 29.1 Plus
CG8586-PA 444 CG8586-PA 208..434 97..316 263 29.1 Plus
l(2)k05911-PC 639 CG31728-PC 400..638 73..316 263 32.1 Plus
CG10472-PA 290 CG10472-PA 47..282 73..315 262 31.2 Plus
CG11836-PI 281 CG11836-PI 45..274 73..316 259 30.2 Plus
CG11836-PJ 333 CG11836-PJ 97..326 73..316 259 30.2 Plus
CG30088-PB 281 CG30088-PB 19..279 42..319 258 31.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24189-PA 327 GI24189-PA 34..325 25..318 977 59.5 Plus
Dmoj\GI24188-PA 316 GI24188-PA 1..315 1..319 937 55.8 Plus
Dmoj\GI24190-PA 315 GI24190-PA 20..313 26..317 924 55.6 Plus
Dmoj\GI20473-PA 368 GI20473-PA 107..363 71..314 430 37.3 Plus
Dmoj\GI19100-PA 358 GI19100-PA 99..352 70..313 424 37.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24251-PA 317 GL24251-PA 6..315 12..318 1039 59.8 Plus
Dper\GL24254-PA 316 GL24254-PA 16..316 22..318 851 52.6 Plus
Dper\GL24252-PA 183 GL24252-PA 1..182 1..182 674 66.5 Plus
Dper\GL10135-PA 358 GL10135-PA 102..352 71..313 443 35.8 Plus
Dper\GL17283-PA 349 GL17283-PA 91..343 71..313 424 36.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11229-PA 319 GA11229-PA 1..317 1..318 1217 68.2 Plus
Dpse\GA11228-PA 317 GA11228-PA 6..315 12..318 1043 60.1 Plus
Dpse\GA11230-PA 315 GA11230-PA 9..314 15..318 866 52.4 Plus
Dpse\GA17623-PA 358 GA17623-PA 102..352 71..313 441 35.8 Plus
Dpse\GA18531-PA 366 GA18531-PA 108..360 71..313 428 36.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12760-PA 319 GM12760-PA 1..319 1..319 1636 95 Plus
Dsec\GM12758-PA 319 GM12758-PA 34..317 35..319 970 61.4 Plus
Dsec\GM12761-PA 378 GM12761-PA 183..377 124..318 858 80 Plus
Dsec\GM12762-PA 316 GM12762-PA 2..314 8..317 801 48.4 Plus
Dsec\GM26534-PA 239 GM26534-PA 2..234 87..318 733 57.9 Plus
Dsec\GM12761-PA 378 GM12761-PA 2..175 47..221 705 75.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21407-PA 319 GD21407-PA 34..317 35..319 974 61.8 Plus
Dsim\GD21042-PA 282 GD21042-PA 30..276 72..317 790 58.3 Plus
Dsim\GD21409-PA 235 GD21409-PA 2..233 88..317 637 51.1 Plus
Dsim\GD11950-PA 98 GD11950-PA 1..97 222..318 472 86.6 Plus
Dsim\GD11206-PA 362 GD11206-PA 103..356 71..313 439 36.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10535-PA 317 GJ10535-PA 4..316 5..319 971 56.2 Plus
Dvir\GJ10536-PA 324 GJ10536-PA 32..321 26..317 941 58.9 Plus
Dvir\GJ10537-PA 314 GJ10537-PA 20..314 26..319 921 53.4 Plus
Dvir\GJ22231-PA 372 GJ22231-PA 113..367 70..314 438 38.5 Plus
Dvir\GJ22323-PA 365 GJ22323-PA 86..359 52..313 433 35.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22569-PA 313 GK22569-PA 18..301 35..317 1009 61.4 Plus
Dwil\GK22568-PA 320 GK22568-PA 1..318 1..318 918 53.3 Plus
Dwil\GK19113-PA 307 GK19113-PA 22..307 30..319 896 55.5 Plus
Dwil\GK22566-PA 232 GK22566-PA 5..224 98..318 770 62 Plus
Dwil\GK16800-PA 330 GK16800-PA 53..324 53..313 448 36 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23828-PA 319 GE23828-PA 1..319 1..319 1551 88.1 Plus
Dyak\GE23829-PA 297 GE23829-PA 13..297 34..319 1206 75.9 Plus
Dyak\GE23826-PA 323 GE23826-PA 28..318 28..319 970 60.6 Plus
Dyak\GE23830-PA 316 GE23830-PA 3..314 1..317 820 48.3 Plus
Dyak\GE10399-PA 202 GE10399-PA 2..199 87..319 553 47.9 Plus