Clone GH18625 Report

Search the DGRC for GH18625

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:186
Well:25
Vector:pOT2
Associated Gene/TranscriptCG3342-RA
Protein status:GH18625.pep: gold
Preliminary Size:1709
Sequenced Size:1679

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3342 2001-01-01 Release 2 assignment
CG3342 2001-09-19 Blastp of sequenced clone
CG3342 2003-01-01 Sim4 clustering to Release 3
CG3342 2008-04-29 Release 5.5 accounting
CG3342 2008-08-15 Release 5.9 accounting
CG3342 2008-12-18 5.12 accounting

Clone Sequence Records

GH18625.complete Sequence

1679 bp (1679 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058411

> GH18625.complete
TTTTTAAACATTTTCGATGCGACTGCATAATTAGGCATGGAAATCGGCAA
CGATCAGTCCTATCAGGACTTCTTCGACAAGTTGCGAAGTGAATCGGGTC
CTCGCAACTTGCGCCAGATCTTTGAGGACGACGATCGTCCGCTGGCGAAC
GAATCATCCAGCTTGCGCTATCAGCCAGGCAGCTCCAAAAAATTGCAGGC
TGGCAAAAGACCGGCCATGACCAGGAGTAGCACCCAGGAGACGGGTGATT
CACCGCCTGCCGCCTGGAACACGGCCATTGCCAAGGTGGTGCATGCCTAT
CGGAGCAGCGAGAACGTTGGACGCGTCGGCCTGGCCCTCTCGATTCTGGG
CGAGATGGAGGCCAGCAAGCTGATTGTCTACCGCAGCAAGAGTCAGGTGC
TGACCACGCTGCAGTTGACACCGCGTGGCGGCAAGGTGATACTGCGCGAA
TCCTATCTGCAGTTCTACGATGACGAGCAGCGCTTCTGGAGCCTGCGATT
CGACAAGGAACCGGATGAGAAGGAATTCATAACGTTTATGGTCAAAAACA
AACTGCCAGTGGAGCACTATCTCAGCGAGATCTCATCCTCCAGCTCGGCA
TCGCCTTCGCGTGAGGATTTATCTAAGATCCGAACTAAAGCAACGGTCAC
AAAGACGACGCCTAATCCGCCACAGCCGCAACCACGTTCCCGCGTAACGC
TGCCAACGCTGGAGAAGGCGGACGATGAGGAACGCGAACGGGAAACAGAG
ACACCTTCCAATGAGGATGTGATAGTAACGCCAGTGCCGCGACCCATAGG
TTCGTCAAATGCTCACAGGAAACTCAGTGCCAGTTCCCTGGCGGTGGCCA
ACGCTTCAACGAGCAGCGATACTCCGTTGGCTGTGACGACACTGGACAAA
TATCTAGACGAACAGCGTGCCTCGGGTGCGTTAATGGAGCACAAGATGGA
CGCCATTCTGCAGGCCATGAATCGCATGGGCGGCCAGTCGAGTGTTGCGC
CCAAGAAGCCCAGTGATCCGCTGCTGGAACGCGACAGCGAGGACGAGATG
CTGGAGCTGGAGCAGAAGCTGCTCAACTTGAAGCGGGAGAATCGAGCGCT
AATGCGCAACCTCAAGGCACGCGAACAGGCGCTGGAGGATCTACGCTGCT
CGGCGTGCGCCCTTTGCGAGGAGCTACTAGTCCAGAATGGCGAGCTCAAG
TCGCAGAATGCCCAGCTGTTGTTAGCCAGCCAGCATATTTCCGATTCAAG
CACAGCTGCTTCGCCTGCCCATTGCCGCAATTGCGAGTCGTCTTCCCGGC
AAATAGCCAAAATGCAGCTACACATTTCCGCACTGCAGGAAGCGCTGCGA
ATCTTTCAGAAATCAGGCGACTCCAGCTCCAGTTCGGGTCGGTTATAGCA
CCTAACGTAGGCGTATTATATATGTTCGGTATTACTATCGAAAAGTGTAT
TAAATCATTTGTTAGGTCGCGTAACATATCCACAAATACAAGCCAGACAC
TATTAGCTATCTTTAAGTCATTAGATTGCCATGTTATTGGGCTCATTTAC
AAAGCGATTTTCTAATCTATTACAACTATTATTACTAAATGTGAGATATA
AAATATGTTGCGGAAGATTATAATTAATAGCAACCCATGCTTTGCTCTCT
CTCAATTATGAAAAAAAAAAAAAAAAAAA

GH18625.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3342-RA 1719 CG3342-RA 60..1719 1..1660 8300 100 Plus
CG3918-RA 1947 CG3918-RA 1674..1947 1665..1392 1370 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6418362..6419934 1660..88 7805 99.7 Minus
chrX 22417052 chrX 6420007..6420095 89..1 445 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:58:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6526101..6527678 1665..88 7890 100 Minus
X 23542271 X 6527751..6527839 89..1 445 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6534199..6535776 1665..88 7890 100 Minus
X 23527363 X 6535849..6535937 89..1 445 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:06:59 has no hits.

GH18625.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:08:08 Download gff for GH18625.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6420007..6420095 1..89 100   Minus
chrX 6418362..6419932 90..1660 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:48:19 Download gff for GH18625.complete
Subject Subject Range Query Range Percent Splice Strand
CG3342-RA 1..1362 37..1398 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:06:40 Download gff for GH18625.complete
Subject Subject Range Query Range Percent Splice Strand
CG3342-RA 1..1362 37..1398 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:29:33 Download gff for GH18625.complete
Subject Subject Range Query Range Percent Splice Strand
CG3342-RA 1..1362 37..1398 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:37:27 Download gff for GH18625.complete
Subject Subject Range Query Range Percent Splice Strand
CG3342-RA 1..1362 37..1398 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:36:57 Download gff for GH18625.complete
Subject Subject Range Query Range Percent Splice Strand
CG3342-RA 1..1362 37..1398 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:56:31 Download gff for GH18625.complete
Subject Subject Range Query Range Percent Splice Strand
CG3342-RA 23..1682 1..1660 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:06:40 Download gff for GH18625.complete
Subject Subject Range Query Range Percent Splice Strand
CG3342-RA 23..1682 1..1660 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:29:33 Download gff for GH18625.complete
Subject Subject Range Query Range Percent Splice Strand
CG3342-RA 50..1709 1..1660 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:37:27 Download gff for GH18625.complete
Subject Subject Range Query Range Percent Splice Strand
CG3342-RA 23..1682 1..1660 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:36:57 Download gff for GH18625.complete
Subject Subject Range Query Range Percent Splice Strand
CG3342-RA 50..1709 1..1660 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:08:08 Download gff for GH18625.complete
Subject Subject Range Query Range Percent Splice Strand
X 6526106..6527676 90..1660 100 <- Minus
X 6527751..6527839 1..89 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:08:08 Download gff for GH18625.complete
Subject Subject Range Query Range Percent Splice Strand
X 6526106..6527676 90..1660 100 <- Minus
X 6527751..6527839 1..89 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:08:08 Download gff for GH18625.complete
Subject Subject Range Query Range Percent Splice Strand
X 6526106..6527676 90..1660 100 <- Minus
X 6527751..6527839 1..89 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:29:33 Download gff for GH18625.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6420139..6421709 90..1660 100 <- Minus
arm_X 6421784..6421872 1..89 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:14:37 Download gff for GH18625.complete
Subject Subject Range Query Range Percent Splice Strand
X 6534204..6535774 90..1660 100 <- Minus
X 6535849..6535937 1..89 100   Minus

GH18625.hyp Sequence

Translation from 36 to 1397

> GH18625.hyp
MEIGNDQSYQDFFDKLRSESGPRNLRQIFEDDDRPLANESSSLRYQPGSS
KKLQAGKRPAMTRSSTQETGDSPPAAWNTAIAKVVHAYRSSENVGRVGLA
LSILGEMEASKLIVYRSKSQVLTTLQLTPRGGKVILRESYLQFYDDEQRF
WSLRFDKEPDEKEFITFMVKNKLPVEHYLSEISSSSSASPSREDLSKIRT
KATVTKTTPNPPQPQPRSRVTLPTLEKADDEERERETETPSNEDVIVTPV
PRPIGSSNAHRKLSASSLAVANASTSSDTPLAVTTLDKYLDEQRASGALM
EHKMDAILQAMNRMGGQSSVAPKKPSDPLLERDSEDEMLELEQKLLNLKR
ENRALMRNLKAREQALEDLRCSACALCEELLVQNGELKSQNAQLLLASQH
ISDSSTAASPAHCRNCESSSRQIAKMQLHISALQEALRIFQKSGDSSSSS
GRL*

GH18625.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3342-PA 453 CG3342-PA 1..453 1..453 2272 100 Plus

GH18625.pep Sequence

Translation from 36 to 1397

> GH18625.pep
MEIGNDQSYQDFFDKLRSESGPRNLRQIFEDDDRPLANESSSLRYQPGSS
KKLQAGKRPAMTRSSTQETGDSPPAAWNTAIAKVVHAYRSSENVGRVGLA
LSILGEMEASKLIVYRSKSQVLTTLQLTPRGGKVILRESYLQFYDDEQRF
WSLRFDKEPDEKEFITFMVKNKLPVEHYLSEISSSSSASPSREDLSKIRT
KATVTKTTPNPPQPQPRSRVTLPTLEKADDEERERETETPSNEDVIVTPV
PRPIGSSNAHRKLSASSLAVANASTSSDTPLAVTTLDKYLDEQRASGALM
EHKMDAILQAMNRMGGQSSVAPKKPSDPLLERDSEDEMLELEQKLLNLKR
ENRALMRNLKAREQALEDLRCSACALCEELLVQNGELKSQNAQLLLASQH
ISDSSTAASPAHCRNCESSSRQIAKMQLHISALQEALRIFQKSGDSSSSS
GRL*

GH18625.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21902-PA 327 GF21902-PA 8..183 11..192 193 31.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17671-PA 449 GG17671-PA 1..449 1..453 1933 86.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12631-PA 472 GH12631-PA 7..469 8..449 539 34.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3342-PA 453 CG3342-PA 1..453 1..453 2272 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21468-PA 547 GI21468-PA 1..519 1..444 680 37.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14314-PA 435 GL14314-PA 1..431 1..437 716 42.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17391-PA 435 GA17391-PA 1..431 1..437 717 42.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12570-PA 440 GM12570-PA 1..440 1..453 1981 89.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16488-PA 494 GJ16488-PA 1..476 1..444 738 43.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19723-PA 485 GK19723-PA 1..476 1..437 732 42.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16461-PA 452 GE16461-PA 1..452 1..453 1759 80.7 Plus