Clone GH18645 Report

Search the DGRC for GH18645

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:186
Well:45
Vector:pOT2
Associated Gene/TranscripttipE-RA
Protein status:GH18645.pep: gold
Preliminary Size:3216
Sequenced Size:3373

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1232 2001-01-01 Release 2 assignment
CG1232 2001-07-04 Blastp of sequenced clone
tipE 2008-04-29 Release 5.5 accounting
tipE 2008-08-15 Release 5.9 accounting
CG18675 2008-08-15 Release 5.9 accounting
tipE 2008-12-18 5.12 accounting
CG18675 2008-12-18 5.12 accounting

Clone Sequence Records

GH18645.complete Sequence

3373 bp (3373 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060317

> GH18645.complete
CTGAAGAGTTCAGCCGTCGTGTTGTCGCCGTGCTCCTTTTTTGGTTGTCG
CCGTCGTCGTTGTCGTTCGCCGTCGTAGTTGTCGTTGGTTTGTCTGTCTC
TGTATTGTTGCCACTAAAGAAAGGCAAGAGGAACCGAAAATGCCACGAAA
GAAAATGTGGAGCGTGAATGTGACAATTGTTCAGCGTTAGCAACTTTTGA
CCCCGTGCGCAATCAGGTCACCATTGTTCCATGCCTTTGTGAACTGCACG
TGGCAAGGATAGAAAGGAGAAGAAGAGAAGGAAAGAGCATGCTGGAGAGA
GAGGAAGAGTGCTAGGAATAGCCAACCAAAGCAAAAAAGTGAAAAAGACA
AACAAAACTGTCCGTCCAGCATTCGTTTTTCTACACACATTTCGAAAGAA
TGTAAATGTAAAGTGAAGAAAAACAGAGAGTAAGAGAGAGACCTCAAAAC
TGGCCATTGGCAGGCCAAACACATACACAGGCACACCAAGCATACAGGAC
ACACAGGCCACACACGACACACACGCACGAACATCCAGTGCTTTGCCGCA
GTCATAAAATAATCAAGAAGCAGCTAAATCAGGCAAAAGCAAGACGACTG
CAACGTGCTGATGTTGACGAAACATCTCCATTGGGACGAATAAAGCAATT
AGCAAAGGTTCACGATTGTTGCCACCACACTGCCAGGAGGCGGAGGAAGC
TGGAGGGGATTAAGAATGCGGGATACGTGGGACTCGCACTCGGACTCCGT
GGAGTATTTAGCCTAATCGAGTGAAGCGATGCCGTTGAACTGGAGCACAA
AGATTCAGGACCCTCCCTGCAAAGGTCAGCTATGTGCGAGATAACGGGAC
ACCGGACAGCCAGGCAACCAAAGCGAAAGAAGCAAAAGCAGAAGCAACAG
CAAAAGCAAACGAAACGAGAAATCGAACTCTCCCTGTGATATAACTTGCA
CCGTAATCGTAATCTAGCTATTAGTTATCGTTATCGATCAGTAATCGCCG
CAATTGTAAGCTAAGTTATCGCACTTATCGCCGCTCTGCTCCGCCGCCGC
CACCGCCAGACCTGCGCCTAAAAACTAATAATATTAATAAAATTAAATAA
TACCATAATATATAGTAGACCTCAAACCCGACCAAAATCGAGCTAAAACA
TGGGAGACGAGCAGGACAAACGCACCGGCAAGGAGAAGCTGCTCTTCTAC
ACCACCGCCTTCTTCATCCTGCTGGGCACCTTCAGCCTGTTCGCCTTCCT
CTTCCTGGTGCCCTTCGTCATCGAGCCCGCCTTCACCACGATCTTCATGC
AGTTCGAGGAGGTTCCGGCGCTCTGCGAAACGTACGACACGGAGATCTAC
TACGGGGCCAAGAACTGTTCGTGGTCGTCCTGCCGCGAGGGCTGCACCAA
GGACATCTATACGTGCACCCAGATTCGGGTGAACTACCGTCTCAATCTAT
ATAACTTCACCGATGAGTTCAACTTCACGGAGTACCACATCAATCTCAAG
GAGGCGGAGCGCATCCTGCCGCCCGTCAAGCGAACGGATCGCTATGAGAG
AGCTCTGAGGAGCGACTACGAGTACGATAATCTGGGTGGTGGCACCGGCT
TGGACATCGACTTAGGCGCCGGCCGGATGGAACAGCTCAATTTTGGGGAT
GCCGACGGCTCCAATGGCTACCTCATTGAGGATTCGGAGGATACGCGCGG
TCTGAGCGCTTCGGGTACCCTCATTTCGGACGAGCGGAGGCCGTTCGACG
AGATCTCCGAGCTGAACGAGGGCCTGATGGGGAACCGCTCCATGTACTAC
TATGTGGGAGCCAGGCTCTTTCCGAATGTAAAGGGCTGTGGCTACCCGCC
AATGCTCAACTGTACCATCTGGCTAAAGAGGTACACCAAGATCGGCATGA
AGTTCCCCTGCTACTACTCCAAGGTGGACCCAAGTCTGGTCATCAGCGAC
CTGGACTACTGGCAGAACACCCTAAACTTGGTCTACTCGATGGCCATTCC
AATACCCTCGTTCATCATCTCGGTGATTTATCTGACGTATGCCTACTTCA
AGATATACAACGAGGATGAGGAGACGGCGCCGTTGGACAAGAACGCCGAA
GACATGGACATCGATGATATCGATGCCGTGGACGACAGCGATGGTGCAGT
CCTGGCGGACAATGTGGCCGGTAGCCAAATCATTAACATGGACTCAACCA
CCAACGACAGTTGTCTGGAGGGTGTCCTGCCCAACGGCGGTCCCGGCATG
ACCGCCTCCATATCGCAGGGTGGCTCCGTCACCACGCCGGGTCCGTACAT
CGCGCAGAGTCCGGCGGGCTCGCAGATGACGCCCAACTCGGAGATCAACT
CGTTCGGTCACCAGCTGAAAGTCCAGATGGCCGACGAGCTATCGAGGGAT
TCGCTGGAGAACGGAGCTATCTCCACGTCCAACTCAGTGCAAGGAAACTT
GAGCAAGACGATGACGACGAGTATCTCAACTCCTCCTGGGCCGACAGCGG
CAGTCTGAAACGTCAGGCGCATGGTCTGGAAAATGTTAGATTCCGATTCA
GAAAATGAGCCGCTACTGGACTCGTAGACCGCCGAGCGGTCAGCCACGGA
CCACGGAGCAGGCGGAGATCACCGGAGCGGAGACCCAACCCGAAAAAGAA
CTCATGAGGCAACCGTAAAGCGCGATACACCCCAAGTATTTCTACCCGAA
ACAATCGACAACAACGCAGCGAATGCGACCGAACCTGAATACCTTCAGAG
CTGTTAGCGGCACCTAATGAACTATGATAGATTATATTTACCTTATGAAC
TAGCTACTCGGATTCACACCTACACTCACACAAACACTCACCCACATTAA
GCACGCTAGATAGCCGGAGTAACTCCGGACTGCCACACCCACTCAAAATT
GCAATGCACGGGCATTATAGTATGTGCACAGTATCTGATATCTGGAGGAT
CTTAGGCGATTGGTACAAATACAATAAAAACATAGGCCGCATGGACTCGA
GCATGGAGTGCTATTCATATACCTAGAGGAAAAACTATAATACTTATACA
CGCATATACAAATATTTACTTGAATTATTTTTCTATTCGCAACAATCGTC
GTCGTCTCGAGGCAGAAACACAGATAAACTCCACCAACTCCACTACCCCA
CTACCCATTGCCCAACATCCACAATCCAAAACCCAAATTCCAAATAGAGC
AAATAAAAGCAAAAGAAAAACAAGGCGCGCAACTTATTTACAAATCGATA
AATCGAGGCGCTGAGGTTTTTTAAATATTGTAATGCCCATTCAAGTGCTG
CAAACCGTAATGCGTAAAAACCGAAAAACAGAAATTAAATTTAACAACAA
ACGAAAAAAAAAAAAAAAAAAAA

GH18645.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
tipE-RA 4084 tipE-RA 44..3399 1..3356 16765 99.9 Plus
tipE-RB 3910 tipE-RB 101..3225 232..3356 15610 99.9 Plus
tipE.b 3919 tipE.b 112..3234 234..3356 15600 99.9 Plus
tipE.b 3919 tipE.b 21..111 1..91 455 100 Plus
tipE-RB 3910 tipE-RB 16..102 1..87 435 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4189061..4191272 233..2444 11045 100 Plus
chr3L 24539361 chr3L 4191577..4192486 2444..3353 4550 100 Plus
chr3L 24539361 chr3L 4187928..4188160 1..233 1165 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:58:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4189675..4191886 233..2444 11045 100 Plus
3L 28110227 3L 4192191..4193103 2444..3356 4565 100 Plus
3L 28110227 3L 4188542..4188774 1..233 1165 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4189675..4191886 233..2444 11045 99.9 Plus
3L 28103327 3L 4192191..4193103 2444..3356 4565 100 Plus
3L 28103327 3L 4188542..4188774 1..233 1165 100 Plus
Blast to na_te.dros performed 2019-03-16 23:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
TART-C 11124 TART-C TARTC 11124bp 654..765 3113..3222 131 62.3 Plus

GH18645.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:41:11 Download gff for GH18645.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4187928..4188160 1..233 100 -> Plus
chr3L 4189062..4191272 234..2444 99 -> Plus
chr3L 4191578..4192486 2445..3353 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:48:24 Download gff for GH18645.complete
Subject Subject Range Query Range Percent Splice Strand
tipE-RB 1..1359 1150..2508 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:25:31 Download gff for GH18645.complete
Subject Subject Range Query Range Percent Splice Strand
tipE-RB 1..1359 1150..2508 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:47:09 Download gff for GH18645.complete
Subject Subject Range Query Range Percent Splice Strand
tipE-RA 1..1359 1150..2508 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:58:31 Download gff for GH18645.complete
Subject Subject Range Query Range Percent Splice Strand
tipE-RB 1..1359 1150..2508 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:55:15 Download gff for GH18645.complete
Subject Subject Range Query Range Percent Splice Strand
tipE-RA 1..1359 1150..2508 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:24:05 Download gff for GH18645.complete
Subject Subject Range Query Range Percent Splice Strand
tipE-RA 13..3365 1..3353 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:25:31 Download gff for GH18645.complete
Subject Subject Range Query Range Percent Splice Strand
tipE-RA 13..3365 1..3353 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:09 Download gff for GH18645.complete
Subject Subject Range Query Range Percent Splice Strand
tipE-RA 44..3396 1..3353 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:58:31 Download gff for GH18645.complete
Subject Subject Range Query Range Percent Splice Strand
tipE-RA 13..3365 1..3353 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:55:15 Download gff for GH18645.complete
Subject Subject Range Query Range Percent Splice Strand
tipE-RA 44..3396 1..3353 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:41:11 Download gff for GH18645.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4188542..4188774 1..233 100 -> Plus
3L 4189676..4191886 234..2444 99 -> Plus
3L 4192192..4193100 2445..3353 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:41:11 Download gff for GH18645.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4188542..4188774 1..233 100 -> Plus
3L 4189676..4191886 234..2444 99 -> Plus
3L 4192192..4193100 2445..3353 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:41:11 Download gff for GH18645.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4188542..4188774 1..233 100 -> Plus
3L 4189676..4191886 234..2444 99 -> Plus
3L 4192192..4193100 2445..3353 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:09 Download gff for GH18645.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4188542..4188774 1..233 100 -> Plus
arm_3L 4189676..4191886 234..2444 99 -> Plus
arm_3L 4192192..4193100 2445..3353 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:36:21 Download gff for GH18645.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4188542..4188774 1..233 100 -> Plus
3L 4189676..4191886 234..2444 99 -> Plus
3L 4192192..4193100 2445..3353 100   Plus

GH18645.pep Sequence

Translation from 1149 to 2507

> GH18645.pep
MGDEQDKRTGKEKLLFYTTAFFILLGTFSLFAFLFLVPFVIEPAFTTIFM
QFEEVPALCETYDTEIYYGAKNCSWSSCREGCTKDIYTCTQIRVNYRLNL
YNFTDEFNFTEYHINLKEAERILPPVKRTDRYERALRSDYEYDNLGGGTG
LDIDLGAGRMEQLNFGDADGSNGYLIEDSEDTRGLSASGTLISDERRPFD
EISELNEGLMGNRSMYYYVGARLFPNVKGCGYPPMLNCTIWLKRYTKIGM
KFPCYYSKVDPSLVISDLDYWQNTLNLVYSMAIPIPSFIISVIYLTYAYF
KIYNEDEETAPLDKNAEDMDIDDIDAVDDSDGAVLADNVAGSQIINMDST
TNDSCLEGVLPNGGPGMTASISQGGSVTTPGPYIAQSPAGSQMTPNSEIN
SFGHQLKVQMADELSRDSLENGAISTSNSVQGNLSKTMTTSISTPPGPTA
AV*

GH18645.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10561-PA 455 GF10561-PA 1..455 1..452 2188 94.9 Plus
Dana\GF23881-PA 311 GF23881-PA 75..168 3..96 220 45.7 Plus
Dana\GF17145-PA 279 GF17145-PA 37..139 8..112 200 41 Plus
Dana\GF23881-PA 311 GF23881-PA 194..273 222..299 161 40 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15201-PA 452 GG15201-PA 1..452 1..452 2383 98.7 Plus
Dere\GG14213-PA 309 GG14213-PA 73..166 3..96 220 45.7 Plus
Dere\GG17316-PA 279 GG17316-PA 37..143 8..110 202 42.1 Plus
Dere\GG14213-PA 309 GG14213-PA 192..271 222..299 161 41.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15930-PA 464 GH15930-PA 1..464 1..452 2096 89.5 Plus
Dgri\GH15550-PA 301 GH15550-PA 65..176 3..122 227 40 Plus
Dgri\GH14179-PA 267 GH14179-PA 47..149 8..112 211 41.9 Plus
Dgri\GH15550-PA 301 GH15550-PA 184..263 222..299 161 41.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
tipE-PB 452 CG1232-PB 1..452 1..452 2385 100 Plus
tipE-PA 452 CG1232-PA 1..452 1..452 2385 100 Plus
Teh2-PA 309 CG15004-PA 73..166 3..96 224 45.7 Plus
Teh2-PB 313 CG15004-PB 73..166 3..96 224 45.7 Plus
Teh1-PA 279 CG12806-PA 37..143 8..110 206 42.1 Plus
Teh1-PB 299 CG12806-PB 37..143 8..110 206 42.1 Plus
Teh2-PA 309 CG15004-PA 196..271 226..299 163 42.1 Plus
Teh2-PB 313 CG15004-PB 196..271 226..299 163 42.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21413-PA 456 GI21413-PA 1..456 1..452 2038 88.7 Plus
Dmoj\GI16579-PA 456 GI16579-PA 1..456 1..452 2038 88.7 Plus
Dmoj\GI16825-PA 298 GI16825-PA 62..173 3..122 228 40 Plus
Dmoj\GI22088-PA 279 GI22088-PA 37..143 8..110 197 41.1 Plus
Dmoj\GI16825-PA 298 GI16825-PA 181..260 222..299 160 41.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12833-PA 455 GL12833-PA 1..455 1..452 2204 94.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11553-PA 455 GA11553-PA 1..455 1..452 2206 94.3 Plus
Dpse\GA13422-PA 304 GA13422-PA 68..161 3..96 218 45.7 Plus
Dpse\GA11821-PB 279 GA11821-PB 37..125 8..96 198 42.7 Plus
Dpse\GA13422-PA 304 GA13422-PA 187..266 222..299 159 40 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14633-PA 452 GM14633-PA 1..452 1..452 2391 99.1 Plus
Dsec\GM14005-PA 309 GM14005-PA 73..166 3..96 220 45.7 Plus
Dsec\GM26201-PA 279 GM26201-PA 37..143 8..110 202 42.1 Plus
Dsec\GM14005-PA 309 GM14005-PA 192..271 222..299 161 41.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13821-PA 434 GD13821-PA 1..397 1..429 2029 90.9 Plus
Dsim\GD13286-PA 309 GD13286-PA 73..166 3..96 220 45.7 Plus
Dsim\GD20749-PA 279 GD20749-PA 37..143 8..110 202 42.1 Plus
Dsim\GD13286-PA 309 GD13286-PA 192..271 222..299 161 41.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12831-PA 485 GJ12831-PA 1..436 1..432 1993 88.9 Plus
Dvir\GJ12573-PA 298 GJ12573-PA 71..173 12..122 220 39.6 Plus
Dvir\GJ24203-PA 279 GJ24203-PA 37..143 8..110 197 41.1 Plus
Dvir\GJ12573-PA 298 GJ12573-PA 181..260 222..299 161 41.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12714-PA 464 GK12714-PA 1..464 1..452 2058 89.1 Plus
Dwil\GK10267-PA 302 GK10267-PA 66..159 3..96 219 44.7 Plus
Dwil\GK14508-PA 321 GK14508-PA 37..143 8..110 198 41.1 Plus
Dwil\GK10267-PA 302 GK10267-PA 161..264 196..299 162 36.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21421-PA 452 GE21421-PA 1..452 1..452 2383 98.7 Plus
Dyak\GE20641-PA 309 GE20641-PA 73..166 3..96 220 45.7 Plus
Dyak\GE24718-PA 279 GE24718-PA 37..143 8..110 202 42.1 Plus
Dyak\GE20641-PA 309 GE20641-PA 192..271 222..299 161 41.2 Plus

GH18645.hyp Sequence

Translation from 1149 to 2507

> GH18645.hyp
MGDEQDKRTGKEKLLFYTTAFFILLGTFSLFAFLFLVPFVIEPAFTTIFM
QFEEVPALCETYDTEIYYGAKNCSWSSCREGCTKDIYTCTQIRVNYRLNL
YNFTDEFNFTEYHINLKEAERILPPVKRTDRYERALRSDYEYDNLGGGTG
LDIDLGAGRMEQLNFGDADGSNGYLIEDSEDTRGLSASGTLISDERRPFD
EISELNEGLMGNRSMYYYVGARLFPNVKGCGYPPMLNCTIWLKRYTKIGM
KFPCYYSKVDPSLVISDLDYWQNTLNLVYSMAIPIPSFIISVIYLTYAYF
KIYNEDEETAPLDKNAEDMDIDDIDAVDDSDGAVLADNVAGSQIINMDST
TNDSCLEGVLPNGGPGMTASISQGGSVTTPGPYIAQSPAGSQMTPNSEIN
SFGHQLKVQMADELSRDSLENGAISTSNSVQGNLSKTMTTSISTPPGPTA
AV*

GH18645.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
tipE-PB 452 CG1232-PB 1..452 1..452 2385 100 Plus
tipE-PA 452 CG1232-PA 1..452 1..452 2385 100 Plus
Teh2-PA 309 CG15004-PA 73..166 3..96 224 45.7 Plus
Teh2-PB 313 CG15004-PB 73..166 3..96 224 45.7 Plus
Teh1-PA 279 CG12806-PA 37..143 8..110 206 42.1 Plus
Teh2-PA 309 CG15004-PA 196..271 226..299 163 42.1 Plus
Teh2-PB 313 CG15004-PB 196..271 226..299 163 42.1 Plus