Clone GH18658 Report

Search the DGRC for GH18658

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:186
Well:58
Vector:pOT2
Associated Gene/TranscriptCG15892-RA
Protein status:GH18658.pep: gold
Preliminary Size:1940
Sequenced Size:1924

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15891 2001-01-01 Release 2 assignment
CG15892 2001-01-01 Release 2 assignment
CG32918 2001-07-04 Blastp of sequenced clone
CG32918 2003-01-01 Sim4 clustering to Release 3
CG15892 2008-04-29 Release 5.5 accounting
CG15892 2008-08-15 Release 5.9 accounting
CG15891 2008-08-15 Release 5.9 accounting
CG15892 2008-12-18 5.12 accounting
CG15891 2008-12-18 5.12 accounting

Clone Sequence Records

GH18658.complete Sequence

1924 bp (1924 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060318

> GH18658.complete
AATAGAACAAAATAGTGCAATGTTTTCGATATTTGGCAAACGCAAGCCCG
CGGAAACGCCCACGGATGACCAGCCCATCCAGGGACCGGCGGAGGCAACC
CGTCCAGGCACCAGTGTCGATGATTTCGTGTTCATAGAGCGCAAACCAGT
ACCGGATGCTCCTCATCCGGGTGTTCCAGCCGGCTCCATGTATCCACCTA
TGCCGCCAGCGGGCTATCTGCCCTATCCGCCGATGCCAGGACCGCGCAGC
GATCAAGTGAAGCAGCCCGGAGCCCAAGGACCCGTCAATTACTTGCAGGA
CATTCCATTCGAGCTGGCACCCGGATTGGCCAACAAGGATCGCTACACCA
GCACCCAAATGCAGGTGGACAGCATATTGGCGCTACTAACGCGCCAATTG
TCCGTGGACGAGCTGGCCGAGGAGTACACCTTCGCCCTGGAGCGATCCGT
GCAGAACGAGTGTTACTAGCTTTAGATCCATAGATCCACTGGTTAATATT
CATACATTACATTACATTACATATAATAAAACGTTGCTTATTTAATTGTA
AACCACATATGCAGTGCTCTTTTGCTTGTTAGTGGTGTGAGTCATTGGAA
TTCCTTAATCTTGTTGCCATACAATTAATGTTCCATTTCTTTGAAAACAT
GTAGAACTTTTCTGACTATCAAGTAGTCCTTTGGTTTTACCTCGCTCACA
TTTCAACTGGGACTGCTCATAAGGTGATCCACTATCGCAGCGTGAATACA
TAAAATTGTTAGTGCTCCCGTTTACCCAAATTTTTCGTACACAAAAAAGA
TTTCGAAACATTATTTTGTGTTTATAAGTAACCAAGTTCAAAGCTAAATT
TCCAATACGTACAAATTTACCAAGCCGAGACGAGCCGTTCCGTTTCGTTT
CGTTTAGTTCAGTTCCGTGTAGTACTCTTCAGCCATGGCCAGCTCCAATG
TCTCGGATTGGGATGAGCCGATGCCCACGTCGACGGAGTCGCTGCCCGAG
GAGGAGGATCCGGATGTGTGCGCAGAGGAGAACGTAAAGAAGCGGCGGGA
GGAGGAACTGGACAAGCTGGAGTTGTATGTGCGGCGCATGGCCTACCAGC
CGACACTGCCGCCCAAGGTAAAGCCCTACGACGTGGCCCTGTCCAAGCCC
AAGTTGCACACGCTCATCGACAACTACGAGCAGTTCAAGGATGTATACGA
TCCGAAGCTGCGGGCCAAGCGGATCAAGCGCATGCTGGGCAAATACAAAG
CCATTACCACGGAACAGCTGGAGCAGATCCTTAAGAGCAACAAGACCAAG
GAGCGAAAGAAGGAGGATTTCCTGAAGCGCAAGCAGGAACTGTACTACAA
CATGCTGACCAAGCTGGAGCGCCAGTGCCGCACCCAGTACCTGAACGTGC
TCATCAAGAAGTTCGCCAAATTCATTTCCCATCTGGCCACAACGATGCGC
ATTCCGCCGCAGCTGGTGGATCCGTATGCGCGCATGCAGCGCGGCATCTT
CTGCAACATCCTGTTGGCCATTGGTGTGCAGCCCACCTCACAGTCGGCCA
TCTACTACACCAGCCAGGATGCCATCGAGTACGATGTGTGCCATCGCCTC
GCGCACGCGCTGCTCAGTTTGATCATTAAGGCGCTGGACTCGGCAGCCAC
AAGGGATCCCAACGAGCTGGCCAAGCCGGCCGACTTGGACTTCGAGATGG
ACAATCACATCAAGCGTCGGCTCATGTGCGCCGCCGAGAAGAAGCTGCTG
TACGAGCGCCGTCGCAAGAAGCCCCAGCCGCAGGGTCTTGGAGCCTTTGA
GAAGTGCACCCGCTATGACTGCGACTAGGACGGCTCCTTCAGTGTATTCG
TGTTAACATTTGGCTACTATTTATTCGCATAAGAAGTCTTGCTCACATGG
TCAAAAAAAAAAAAAAAAAAAAAA

GH18658.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:35:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG15892-RB 1947 CG15892-RB 44..1946 1..1903 9515 100 Plus
CG15891-RA 1947 CG15891-RA 44..1946 1..1903 9515 100 Plus
CG15892-RA 1175 CG15892-RA 1..1174 730..1903 5870 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6185995..6187252 1263..1 6205 99.6 Minus
chrX 22417052 chrX 6185291..6185929 1902..1264 3195 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:58:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6293810..6295072 1263..1 6315 100 Minus
X 23542271 X 6293105..6293744 1903..1264 3200 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6301908..6303170 1263..1 6315 100 Minus
X 23527363 X 6301203..6301842 1903..1264 3200 100 Minus
Blast to na_te.dros performed on 2019-03-15 19:25:59 has no hits.

GH18658.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:27:05 Download gff for GH18658.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6185291..6185929 1264..1902 100 <- Minus
chrX 6185995..6187252 1..1263 95   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:48:27 Download gff for GH18658.complete
Subject Subject Range Query Range Percent Splice Strand
CG15892-RB 1..894 935..1828 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:25:33 Download gff for GH18658.complete
Subject Subject Range Query Range Percent Splice Strand
CG15892-RB 1..894 935..1828 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:51:16 Download gff for GH18658.complete
Subject Subject Range Query Range Percent Splice Strand
CG15892-RA 1..894 935..1828 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:58:32 Download gff for GH18658.complete
Subject Subject Range Query Range Percent Splice Strand
CG15892-RB 1..894 935..1828 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:18:10 Download gff for GH18658.complete
Subject Subject Range Query Range Percent Splice Strand
CG15892-RA 1..894 935..1828 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:24:07 Download gff for GH18658.complete
Subject Subject Range Query Range Percent Splice Strand
CG15891-RA 44..1945 1..1902 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:25:33 Download gff for GH18658.complete
Subject Subject Range Query Range Percent Splice Strand
CG15892-RB 44..1945 1..1902 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:51:16 Download gff for GH18658.complete
Subject Subject Range Query Range Percent Splice Strand
CG15892-RA 1..1173 730..1902 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:58:33 Download gff for GH18658.complete
Subject Subject Range Query Range Percent Splice Strand
CG15891-RA 44..1945 1..1902 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:18:10 Download gff for GH18658.complete
Subject Subject Range Query Range Percent Splice Strand
CG15892-RA 1..1173 730..1902 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:27:05 Download gff for GH18658.complete
Subject Subject Range Query Range Percent Splice Strand
X 6293106..6293744 1264..1902 100 <- Minus
X 6293810..6295072 1..1263 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:27:05 Download gff for GH18658.complete
Subject Subject Range Query Range Percent Splice Strand
X 6293106..6293744 1264..1902 100 <- Minus
X 6293810..6295072 1..1263 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:27:05 Download gff for GH18658.complete
Subject Subject Range Query Range Percent Splice Strand
X 6293106..6293744 1264..1902 100 <- Minus
X 6293810..6295072 1..1263 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:51:16 Download gff for GH18658.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6187139..6187777 1264..1902 100 <- Minus
arm_X 6187843..6189105 1..1263 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:36:22 Download gff for GH18658.complete
Subject Subject Range Query Range Percent Splice Strand
X 6301204..6301842 1264..1902 100 <- Minus
X 6301908..6303170 1..1263 100   Minus

GH18658.pep Sequence

Translation from 934 to 1827

> GH18658.pep
MASSNVSDWDEPMPTSTESLPEEEDPDVCAEENVKKRREEELDKLELYVR
RMAYQPTLPPKVKPYDVALSKPKLHTLIDNYEQFKDVYDPKLRAKRIKRM
LGKYKAITTEQLEQILKSNKTKERKKEDFLKRKQELYYNMLTKLERQCRT
QYLNVLIKKFAKFISHLATTMRIPPQLVDPYARMQRGIFCNILLAIGVQP
TSQSAIYYTSQDAIEYDVCHRLAHALLSLIIKALDSAATRDPNELAKPAD
LDFEMDNHIKRRLMCAAEKKLLYERRRKKPQPQGLGAFEKCTRYDCD*

GH18658.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:44:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21020-PA 297 GF21020-PA 1..297 1..297 1488 92.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:44:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17680-PA 297 GG17680-PA 1..297 1..297 1513 94.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24156-PA 300 GH24156-PA 1..300 1..297 1160 76.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG15892-PA 297 CG15892-PA 1..297 1..297 1547 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15527-PA 298 GI15527-PA 1..298 1..297 1248 78.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14182-PA 267 GL14182-PA 1..266 1..296 1059 69 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22387-PA 298 GA22387-PA 1..297 1..296 1267 79.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12580-PA 299 GM12580-PA 1..299 1..297 1227 79.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16198-PA 297 GD16198-PA 1..297 1..297 1553 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14730-PA 298 GJ14730-PA 1..298 1..297 1223 79.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19789-PA 301 GK19789-PA 1..301 1..297 1311 83.4 Plus

GH18658.hyp Sequence

Translation from 934 to 1827

> GH18658.hyp
MASSNVSDWDEPMPTSTESLPEEEDPDVCAEENVKKRREEELDKLELYVR
RMAYQPTLPPKVKPYDVALSKPKLHTLIDNYEQFKDVYDPKLRAKRIKRM
LGKYKAITTEQLEQILKSNKTKERKKEDFLKRKQELYYNMLTKLERQCRT
QYLNVLIKKFAKFISHLATTMRIPPQLVDPYARMQRGIFCNILLAIGVQP
TSQSAIYYTSQDAIEYDVCHRLAHALLSLIIKALDSAATRDPNELAKPAD
LDFEMDNHIKRRLMCAAEKKLLYERRRKKPQPQGLGAFEKCTRYDCD*

GH18658.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:00:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG15892-PA 297 CG15892-PA 1..297 1..297 1547 100 Plus