Clone GH18717 Report

Search the DGRC for GH18717

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:187
Well:17
Vector:pOT2
Associated Gene/TranscriptMlh1-RA
Protein status:GH18717.pep: validated not full length
Preliminary Size:2133
Sequenced Size:2068

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11482 2001-01-01 Release 2 assignment
CG11482 2001-11-08 Blastp of sequenced clone
Mlh1 2008-04-29 Release 5.5 accounting
Mlh1 2008-08-15 Release 5.9 accounting
Mlh1 2008-12-18 5.12 accounting

Clone Sequence Records

GH18717.complete Sequence

2068 bp (2068 high quality bases) assembled on 2001-11-08

GenBank Submission: AY069160

> GH18717.complete
GAATATTTGCAGCCTGGAGTCATCCGGAAGCTGGACGAGGTGGTGGTGAA
CCGCATAGCCGCCGGCGAGATTATTCAGCGACCCGCCAACGCCCTAAAAG
AGCTGCTCGAGAACAGTTTGGACGCCCAATCGACCCACATCCAGGTGCAG
GTGAAGGCCGGTGGGCTGAAGCTGCTTCAAATCCAGGACAATGGCACGGG
GATACGACGCGAGGATCTGGCCATCGTCTGCGAGCGGTTCACCACCTCCA
AGCTGACCCGCTTCGAGGATTTGTCCCAGATAGCAACATTTGGCTTCAGA
GGAGAGGCCTTGGCCAGCATTAGTCATGTGGCGCACCTAAGCATCCAGAC
CAAGACGGCTAAGGAGAAGTGCGGCTACAAGGCCACCTACGCGGATGGCA
AGCTCCAGGGTCAGCCGAAGCCGTGTGCCGGAAACCAAGGCACGATCATT
TGCATAGAGGATCTGTTCTACAACATGCCGCAAAGGAGGCAGGCACTCCG
TTCGCCGGCCGAGGAGTTCCAGAGATTGTCCGAGGTTCTGGCTAGGTACG
CTGTCCACAATCCAAGGGTGGGCTTCACTCTCCGCAAGCAGGGAGACGCG
CAACCTGCCCTGCGGACACCAGTGGCCAGTTCCCGATCCGAAAACATCCG
CATCATTTACGGGGCAGCAATTTCCAAGGAGCTGCTGGAGTTTAGCCACC
GCGATGAGGTTTACAAGTTCGAGGCCGAGTGTCTGATCACTCAGGTTAAC
TATTCGGCCAAAAAGTGTCAGATGCTGCTGTTCATCAACCAGCGACTGGT
GGAGTCCACAGCTCTCAGGACCTCCGTGGACTCGATTTATGCCACATACC
TGCCCCGTGGCCACCATCCTTTCGTATATATGAGCCTGACGCTGCCGCCA
CAGAACTTGGACGTGAATGTCCATCCCACCAAGCATGAGGTGCACTTTCT
CTACCAGGAAGAGATTGTGGATAGCATTAAGCAGCAGGTTGAAGCCCGAC
TCCTAGGCAGCAATGCCACGAGGACGTTCTACAAACAGCTAAGGCTACCA
GGAGCCCCCGACCTGGATGAAACCCAGTTGGCTGATAAAACGCAACGCAT
TTATCCCAAGGAGATGGTGCGTACTGACTCCACAGAGCAAAAGCTGGATA
AGTTTTTGGCGCCTCTGGTCAAAAGTGACTCAGGCGTATCCTCCAGTTCC
TCCCAGGAAGCGTCTCGTCTGCCAGAAGAGAGTTTTCGCGTTACAGCGGC
AAAAAAATCACGAGAAGTGCGTTTGAGCAGCGTGCTAGACATGAGGAAGC
GCGTGGAGCGGCAGTGCAGCGTTCAGCTGAGGAGCACGCTCAAAAACTTG
GTCTATGTGGGCTGTGTGGATGAGAGGCGAGCCCTGTTCCAGCATGAAAC
GCGCCTTTATATGTGCAACACACGGTCGTTTAGTGAGGAACTGTTCTATC
AGCGGATGATTTACGAGTTTCAAAACTGCTCGGAAATCACAATAAGTCCG
CCATTGCCTCTCAAGGAGCTGCTAATCTTGTCGCTGGAAAGCGAAGCCGC
CGGCTGGACGCCCGAAGACGGGGATAAGGCTGAGCTGGCGGACGGTGCTG
CGGACATTCTTCTGAAAAAGGCGCCCATCATGAGAGAGTATTTCGGGCTG
CGCATCTCGGAGGATGGAATGCTCGAATCTCTGCCCAGTTTGCTGCACCA
GCATCGACCTTGTGTGGCCCACCTGCCTGTTTACCTGCTCCGCTTGGCCA
CCGAAGTGGACTGGGAGCAGGAGACACGATGCTTCGAGACATTCTGTAGG
GAAACTGCTCGATTTTACGCGCAATTGGATTGGCGGGAAGGTGCGACTGC
GGGCTTTTCCAGATGGACAATGGAACACGTTCTATTTCCTGCCTTTAAAA
AATATCTTCTGCCACCACCACGCATCAAGGATCAGATCTACGAGCTCACT
AACCTGCCCACTCTGTACAAGGTGTTCGAGCGGTGCTAGTTTAGGTTGTT
CACTTCCAGAACTTTAAATATTGATTATATTTGGTATTCTAAACATAAAA
AAAAAAAAAAAAAAAAAA

GH18717.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
Mlh1-RA 2383 Mlh1-RA 308..2354 1..2047 10235 100 Plus
Mlh1.a 2307 Mlh1.a 264..2307 1..2047 10135 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:00:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4058699..4059935 810..2046 6170 99.9 Plus
chr2R 21145070 chr2R 4057833..4058643 1..811 4040 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:58:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:00:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8171165..8172402 810..2047 6190 100 Plus
2R 25286936 2R 8170299..8171109 1..811 4055 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8172364..8173601 810..2047 6190 100 Plus
2R 25260384 2R 8171498..8172308 1..811 4055 100 Plus
Blast to na_te.dros performed on 2019-03-16 06:00:01 has no hits.

GH18717.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:01:03 Download gff for GH18717.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4057833..4058643 1..811 99 -> Plus
chr2R 4058701..4059935 812..2046 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:48:29 Download gff for GH18717.complete
Subject Subject Range Query Range Percent Splice Strand
Mlh1-RA 7..1995 1..1989 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:34:31 Download gff for GH18717.complete
Subject Subject Range Query Range Percent Splice Strand
Mlh1-RA 7..1995 1..1989 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:03:50 Download gff for GH18717.complete
Subject Subject Range Query Range Percent Splice Strand
Mlh1-RA 7..1995 1..1989 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:02:04 Download gff for GH18717.complete
Subject Subject Range Query Range Percent Splice Strand
Mlh1-RA 7..1995 1..1989 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:10:34 Download gff for GH18717.complete
Subject Subject Range Query Range Percent Splice Strand
Mlh1-RA 7..1995 1..1989 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:14:07 Download gff for GH18717.complete
Subject Subject Range Query Range Percent Splice Strand
Mlh1-RA 264..2309 1..2046 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:34:30 Download gff for GH18717.complete
Subject Subject Range Query Range Percent Splice Strand
Mlh1-RA 264..2309 1..2046 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:50 Download gff for GH18717.complete
Subject Subject Range Query Range Percent Splice Strand
Mlh1-RA 26..2071 1..2046 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:02:04 Download gff for GH18717.complete
Subject Subject Range Query Range Percent Splice Strand
Mlh1-RA 264..2309 1..2046 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:10:34 Download gff for GH18717.complete
Subject Subject Range Query Range Percent Splice Strand
Mlh1-RA 26..2071 1..2046 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:01:03 Download gff for GH18717.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8170299..8171109 1..811 100 -> Plus
2R 8171167..8172401 812..2046 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:01:03 Download gff for GH18717.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8170299..8171109 1..811 100 -> Plus
2R 8171167..8172401 812..2046 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:01:03 Download gff for GH18717.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8170299..8171109 1..811 100 -> Plus
2R 8171167..8172401 812..2046 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:50 Download gff for GH18717.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4057804..4058614 1..811 100 -> Plus
arm_2R 4058672..4059906 812..2046 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:39:04 Download gff for GH18717.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8171498..8172308 1..811 100 -> Plus
2R 8172366..8173600 812..2046 100   Plus

GH18717.pep Sequence

Translation from 0 to 1988

> GH18717.pep
EYLQPGVIRKLDEVVVNRIAAGEIIQRPANALKELLENSLDAQSTHIQVQ
VKAGGLKLLQIQDNGTGIRREDLAIVCERFTTSKLTRFEDLSQIATFGFR
GEALASISHVAHLSIQTKTAKEKCGYKATYADGKLQGQPKPCAGNQGTII
CIEDLFYNMPQRRQALRSPAEEFQRLSEVLARYAVHNPRVGFTLRKQGDA
QPALRTPVASSRSENIRIIYGAAISKELLEFSHRDEVYKFEAECLITQVN
YSAKKCQMLLFINQRLVESTALRTSVDSIYATYLPRGHHPFVYMSLTLPP
QNLDVNVHPTKHEVHFLYQEEIVDSIKQQVEARLLGSNATRTFYKQLRLP
GAPDLDETQLADKTQRIYPKEMVRTDSTEQKLDKFLAPLVKSDSGVSSSS
SQEASRLPEESFRVTAAKKSREVRLSSVLDMRKRVERQCSVQLRSTLKNL
VYVGCVDERRALFQHETRLYMCNTRSFSEELFYQRMIYEFQNCSEITISP
PLPLKELLILSLESEAAGWTPEDGDKAELADGAADILLKKAPIMREYFGL
RISEDGMLESLPSLLHQHRPCVAHLPVYLLRLATEVDWEQETRCFETFCR
ETARFYAQLDWREGATAGFSRWTMEHVLFPAFKKYLLPPPRIKDQIYELT
NLPTLYKVFERC*

GH18717.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13669-PA 663 GF13669-PA 4..663 3..662 2973 82.9 Plus
Dana\GF11871-PA 919 GF11871-PA 24..374 6..314 341 27.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23342-PA 664 GG23342-PA 3..664 1..662 3302 93.4 Plus
Dere\GG22356-PA 888 GG22356-PA 25..375 6..314 317 25.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:28:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21079-PA 662 GH21079-PA 4..662 4..662 2610 73.9 Plus
Dgri\GH21651-PA 903 GH21651-PA 19..369 6..314 339 26.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
Mlh1-PA 664 CG11482-PA 3..664 1..662 3403 100 Plus
Mlh1-PB 663 CG11482-PB 3..663 1..662 3382 99.7 Plus
Pms2-PA 899 CG8169-PA 25..436 6..380 314 24.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18680-PA 659 GI18680-PA 2..659 3..662 2703 75.3 Plus
Dmoj\GI20104-PA 380 GI20104-PA 19..377 6..323 334 26.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11208-PA 675 GL11208-PA 5..675 3..662 2875 77.8 Plus
Dper\GL20044-PA 645 GL20044-PA 19..376 6..322 337 27.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11026-PA 675 GA11026-PA 5..675 3..662 2875 77.8 Plus
Dpse\GA20862-PA 881 GA20862-PA 19..376 6..322 338 27.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21014-PA 664 GM21014-PA 5..664 3..662 3465 97.4 Plus
Dsec\GM20141-PA 901 GM20141-PA 25..375 6..314 329 25.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10548-PA 664 GD10548-PA 5..664 3..662 3451 96.7 Plus
Dsim\GD25619-PA 713 GD25619-PA 25..375 6..314 333 26 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21695-PA 660 GJ21695-PA 1..660 3..662 2626 74.9 Plus
Dvir\GJ19872-PA 886 GJ19872-PA 17..376 4..322 333 27.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15817-PA 601 GK15817-PA 7..598 5..586 2417 75.7 Plus
Dwil\GK23208-PA 875 GK23208-PA 16..371 6..323 333 25.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19183-PA 664 GE19183-PA 3..664 1..662 3260 92.6 Plus
Dyak\GE14157-PA 899 GE14157-PA 25..375 6..314 327 25.6 Plus

GH18717.hyp Sequence

Translation from 0 to 1988

> GH18717.hyp
EYLQPGVIRKLDEVVVNRIAAGEIIQRPANALKELLENSLDAQSTHIQVQ
VKAGGLKLLQIQDNGTGIRREDLAIVCERFTTSKLTRFEDLSQIATFGFR
GEALASISHVAHLSIQTKTAKEKCGYKATYADGKLQGQPKPCAGNQGTII
CIEDLFYNMPQRRQALRSPAEEFQRLSEVLARYAVHNPRVGFTLRKQGDA
QPALRTPVASSRSENIRIIYGAAISKELLEFSHRDEVYKFEAECLITQVN
YSAKKCQMLLFINQRLVESTALRTSVDSIYATYLPRGHHPFVYMSLTLPP
QNLDVNVHPTKHEVHFLYQEEIVDSIKQQVEARLLGSNATRTFYKQLRLP
GAPDLDETQLADKTQRIYPKEMVRTDSTEQKLDKFLAPLVKSDSGVSSSS
SQEASRLPEESFRVTAAKKSREVRLSSVLDMRKRVERQCSVQLRSTLKNL
VYVGCVDERRALFQHETRLYMCNTRSFSEELFYQRMIYEFQNCSEITISP
PLPLKELLILSLESEAAGWTPEDGDKAELADGAADILLKKAPIMREYFGL
RISEDGMLESLPSLLHQHRPCVAHLPVYLLRLATEVDWEQETRCFETFCR
ETARFYAQLDWREGATAGFSRWTMEHVLFPAFKKYLLPPPRIKDQIYELT
NLPTLYKVFERC*

GH18717.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
Mlh1-PA 664 CG11482-PA 3..664 1..662 3403 100 Plus
Mlh1-PB 663 CG11482-PB 3..663 1..662 3382 99.7 Plus
Pms2-PA 899 CG8169-PA 25..436 6..380 314 24.1 Plus