Clone GH18858 Report

Search the DGRC for GH18858

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:188
Well:58
Vector:pOT2
Associated Gene/TranscriptCG14629-RA
Protein status:GH18858.pep: gold
Preliminary Size:1242
Sequenced Size:1114

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14629 2001-01-01 Release 2 assignment
CG14629 2001-10-10 Blastp of sequenced clone
CG14629 2003-01-01 Sim4 clustering to Release 3
CG14629 2008-04-29 Release 5.5 accounting
CG14629 2008-08-15 Release 5.9 accounting
CG14629 2008-12-18 5.12 accounting

Clone Sequence Records

GH18858.complete Sequence

1114 bp (1114 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060737

> GH18858.complete
AGAATGTCGAGCTGGTCGCTTTGTCCGCTTTTACTGGCCTTCGCGGTTCA
CGCCGTGCTTGGATCTGTGGATTTGGCTGGTTCCCTGGATCCGTCGCTGC
TGGAGAACGTGGATGTGGACCAGCTAAGGTCAAACTATCTGCCCCAAGGC
CTGCAAAACACCAATGTGACCTTGGCCGACTTCCAAAAGTGGCTGCAGTC
GAAGTGCGAGAAGGCCAATGACCATTTGCCGAAAGGATCTGTTAACGCCT
CTGCCCTGAGCAAGTCCATCGAGGATGCGGGCATTCACCTCGCAGAATGC
CTCTCCGGATTGGCCAATATGACGGAGATCCAGGCGGAGATCGAGGAGGC
GAGTCCCAAGGGCGACCTGGACGTGGTCTTCGAGAAGTATTGCCTCCGAT
TGCCGCAGGCCAAGACCTGTCTGAAGAACTTCAACGACGCGATCCTGCCC
TGCCTGACCACCGATGAGAAGACCCACAACGCGGTGCTGCAGAGGATTGC
GGACAAGCTGCTGGAGTTCATATGCTACAAGAACGGAGACCAGATTGCGC
TCTTTATCGCCGAAGAGGGCCCGGAGTGCCTGCAGCAGAGTCGCGAAGGC
ATCGCCAATTGCCTGAACTCTTCCTTCGCCGGATATCTGCCCAAGTCGAT
TAGCCCGGAGTGGGATCTGCCCCAGCTGGTCTTGGGTCCGAAGCAGTGCG
TCGACCTCTACGCATTCGAGACGTGCACCGTCAGTCTGCTGGAGAAGTGC
GATACGATCACTCCCAGCAATATCGTGGAGTCCATGTTTCGATACGTGAG
GAAGGAGTCCTCCTGCCAGCCCCACATCGACAGGGTCAAGCTGCAGCACC
GCAGAGCCCTGCCCTTGACCAGTGGATCCCAGTCCGGCTCATCCGTATCC
CTTCATCTCACCTGGACCTCTGCGAGCCTGCTAATGGCCACTTTCCTCGC
CCGACTGGCCTAACATTCCCCGCTCTCTCTCTCTCTTTTTTTTTTGGTTG
ATATTTTATAATTATGTTTAATAAACTTTGCAAAGTCGGGAACGGAGTCT
GTGCACCGGACGGACGGACGGACTGCTGCCCGGCGTAAGCCGCTTAAAAA
AAAAAAAAAAAAAA

GH18858.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG14629-RA 1092 CG14629-RA 1..1092 1..1092 5460 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 945529..946623 1..1095 5430 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:58:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1051537..1052633 1..1097 5485 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1059635..1060731 1..1097 5485 100 Plus
Blast to na_te.dros performed on 2019-03-16 17:41:31 has no hits.

GH18858.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:42:44 Download gff for GH18858.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 945529..946623 1..1095 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:48:32 Download gff for GH18858.complete
Subject Subject Range Query Range Percent Splice Strand
CG14629-RA 1..960 4..963 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:51:38 Download gff for GH18858.complete
Subject Subject Range Query Range Percent Splice Strand
CG14629-RA 1..960 4..963 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:59:35 Download gff for GH18858.complete
Subject Subject Range Query Range Percent Splice Strand
CG14629-RA 1..960 4..963 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:20:46 Download gff for GH18858.complete
Subject Subject Range Query Range Percent Splice Strand
CG14629-RA 1..960 4..963 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:04:17 Download gff for GH18858.complete
Subject Subject Range Query Range Percent Splice Strand
CG14629-RA 1..960 4..963 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:36:33 Download gff for GH18858.complete
Subject Subject Range Query Range Percent Splice Strand
CG14629-RA 1..1092 1..1092 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:51:38 Download gff for GH18858.complete
Subject Subject Range Query Range Percent Splice Strand
CG14629-RA 1..1092 1..1092 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:59:35 Download gff for GH18858.complete
Subject Subject Range Query Range Percent Splice Strand
CG14629-RA 13..1107 1..1095 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:20:46 Download gff for GH18858.complete
Subject Subject Range Query Range Percent Splice Strand
CG14629-RA 1..1092 1..1092 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:04:17 Download gff for GH18858.complete
Subject Subject Range Query Range Percent Splice Strand
CG14629-RA 13..1107 1..1095 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:42:44 Download gff for GH18858.complete
Subject Subject Range Query Range Percent Splice Strand
X 1051537..1052631 1..1095 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:42:44 Download gff for GH18858.complete
Subject Subject Range Query Range Percent Splice Strand
X 1051537..1052631 1..1095 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:42:44 Download gff for GH18858.complete
Subject Subject Range Query Range Percent Splice Strand
X 1051537..1052631 1..1095 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:59:35 Download gff for GH18858.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 945570..946664 1..1095 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:57:27 Download gff for GH18858.complete
Subject Subject Range Query Range Percent Splice Strand
X 1059635..1060729 1..1095 100   Plus

GH18858.hyp Sequence

Translation from 0 to 962

> GH18858.hyp
RMSSWSLCPLLLAFAVHAVLGSVDLAGSLDPSLLENVDVDQLRSNYLPQG
LQNTNVTLADFQKWLQSKCEKANDHLPKGSVNASALSKSIEDAGIHLAEC
LSGLANMTEIQAEIEEASPKGDLDVVFEKYCLRLPQAKTCLKNFNDAILP
CLTTDEKTHNAVLQRIADKLLEFICYKNGDQIALFIAEEGPECLQQSREG
IANCLNSSFAGYLPKSISPEWDLPQLVLGPKQCVDLYAFETCTVSLLEKC
DTITPSNIVESMFRYVRKESSCQPHIDRVKLQHRRALPLTSGSQSGSSVS
LHLTWTSASLLMATFLARLA*

GH18858.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14629-PA 319 CG14629-PA 1..319 2..320 1652 100 Plus
CG11378-PC 312 CG11378-PC 13..308 18..316 571 40.2 Plus
CG11378-PB 312 CG11378-PB 13..308 18..316 571 40.2 Plus
CG11378-PA 312 CG11378-PA 13..308 18..316 571 40.2 Plus
CG9917-PB 301 CG9917-PB 23..290 33..312 518 37.7 Plus

GH18858.pep Sequence

Translation from 3 to 962

> GH18858.pep
MSSWSLCPLLLAFAVHAVLGSVDLAGSLDPSLLENVDVDQLRSNYLPQGL
QNTNVTLADFQKWLQSKCEKANDHLPKGSVNASALSKSIEDAGIHLAECL
SGLANMTEIQAEIEEASPKGDLDVVFEKYCLRLPQAKTCLKNFNDAILPC
LTTDEKTHNAVLQRIADKLLEFICYKNGDQIALFIAEEGPECLQQSREGI
ANCLNSSFAGYLPKSISPEWDLPQLVLGPKQCVDLYAFETCTVSLLEKCD
TITPSNIVESMFRYVRKESSCQPHIDRVKLQHRRALPLTSGSQSGSSVSL
HLTWTSASLLMATFLARLA*

GH18858.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22129-PA 323 GF22129-PA 1..322 1..318 997 60.1 Plus
Dana\GF22134-PA 321 GF22134-PA 1..314 1..318 622 39.8 Plus
Dana\GF19082-PA 323 GF19082-PA 58..269 80..293 474 41.5 Plus
Dana\GF22135-PA 239 GF22135-PA 62..211 121..272 190 33.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12829-PA 322 GG12829-PA 1..322 1..319 1400 85.4 Plus
Dere\GG12830-PA 309 GG12830-PA 31..305 28..315 558 40 Plus
Dere\GG19331-PA 302 GG19331-PA 22..291 30..311 513 35.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11994-PA 322 GH11994-PA 41..317 37..319 796 52.8 Plus
Dgri\GH11997-PA 312 GH11997-PA 21..270 23..276 601 43.4 Plus
Dgri\GH12279-PA 301 GH12279-PA 27..274 33..294 469 36 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG14629-PA 319 CG14629-PA 1..319 1..319 1652 100 Plus
CG11378-PC 312 CG11378-PC 13..308 17..315 571 40.2 Plus
CG11378-PB 312 CG11378-PB 13..308 17..315 571 40.2 Plus
CG11378-PA 312 CG11378-PA 13..308 17..315 571 40.2 Plus
CG9917-PB 301 CG9917-PB 23..290 32..311 518 37.7 Plus
CG9917-PA 301 CG9917-PA 23..290 32..311 518 37.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15617-PA 322 GI15617-PA 42..298 37..292 806 57.6 Plus
Dmoj\GI15624-PA 312 GI15624-PA 21..291 23..299 595 41.2 Plus
Dmoj\GI10977-PA 300 GI10977-PA 11..262 8..274 458 37.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14224-PA 323 GL14224-PA 15..312 10..305 927 60.5 Plus
Dper\GL21344-PA 192 GL21344-PA 7..187 8..200 327 36.8 Plus
Dper\GL14229-PA 146 GL14229-PA 6..143 10..147 256 37.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13127-PA 323 GA13127-PA 15..312 10..305 927 60.5 Plus
Dpse\GA10959-PA 319 GA10959-PA 6..303 10..305 606 39.5 Plus
Dpse\GA22121-PA 303 GA22121-PA 7..277 8..296 497 36.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19113-PA 317 GM19113-PA 1..317 1..319 1629 96.9 Plus
Dsec\GM19115-PA 312 GM19115-PA 34..308 28..315 580 41.7 Plus
Dsec\GM13409-PA 301 GM13409-PA 22..290 31..311 516 37.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16543-PA 317 GD16543-PA 1..317 1..319 1629 96.9 Plus
Dsim\GD16544-PA 312 GD16544-PA 34..308 28..315 580 41.7 Plus
Dsim\GD15756-PA 301 GD15756-PA 22..290 31..311 504 36.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15221-PA 312 GJ15221-PA 33..303 33..302 796 53.1 Plus
Dvir\GJ16336-PA 314 GJ16336-PA 21..309 23..316 594 40.5 Plus
Dvir\GJ19442-PA 300 GJ19442-PA 5..294 14..319 519 37.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16357-PA 317 GK16357-PA 48..315 37..308 885 58.2 Plus
Dwil\GK16360-PA 312 GK16360-PA 5..307 9..316 615 41.3 Plus
Dwil\GK10066-PA 249 GK10066-PA 23..246 46..271 480 41 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16661-PA 322 GE16661-PA 1..319 1..317 1429 87.1 Plus
Dyak\GE16663-PA 307 GE16663-PA 36..303 28..315 523 39.3 Plus
Dyak\GE15978-PA 302 GE15978-PA 22..262 31..274 481 37.7 Plus