Clone GH18921 Report

Search the DGRC for GH18921

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:189
Well:21
Vector:pOT2
Associated Gene/TranscriptCG5862-RA
Protein status:GH18921.pep: gold
Preliminary Size:1172
Sequenced Size:1073

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5862 2001-01-01 Release 2 assignment
CG5862 2001-10-10 Blastp of sequenced clone
CG5862 2003-01-01 Sim4 clustering to Release 3
CG5862 2008-04-29 Release 5.5 accounting
CG5862 2008-08-15 Release 5.9 accounting
CG5862 2008-12-18 5.12 accounting

Clone Sequence Records

GH18921.complete Sequence

1073 bp (1073 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060740

> GH18921.complete
AAAGCATTGCGTGCACCAGGCTAGGAAGCCTCCCAACGTATTCGCAATGG
ATCTGATCATTCTCGTGGGGATTGCCGTAGCTCTTTTAGTTGTGATCGTC
ACACTGTACCTGCTGCAAAAGAAAAACGCCGCCCCAGAAACCAAGGTAGC
TGCAGCTCCTCAACGTGGCGTTCCACAGCGCGCCCAGGAGGGTGTTCCGC
GTCGGGCTCAAATAGCTCGAAATCAGCGCAATCGACTGCGCCAGAATGTT
CCAGCGGCTCCAGTCGCCGCGGCAGCTGGTGCTCTTCCGGCTGCCGGCGA
CTCTGACCACGAGGACGAGGGTCAGGTCGATGGTGATGAGGCACGTGTGC
CCCAGGGAGCGGTGCTGGATGAGAAAATGGGTGCTAAGAAGCGTGCCAAG
ATGGAGGCCAAGGAGCAGAAGCGGCTTCAGCGGGAGCAGGAACTGCACGA
TCGCGAACAGCGCAAGGTGAAGGAGGCGAAGGAGGAGGCGGAGCGCAAGC
AGCAAGAAGACCTTGAGGCAGAGGCCGAGCGCAAGCGGGTGGATGCCGAG
CGCCTGGCCAAAGAGGAACGGGAGCGCAAGGAGCACGAGGAGTACCTGAA
GATGAAGGCTGCCTTCAGTGTGGAGGAAGAGGGCTTCGAAGAGGGCGACG
CCGACGACCAGGACAACCTCCTGGCCGACTTCATTCAGTACATTAGGGAC
AACAAGGTGGTGGTCCTAGAGGATCTGGCCGTGGCCTTCAAATTAAAGAC
GCAGCAGGTCATTGATCGCATCCAGAACCTGCAGGCCGATGGCACCCTCA
CCGGCGTCATAGACGACCGCGGCAAGTTCATCTATGTTTCCGAGAAGGAG
CTATTGGCCGTGGCCAAGTTCATAAAACAACGCGGACGCGTCTCCATCGC
CGAGCTGGCCGAGAGCAGCAACAACCTGATTAACCTGACGCCCATTTCTG
CCGGCGGCGGCGAAGCCAGCTCCTGATGAGATTTGTTAGCCATTTGTATA
TTAAATTTATATTTAGATGCGATGTGTTGGTAGAGTAACAAGAACAAAAC
AATTCAAAAAAAAAAAAAAAAAA

GH18921.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5862.b 1728 CG5862.b 69..1125 1..1057 5285 100 Plus
CG5862-RA 1382 CG5862-RA 140..1196 1..1057 5285 100 Plus
CG5862.a 1474 CG5862.a 69..1125 1..1057 5285 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 17039117..17040037 135..1055 4560 99.7 Plus
chr3R 27901430 chr3R 17038925..17039061 1..137 685 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:58:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21215306..21216228 135..1057 4615 100 Plus
3R 32079331 3R 21215114..21215250 1..137 685 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 20956137..20957059 135..1057 4615 100 Plus
3R 31820162 3R 20955945..20956081 1..137 685 100 Plus
Blast to na_te.dros performed on 2019-03-15 13:02:59 has no hits.

GH18921.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:03:56 Download gff for GH18921.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 17038925..17039061 1..137 100 -> Plus
chr3R 17039120..17040037 138..1055 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:48:35 Download gff for GH18921.complete
Subject Subject Range Query Range Percent Splice Strand
CG5862-RA 1..930 47..976 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:51:39 Download gff for GH18921.complete
Subject Subject Range Query Range Percent Splice Strand
CG5862-RA 1..930 47..976 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:56:14 Download gff for GH18921.complete
Subject Subject Range Query Range Percent Splice Strand
CG5862-RA 1..930 47..976 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:20:49 Download gff for GH18921.complete
Subject Subject Range Query Range Percent Splice Strand
CG5862-RA 1..930 47..976 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:19:52 Download gff for GH18921.complete
Subject Subject Range Query Range Percent Splice Strand
CG5862-RA 1..930 47..976 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:36:35 Download gff for GH18921.complete
Subject Subject Range Query Range Percent Splice Strand
CG5862-RA 43..1097 1..1055 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:51:39 Download gff for GH18921.complete
Subject Subject Range Query Range Percent Splice Strand
CG5862-RA 55..1109 1..1055 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:56:14 Download gff for GH18921.complete
Subject Subject Range Query Range Percent Splice Strand
CG5862-RA 36..1090 1..1055 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:20:49 Download gff for GH18921.complete
Subject Subject Range Query Range Percent Splice Strand
CG5862-RA 43..1097 1..1055 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:19:52 Download gff for GH18921.complete
Subject Subject Range Query Range Percent Splice Strand
CG5862-RA 36..1090 1..1055 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:03:56 Download gff for GH18921.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21215114..21215250 1..137 100 -> Plus
3R 21215309..21216226 138..1055 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:03:56 Download gff for GH18921.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21215114..21215250 1..137 100 -> Plus
3R 21215309..21216226 138..1055 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:03:56 Download gff for GH18921.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21215114..21215250 1..137 100 -> Plus
3R 21215309..21216226 138..1055 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:56:14 Download gff for GH18921.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17040836..17040972 1..137 100 -> Plus
arm_3R 17041031..17041948 138..1055 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:57:29 Download gff for GH18921.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20956140..20957057 138..1055 100   Plus
3R 20955945..20956081 1..137 100 -> Plus

GH18921.hyp Sequence

Translation from 0 to 975

> GH18921.hyp
KHCVHQARKPPNVFAMDLIILVGIAVALLVVIVTLYLLQKKNAAPETKVA
AAPQRGVPQRAQEGVPRRAQIARNQRNRLRQNVPAAPVAAAAGALPAAGD
SDHEDEGQVDGDEARVPQGAVLDEKMGAKKRAKMEAKEQKRLQREQELHD
REQRKVKEAKEEAERKQQEDLEAEAERKRVDAERLAKEERERKEHEEYLK
MKAAFSVEEEGFEEGDADDQDNLLADFIQYIRDNKVVVLEDLAVAFKLKT
QQVIDRIQNLQADGTLTGVIDDRGKFIYVSEKELLAVAKFIKQRGRVSIA
ELAESSNNLINLTPISAGGGEASS*

GH18921.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5862-PA 309 CG5862-PA 1..309 16..324 1516 100 Plus

GH18921.pep Sequence

Translation from 46 to 975

> GH18921.pep
MDLIILVGIAVALLVVIVTLYLLQKKNAAPETKVAAAPQRGVPQRAQEGV
PRRAQIARNQRNRLRQNVPAAPVAAAAGALPAAGDSDHEDEGQVDGDEAR
VPQGAVLDEKMGAKKRAKMEAKEQKRLQREQELHDREQRKVKEAKEEAER
KQQEDLEAEAERKRVDAERLAKEERERKEHEEYLKMKAAFSVEEEGFEEG
DADDQDNLLADFIQYIRDNKVVVLEDLAVAFKLKTQQVIDRIQNLQADGT
LTGVIDDRGKFIYVSEKELLAVAKFIKQRGRVSIAELAESSNNLINLTPI
SAGGGEASS*

GH18921.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23066-PA 304 GF23066-PA 1..303 1..305 1137 83.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24454-PA 312 GG24454-PA 1..312 1..309 1345 92.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19408-PA 303 GH19408-PA 1..303 1..307 992 76.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5862-PA 309 CG5862-PA 1..309 1..309 1516 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22611-PA 310 GI22611-PA 1..307 1..305 1139 80.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12371-PA 309 GL12371-PA 1..309 1..309 1151 82.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19186-PA 309 GA19186-PA 1..309 1..309 1151 82.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15076-PA 223 GM15076-PA 1..216 1..216 1057 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19406-PA 293 GD19406-PA 1..276 1..276 1344 96.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23857-PA 307 GJ23857-PA 1..307 1..307 1079 80.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14514-PA 307 GK14514-PA 1..307 1..307 1038 79.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25716-PA 312 GE25716-PA 1..312 1..309 1321 91.3 Plus