Clone GH19029 Report

Search the DGRC for GH19029

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:190
Well:29
Vector:pOT2
Associated Gene/TranscriptCG5287-RA
Protein status:GH19029.pep: gold
Preliminary Size:1741
Sequenced Size:1579

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5287 2001-01-01 Release 2 assignment
CG5287 2001-07-04 Blastp of sequenced clone
CG5287 2008-04-29 Release 5.5 accounting
CG5287 2008-08-15 Release 5.9 accounting
CG5287 2008-12-18 5.12 accounting

Clone Sequence Records

GH19029.complete Sequence

1579 bp (1579 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051538

> GH19029.complete
AACAGCTGAGTTTGTTGTTATCAGCAATTTGAGTTTCAATTGCGTGTACT
TTTTTTTGTCGGCGTAATTGATTTCTGCACCATGATCGAGTGATCGGCTG
GTTTTCCGCGGCCTCCCACTATCCCAATTGAAACAGCGCACTCCGTACGC
GTGACTCCGGCAAATTTGCTGCGCACAGAGCTGCACCAGCTAATTGAATT
AGTGCAGCGGAAGGTGGATTTTCAAGGCCGACCATGTCGGGAGTCGCCAT
AGCCATCAATGCGGCCATTTCGGGCGCCGCCTACTGCATGACAGTCCGGA
TGATACCCCGCTTCCGCGAGATGTTCATCAAGGCCAATCTCTTTGGCAAC
GATCTGTGCAAGAAGGACAAGCCGCAGGTACCTGAATCCTTTGGTGTGCT
TATTGGCTGTGTGTTCCTGGTGTCCTTGTTTCTGTTCATACCGATTCCCT
TCGCCTTCGACGAGGCAGCTGCCACGGATGCGATTACTGGAGGCAAACCA
GATACCTTTCCACATGATAAGTTCGTGGAATTGATTGCCGCCCTTCTTTC
CATTTGCTGCATGATCTTCTTGGGCTTCGCCGATGACGTTCTCGACCTGC
GATGGCGCCACAAGCTCCTGTTGCCCACCATCGCCACGTTGCCGCTGCTA
ATGGTGTACTACGTAAACTATAACTCCACGACGGTCATTATGCCCAACTT
TGCAAGGAATCTGATTGGGACCTCCTTGAATATAGGTGCCTTGTACTACG
TCTTCATGGGCATGTTGGCGGTATTCTGCACAAATGCCATCAACATCCTG
GCGGGCATCAATGGCCTGGAGGTGGGACAATCCTTTATTATTGCAGGCTC
CATTCTGGTCTTCAATGCCATTGAACTGTTGCTCGGTCACCAGGTGGATT
CGCATATATTCTCCATTTACTTCATGCTGCCTTTCCTGGCCACCACCCTA
GCGCTATGGAAGTTCAACAAATATCCATCGCAGGTGTTTGTTGGGGACAC
CTACTGCTACTTTGCCGGCATGACTTTCGCCGTGGTTGGAATCCTGGGCC
ACTTCAGCAAGACGCTGCTGCTCTTCTTCCTGCCGCAGATCCTGAATTTC
CTGTACTCCACGCCGCAGCTGTTCCACTTTGTGCCATGTCCGCGTCACCG
GCTGCCCAAGTACGACAGCAAGACGGATCTGCTCCACATCAGCACCACGG
AGTTTCGCCTGGAGGATCTCAACGCTCCGGGTCGCCTGATGGTCACAGTA
CTGCGGAACTTGCGACTAATAAGCTGGCATACCAAAGCGGACGGAGTTGT
TAGGACCAACAACTTTACGCTCATTAACTTTGTCCTAGTCGTTTTCGGAC
CTGTCCACGAGCGAGTGGTCACCCAGATGCTGATGGGATTCCAGGTGCTG
TGTACACTGATTGCCCTGACCATACGATATCCACTGGCCAACTACTTCTA
TGCGAAAACGTAGCCCTCGATTTCATCATTCTTCGATTCTGATATTTATT
GTAGTAAGCCTTTGCTAAGTTAACTATACAAACAGAATACATTTATTTAA
TGCCTACACAAAAAAAAAAAAAAAAAAAA

GH19029.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5287-RA 1562 CG5287-RA 1..1562 1..1562 7810 100 Plus
CG5458-RA 1269 CG5458-RA 1..50 1514..1563 250 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13181588..13182176 971..1559 2945 100 Plus
chr2L 23010047 chr2L 13177932..13178310 1..379 1895 100 Plus
chr2L 23010047 chr2L 13178846..13179082 734..970 1170 99.6 Plus
chr2L 23010047 chr2L 13178572..13178789 520..737 1090 100 Plus
chr2L 23010047 chr2L 13178370..13178511 380..521 710 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:58:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13182907..13183499 971..1563 2965 100 Plus
2L 23513712 2L 13179245..13179623 1..379 1895 100 Plus
2L 23513712 2L 13180159..13180395 734..970 1185 100 Plus
2L 23513712 2L 13179885..13180102 520..737 1090 100 Plus
2L 23513712 2L 13179683..13179824 380..521 710 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13182907..13183499 971..1563 2965 100 Plus
2L 23513712 2L 13179245..13179623 1..379 1895 100 Plus
2L 23513712 2L 13180159..13180395 734..970 1185 100 Plus
2L 23513712 2L 13179885..13180102 520..737 1090 100 Plus
2L 23513712 2L 13179683..13179824 380..521 710 100 Plus
Blast to na_te.dros performed on 2019-03-16 12:43:38 has no hits.

GH19029.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:44:35 Download gff for GH19029.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13177932..13178310 1..379 100 -> Plus
chr2L 13178370..13178511 380..521 100 -> Plus
chr2L 13178574..13178787 522..735 100 -> Plus
chr2L 13178848..13179082 736..970 99 -> Plus
chr2L 13181588..13182176 971..1559 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:48:41 Download gff for GH19029.complete
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 1..1230 234..1463 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:25:25 Download gff for GH19029.complete
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 1..1230 234..1463 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:16:45 Download gff for GH19029.complete
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 1..1230 234..1463 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:58:25 Download gff for GH19029.complete
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 1..1230 234..1463 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:03 Download gff for GH19029.complete
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 1..1230 234..1463 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:23:56 Download gff for GH19029.complete
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 1..1559 1..1559 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:25:25 Download gff for GH19029.complete
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 1..1559 1..1559 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:16:45 Download gff for GH19029.complete
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 1..1557 3..1559 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:58:25 Download gff for GH19029.complete
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 1..1559 1..1559 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:03 Download gff for GH19029.complete
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 1..1557 3..1559 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:35 Download gff for GH19029.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13180161..13180395 736..970 100 -> Plus
2L 13179245..13179623 1..379 100 -> Plus
2L 13179683..13179824 380..521 100 -> Plus
2L 13179887..13180100 522..735 100 -> Plus
2L 13182907..13183495 971..1559 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:35 Download gff for GH19029.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13180161..13180395 736..970 100 -> Plus
2L 13179245..13179623 1..379 100 -> Plus
2L 13179683..13179824 380..521 100 -> Plus
2L 13179887..13180100 522..735 100 -> Plus
2L 13182907..13183495 971..1559 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:35 Download gff for GH19029.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13180161..13180395 736..970 100 -> Plus
2L 13179245..13179623 1..379 100 -> Plus
2L 13179683..13179824 380..521 100 -> Plus
2L 13179887..13180100 522..735 100 -> Plus
2L 13182907..13183495 971..1559 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:16:45 Download gff for GH19029.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13179245..13179623 1..379 100 -> Plus
arm_2L 13179683..13179824 380..521 100 -> Plus
arm_2L 13179887..13180100 522..735 100 -> Plus
arm_2L 13180161..13180395 736..970 100 -> Plus
arm_2L 13182907..13183495 971..1559 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:36:14 Download gff for GH19029.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13180161..13180395 736..970 100 -> Plus
2L 13179245..13179623 1..379 100 -> Plus
2L 13179683..13179824 380..521 100 -> Plus
2L 13179887..13180100 522..735 100 -> Plus
2L 13182907..13183495 971..1559 100   Plus

GH19029.pep Sequence

Translation from 233 to 1462

> GH19029.pep
MSGVAIAINAAISGAAYCMTVRMIPRFREMFIKANLFGNDLCKKDKPQVP
ESFGVLIGCVFLVSLFLFIPIPFAFDEAAATDAITGGKPDTFPHDKFVEL
IAALLSICCMIFLGFADDVLDLRWRHKLLLPTIATLPLLMVYYVNYNSTT
VIMPNFARNLIGTSLNIGALYYVFMGMLAVFCTNAINILAGINGLEVGQS
FIIAGSILVFNAIELLLGHQVDSHIFSIYFMLPFLATTLALWKFNKYPSQ
VFVGDTYCYFAGMTFAVVGILGHFSKTLLLFFLPQILNFLYSTPQLFHFV
PCPRHRLPKYDSKTDLLHISTTEFRLEDLNAPGRLMVTVLRNLRLISWHT
KADGVVRTNNFTLINFVLVVFGPVHERVVTQMLMGFQVLCTLIALTIRYP
LANYFYAKT*

GH19029.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14223-PA 409 GF14223-PA 1..409 1..409 2000 90.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23818-PA 409 GG23818-PA 1..409 1..409 2093 97.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11394-PA 412 GH11394-PA 1..407 1..407 1849 84.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5287-PA 409 CG5287-PA 1..409 1..409 2126 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18098-PA 410 GI18098-PA 1..407 1..407 1832 84 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24744-PA 409 GL24744-PA 1..409 1..409 2004 91.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18787-PA 409 GA18787-PA 1..409 1..409 2006 91.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10202-PA 409 GM10202-PA 1..409 1..409 2128 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23869-PA 409 GD23869-PA 1..409 1..409 2112 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16886-PA 410 GJ16886-PA 1..407 1..407 1887 86.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23958-PA 412 GK23958-PA 1..410 1..409 1931 87.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18620-PA 409 GE18620-PA 1..409 1..409 2110 97.6 Plus

GH19029.hyp Sequence

Translation from 233 to 1462

> GH19029.hyp
MSGVAIAINAAISGAAYCMTVRMIPRFREMFIKANLFGNDLCKKDKPQVP
ESFGVLIGCVFLVSLFLFIPIPFAFDEAAATDAITGGKPDTFPHDKFVEL
IAALLSICCMIFLGFADDVLDLRWRHKLLLPTIATLPLLMVYYVNYNSTT
VIMPNFARNLIGTSLNIGALYYVFMGMLAVFCTNAINILAGINGLEVGQS
FIIAGSILVFNAIELLLGHQVDSHIFSIYFMLPFLATTLALWKFNKYPSQ
VFVGDTYCYFAGMTFAVVGILGHFSKTLLLFFLPQILNFLYSTPQLFHFV
PCPRHRLPKYDSKTDLLHISTTEFRLEDLNAPGRLMVTVLRNLRLISWHT
KADGVVRTNNFTLINFVLVVFGPVHERVVTQMLMGFQVLCTLIALTIRYP
LANYFYAKT*

GH19029.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5287-PA 409 CG5287-PA 1..409 1..409 2126 100 Plus