Clone GH19118 Report

Search the DGRC for GH19118

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:191
Well:18
Vector:pOT2
Associated Gene/TranscriptCG42825-RA
Protein status:GH19118.pep: gold
Preliminary Size:1747
Sequenced Size:1735

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6640 2001-01-01 Release 2 assignment
CG6640 2001-07-04 Blastp of sequenced clone
CG6640 2003-01-01 Sim4 clustering to Release 3
CG6640 2008-04-29 Release 5.5 accounting
CG6640 2008-08-15 Release 5.9 accounting
CG6640 2008-12-18 5.12 accounting

Clone Sequence Records

GH19118.complete Sequence

1735 bp (1735 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051541

> GH19118.complete
TTTGTCTTCGCAATAGAGTGAAATAGATATAAAGCGATCGGAAATTCAGA
ACGATAAGTTTGCCCCACCGCCGTTGGCCATGCAAAACGACAAGTATCCA
GCGCCAATAGGCTTTTATCCACCACAAGGACAGCCGGGATATCCACAACC
AGCGTCACAGCCAGGATACCCTCAGCCAGGGCAGCCGCAACACATCACAC
CGGCGGAGACATACGGACCACAACCACCGCCAATGCCACCGCGGGATCCA
CACACCAGAGTGGATCCACCAGGAGGATGCTTTCAGCGCAACCAAAAGAA
CAAACCTCAATCCAATGCTGTGGGCGCAGCTGGTCTCATCTTTATCTCTG
GAGGTATGAACATAGCGTGGGCGATTGGCTTCCAAGGACCAATCTATTAC
CAAACCACCAAGCACAATTACATTGCCTGGTTCATAGGCGCCATTATTGG
AGCTTTGGTTACGATGGCGCTGACCAACAAGGTGGCCAAAAAATATATTC
TGCAATTTTCTTCAGTGTTGGTGACCGTCGGTGGATTGGTTATTGCCTGC
ACCCACAATAATGGAGCTGGAACCACGGCAGCTTGTTACCTAGATGGTAT
TGCCAATGGTCTGGTATTTGCCCCATTTATGGCGTTGGTCGGAGAGATCT
CGGTTCCCTATTTGAGGGGCAAGGCCAGTGCCACCTTGGAGCAATTGTGC
TTTGGAACCGGTATACTTCTTCAGATCCTTTATGTGTCAAATTGGACATA
TTCTTCGTATATGACATACAATGATTTTACGTCCGAGAATATGAAAGGAG
TGCTGAGCACAATCTACGGCGTTTTGGCCCTTATTATGGGCTCATTTTTT
ACCATCGAATCGCCGGTTCTAATGCTGGCCAATAACGAAGAACAGGCGGC
CATTGACGCACTGCGTCGGCTACAAAAGCCTGCGGTGCTAACCGAGGAAA
CTTACGAGCTTCTGGCGGAGCACAAACGCTACTTGGCCTACAACAAGAAT
ATGTCAAAGAGTGAAAGCATTTCCAAAGCGCTGCCCACCTTCATGCGACT
TGCATACCTGCGCGCCCTGAATGCTATGAGCATCTCCAGCTTTGTGATCA
TCACTTATGTCGTTGCGATCTTAGTCTCCAATGATTTAAGAAATGCGAGC
TCCTGGTACATAGGATTAGCCTTTTGCCGTTGGTTGGGATCCCTAATCCC
ATCCTTTTGCATGGAGTCCTTGGGCCGAAAGAAGCCTGCGGTCTTTGGCC
TGCTCGTAAGCTGCGGCTTGTCGTTTGCCGTGGGTTCACAGTACAATGTA
TATACGTATATGAGCCAAGTGACCGTCTTGATAATGATTTTCGAGTTCTT
TGCCGGTATGGCCTTCTCATCCAACTCGGCCTACCTGACGGAGGCATATC
CCATGGGAGTTAAGCAACACTTTATCGGTTTAACTTTCATCACCGAAATA
TTTGTCTTCCTCATCATAAATGTTTGTGACTTCAATTTTGGACAAGGCTA
CAACTACTTCTACATCATGGGAGCCATGTACCTGGCGGGAGTGATTCTCG
GAGTCCTTACACTGCCGGAGACAAGGAGGATGACCTTGCAAGGTGCCCAG
GAGCAGTTCAATAAATTCGTTAACTTCCGCTTTTAATGTTCAAAGGAATT
ATAGATTAATAAATCTACTATTAAAGTGCAAGAGGTCTAAGGCCTCTGTA
TTCCTCCACATAACGATAAAAAAAAAAAAAAAAAA

GH19118.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6640-RB 1860 CG6640-RB 112..1829 1..1718 8590 100 Plus
CG6640-RA 2839 CG6640-RA 1164..2833 49..1718 8350 100 Plus
CG32054-RA 2230 CG32054-RA 1005..1063 785..843 160 84.7 Plus
CG32054-RA 2230 CG32054-RA 1251..1325 1028..1102 150 80 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 10087428..10088643 1717..502 5930 99.2 Minus
chr3L 24539361 chr3L 10089443..10089771 329..1 1630 99.7 Minus
chr3L 24539361 chr3L 10088704..10088879 502..327 820 97.7 Minus
chr3L 24539361 chr3L 10085025..10085345 1102..785 280 73.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:58:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10095753..10096969 1718..502 6085 100 Minus
3L 28110227 3L 10097752..10098080 329..1 1645 100 Minus
3L 28110227 3L 10097030..10097205 502..327 880 100 Minus
3L 28110227 3L 10093369..10093689 1102..785 265 72.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 10088853..10090069 1718..502 6085 100 Minus
3L 28103327 3L 10090852..10091180 329..1 1645 100 Minus
3L 28103327 3L 10090130..10090305 502..327 880 100 Minus
3L 28103327 3L 10086868..10086997 706..577 170 75.3 Minus
3L 28103327 3L 10086731..10086789 843..785 160 84.7 Minus
3L 28103327 3L 10087186..10087313 454..327 160 75 Minus
3L 28103327 3L 10086469..10086543 1102..1028 150 80 Minus
Blast to na_te.dros performed on 2019-03-16 23:47:00 has no hits.

GH19118.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:47:57 Download gff for GH19118.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 10087428..10088642 503..1717 99 <- Minus
chr3L 10088704..10088876 330..502 97 <- Minus
chr3L 10089443..10089771 1..329 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:48:49 Download gff for GH19118.complete
Subject Subject Range Query Range Percent Splice Strand
CG6640-RA 1164..2751 49..1636 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:25:29 Download gff for GH19118.complete
Subject Subject Range Query Range Percent Splice Strand
CG42825-RA 1..1557 80..1636 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:49:59 Download gff for GH19118.complete
Subject Subject Range Query Range Percent Splice Strand
CG42825-RA 1..1557 80..1636 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:58:28 Download gff for GH19118.complete
Subject Subject Range Query Range Percent Splice Strand
CG6640-RA 1164..2751 49..1636 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:59:11 Download gff for GH19118.complete
Subject Subject Range Query Range Percent Splice Strand
CG42825-RA 1..1557 80..1636 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:24:02 Download gff for GH19118.complete
Subject Subject Range Query Range Percent Splice Strand
CG6640-RB 1..1717 1..1717 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:25:29 Download gff for GH19118.complete
Subject Subject Range Query Range Percent Splice Strand
CG42825-RA 1..1717 1..1717 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:59 Download gff for GH19118.complete
Subject Subject Range Query Range Percent Splice Strand
CG42825-RA 36..1752 1..1717 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:58:28 Download gff for GH19118.complete
Subject Subject Range Query Range Percent Splice Strand
CG6640-RB 1..1717 1..1717 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:59:11 Download gff for GH19118.complete
Subject Subject Range Query Range Percent Splice Strand
CG42825-RA 36..1752 1..1717 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:47:57 Download gff for GH19118.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10097752..10098080 1..329 100   Minus
3L 10095754..10096968 503..1717 100 <- Minus
3L 10097030..10097202 330..502 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:47:57 Download gff for GH19118.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10097752..10098080 1..329 100   Minus
3L 10095754..10096968 503..1717 100 <- Minus
3L 10097030..10097202 330..502 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:47:57 Download gff for GH19118.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10097752..10098080 1..329 100   Minus
3L 10095754..10096968 503..1717 100 <- Minus
3L 10097030..10097202 330..502 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:59 Download gff for GH19118.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10088854..10090068 503..1717 100 <- Minus
arm_3L 10090130..10090302 330..502 100 <- Minus
arm_3L 10090852..10091180 1..329 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:36:18 Download gff for GH19118.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10088854..10090068 503..1717 100 <- Minus
3L 10090130..10090302 330..502 100 <- Minus
3L 10090852..10091180 1..329 100   Minus

GH19118.pep Sequence

Translation from 79 to 1635

> GH19118.pep
MQNDKYPAPIGFYPPQGQPGYPQPASQPGYPQPGQPQHITPAETYGPQPP
PMPPRDPHTRVDPPGGCFQRNQKNKPQSNAVGAAGLIFISGGMNIAWAIG
FQGPIYYQTTKHNYIAWFIGAIIGALVTMALTNKVAKKYILQFSSVLVTV
GGLVIACTHNNGAGTTAACYLDGIANGLVFAPFMALVGEISVPYLRGKAS
ATLEQLCFGTGILLQILYVSNWTYSSYMTYNDFTSENMKGVLSTIYGVLA
LIMGSFFTIESPVLMLANNEEQAAIDALRRLQKPAVLTEETYELLAEHKR
YLAYNKNMSKSESISKALPTFMRLAYLRALNAMSISSFVIITYVVAILVS
NDLRNASSWYIGLAFCRWLGSLIPSFCMESLGRKKPAVFGLLVSCGLSFA
VGSQYNVYTYMSQVTVLIMIFEFFAGMAFSSNSAYLTEAYPMGVKQHFIG
LTFITEIFVFLIINVCDFNFGQGYNYFYIMGAMYLAGVILGVLTLPETRR
MTLQGAQEQFNKFVNFRF*

GH19118.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23844-PA 519 GF23844-PA 1..518 1..518 1469 57.7 Plus
Dana\GF23845-PA 553 GF23845-PA 1..553 1..518 1358 50.4 Plus
Dana\GF23846-PA 508 GF23846-PA 7..489 31..514 770 37.1 Plus
Dana\GF23843-PA 473 GF23843-PA 8..473 54..518 640 33.7 Plus
Dana\GF18489-PA 486 GF18489-PA 49..485 69..518 402 28.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13988-PA 571 GG13988-PA 32..571 13..518 1466 53.6 Plus
Dere\GG13987-PA 442 GG13987-PA 1..347 1..350 1456 81.5 Plus
Dere\GG13989-PA 496 GG13989-PA 2..492 27..514 684 35.1 Plus
Dere\GG13984-PA 473 GG13984-PA 7..473 48..518 629 34.1 Plus
Dere\GG16995-PA 490 GG16995-PA 26..488 50..517 420 27.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16561-PA 538 GH16561-PA 1..538 1..518 1180 47.5 Plus
Dgri\GH16562-PA 534 GH16562-PA 1..526 1..511 1030 43.6 Plus
Dgri\GH16563-PA 461 GH16563-PA 11..460 64..513 739 38.8 Plus
Dgri\GH16560-PA 479 GH16560-PA 14..479 48..518 704 34.6 Plus
Dgri\GH19546-PA 492 GH19546-PA 12..490 36..517 430 27.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG42825-PA 518 CG6640-PB 1..518 1..518 2711 100 Plus
CG32054-PA 563 CG32054-PA 1..563 1..518 1514 53.3 Plus
CG32053-PA 496 CG32053-PA 45..492 67..514 783 39 Plus
CG42826-PA 473 CG42826-PA 8..473 53..518 699 34.4 Plus
CG17930-PA 502 CG17930-PA 10..495 22..512 461 29.2 Plus
CG6901-PA 485 CG6901-PA 8..479 31..513 453 27.9 Plus
CG17929-PB 491 CG17929-PB 7..489 44..517 389 25.3 Plus
CG14160-PA 483 CG14160-PA 21..481 73..512 229 22.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13853-PA 569 GI13853-PA 32..569 9..518 1081 45.9 Plus
Dmoj\GI13854-PA 489 GI13854-PA 18..488 45..513 729 36.3 Plus
Dmoj\GI13851-PA 512 GI13851-PA 40..512 48..518 704 35.5 Plus
Dmoj\GI22946-PA 496 GI22946-PA 12..489 32..512 436 29 Plus
Dmoj\GI22944-PA 492 GI22944-PA 10..488 22..515 408 27.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:42:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11806-PA 537 GL11806-PA 1..537 1..518 1325 52.9 Plus
Dper\GL11795-PA 472 GL11795-PA 8..472 54..518 758 37.8 Plus
Dper\GL11817-PA 490 GL11817-PA 2..486 35..514 709 33.7 Plus
Dper\GL21598-PA 493 GL21598-PA 45..489 70..515 427 29.7 Plus
Dper\GL21599-PA 497 GL21599-PA 66..490 88..512 380 29.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23811-PA 561 GA23811-PA 1..561 1..518 1354 51.8 Plus
Dpse\GA23810-PA 472 GA23810-PA 8..472 54..518 748 37.6 Plus
Dpse\GA16641-PA 490 GA16641-PA 2..486 35..514 709 33.5 Plus
Dpse\GA26344-PA 499 GA26344-PA 51..495 70..515 427 29.9 Plus
Dpse\GA14732-PA 497 GA14732-PA 66..490 88..512 410 29.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24821-PA 916 GM24821-PA 399..916 1..518 2507 92.3 Plus
Dsec\GM24822-PA 553 GM24822-PA 1..553 1..518 1516 53.5 Plus
Dsec\GM24823-PA 496 GM24823-PA 2..492 27..514 764 36.7 Plus
Dsec\GM24821-PA 916 GM24821-PA 3..382 47..427 542 35.5 Plus
Dsec\GM15147-PA 490 GM15147-PA 10..488 31..517 445 28.3 Plus
Dsec\GM15149-PA 502 GM15149-PA 51..495 69..512 411 28.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12874-PA 562 GD12874-PA 1..562 1..518 1440 51.2 Plus
Dsim\GD12873-PA 720 GD12873-PA 536..720 334..518 863 87.6 Plus
Dsim\GD12875-PA 496 GD12875-PA 45..492 67..514 758 38.3 Plus
Dsim\GD12873-PA 720 GD12873-PA 399..536 1..138 662 93.5 Plus
Dsim\GD12873-PA 720 GD12873-PA 3..382 47..427 539 35.5 Plus
Dsim\GD19089-PA 491 GD19089-PA 11..489 31..517 453 27.8 Plus
Dsim\GD19091-PA 500 GD19091-PA 49..493 69..512 421 29.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11716-PA 562 GJ11716-PA 2..561 3..518 1238 47 Plus
Dvir\GJ11715-PA 485 GJ11715-PA 35..485 68..518 728 37 Plus
Dvir\GJ11717-PA 544 GJ11717-PA 118..543 87..513 640 36.6 Plus
Dvir\GJ23724-PA 493 GJ23724-PA 10..486 48..512 436 30 Plus
Dvir\GJ23723-PA 473 GJ23723-PA 29..466 74..512 395 28 Plus
Dvir\GJ11717-PA 544 GJ11717-PA 2..105 79..182 275 55.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24096-PA 536 GK24096-PA 86..529 61..511 1251 55 Plus
Dwil\GK24100-PA 477 GK24100-PA 9..464 67..514 738 37.8 Plus
Dwil\GK24094-PA 484 GK24094-PA 16..484 42..518 727 34.5 Plus
Dwil\GK21730-PA 532 GK21730-PA 83..525 71..512 383 27.5 Plus
Dwil\GK13773-PA 495 GK13773-PA 56..488 72..512 326 27.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20283-PA 925 GE20283-PA 417..925 14..518 2143 83.7 Plus
Dyak\GE20284-PA 573 GE20284-PA 1..573 1..518 1468 52 Plus
Dyak\GE20283-PA 925 GE20283-PA 33..388 72..427 494 35.2 Plus
Dyak\GE20285-PA 575 GE20285-PA 2..283 27..309 475 37.3 Plus
Dyak\GE24387-PA 490 GE24387-PA 11..488 31..517 435 27.6 Plus
Dyak\GE24390-PA 501 GE24390-PA 50..494 69..512 417 28.4 Plus
Dyak\GE20285-PA 575 GE20285-PA 298..571 245..514 350 31.8 Plus

GH19118.hyp Sequence

Translation from 79 to 1635

> GH19118.hyp
MQNDKYPAPIGFYPPQGQPGYPQPASQPGYPQPGQPQHITPAETYGPQPP
PMPPRDPHTRVDPPGGCFQRNQKNKPQSNAVGAAGLIFISGGMNIAWAIG
FQGPIYYQTTKHNYIAWFIGAIIGALVTMALTNKVAKKYILQFSSVLVTV
GGLVIACTHNNGAGTTAACYLDGIANGLVFAPFMALVGEISVPYLRGKAS
ATLEQLCFGTGILLQILYVSNWTYSSYMTYNDFTSENMKGVLSTIYGVLA
LIMGSFFTIESPVLMLANNEEQAAIDALRRLQKPAVLTEETYELLAEHKR
YLAYNKNMSKSESISKALPTFMRLAYLRALNAMSISSFVIITYVVAILVS
NDLRNASSWYIGLAFCRWLGSLIPSFCMESLGRKKPAVFGLLVSCGLSFA
VGSQYNVYTYMSQVTVLIMIFEFFAGMAFSSNSAYLTEAYPMGVKQHFIG
LTFITEIFVFLIINVCDFNFGQGYNYFYIMGAMYLAGVILGVLTLPETRR
MTLQGAQEQFNKFVNFRF*

GH19118.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG42825-PA 518 CG6640-PB 1..518 1..518 2711 100 Plus
CG32054-PA 563 CG32054-PA 1..563 1..518 1514 53.3 Plus
CG32053-PA 496 CG32053-PA 45..492 67..514 783 39 Plus
CG42826-PA 473 CG42826-PA 8..473 53..518 699 34.4 Plus
CG17930-PA 502 CG17930-PA 10..495 22..512 461 29.2 Plus