Clone GH19141 Report

Search the DGRC for GH19141

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:191
Well:41
Vector:pOT2
Associated Gene/TranscriptCG8199-RA
Protein status:GH19141.pep: gold
Preliminary Size:1759
Sequenced Size:1767

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8199 2001-01-01 Release 2 assignment
CG8199 2001-07-04 Blastp of sequenced clone
CG8199 2003-01-01 Sim4 clustering to Release 3
CG8199 2008-04-29 Release 5.5 accounting
CG8199 2008-08-15 Release 5.9 accounting
CG8199 2008-12-18 5.12 accounting

Clone Sequence Records

GH19141.complete Sequence

1767 bp (1767 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051542

> GH19141.complete
CGGCACGAGGCGTAATCAGCTGGGAAACACGCAGCTGAATCTTCAAAATT
ACCTGTTGCATTTAATAGATTAGACACAAATTATATACCATGTCATTCCT
GCGAAAATCGGTGCACCTATTGGGTTCTGTGGCGAGGCGCCAACGACACC
TGAAAGTGATTGAAGGAGCGATCTCGACAGCTGCGCGGGACTTCAGCTCA
AAGCCATCGGAAGATTACGCCAATTTCCCCGGTGCCAAGGCTCCATTTGT
CAGCAAATTGAACCTCATTCAACCGGAAGACTATGCGCCAATACCAATTT
ACCGGGTGATGGACCAGGATGGCTATATAGCGGATGAGACCCAGGATCCC
CAGCTGGGCCGTGAGGTTGTGGAGAAAATGTTTCGCGATATGGTGCTGCT
GAACACCATGGACAAAATCCTGTACGAATCCCAGCGACAGGGCAGAATCT
CATTCTACATGACCAATTTCGGCGAGGAGGCTTCACACATTGGCAGTGCC
GCCGCCTTGGAGATGCGGGATCTCATCTACGGGCAGTATCGTGAAGCGGG
TGTTCTGGTTTGGCGTGGCTTCCGTATCGACCAGTTTATCGATCAGTGCT
ACGGCAACACGGACGACTTGGGTCGCGGCAAGCAGATGCCCGTCCACTAC
GGCTCAAGGGAACTTAACTTTGTCACCATCTCCAGTCCGCTTTCCACCCA
AATGCCCCAGGCCGTTGGTGCCGCCTACGCCATGAAATTGAGGCCAAACA
ACGATGCCTGTGTGGTCTGTTACTTTGGTGAGGGAGCTGCTTCCGAGGGA
GATGCACATGCTGCCTTTAACTTTGCTGCCACTTTGGGTTGTCCGGCTAT
CCTCTTCTGTCGAAACAACGGCTTTGCCATATCCACACCATCGCATGAAC
AGTACAAGGGCGATGGAATCGCCGGTCGCGGACCTATGGGCTATGGAATT
ACTACCATTCGAGTGGATGGCACAGACGTCTTCGCCGTCTATAATGCGAT
GAAGGCTGCCAGGGAGTATGTCCTCAAGGAGAACAAGCCGGTGGTGTTCG
AGGCACTGGCCTATCGAGTGGGTCACCATTCCACCTCAGATGATAGTACA
GCCTACCGACCAGCGGAGGAGATCGAGATTTGGAACTCGGTGGAGCACCC
AATATCCAAGCTTAAGCGCTACATGGTGCACAAAGGCTGGTTTGACGAGA
CTGTCGAAAACGAATATGTCAAGGACATAAGGAAAAAGGTTTTGAAGCAG
ATCGCAGTGTCCGAGAAGAAACTCAAGCCCAACTGGCGTGAGATGTTCGA
AGGCGTCTACGCGGAGATGCCGGATCATTTGATTGAGCAGCGTAGCGAGC
TGGAAAAACATATCGAGGCCCACAAGGAGCACTATCCCTTGAAGGACTTT
GAGAAATAGATTCCAGATAGGTGCCATAAAGATGCTAACAAATCAGAAAT
CAAAACGAACCGAGAGACTCGATCGAAAGTGCATTTATTATGATTAAGCA
ATAGGCAAACAGTTTTTTGTGGGTTCAACCCGTTTGTTATGACTCATCTG
TACAGGTGGGTCGGTGGATATGTGAAATTAGACACTTTGGGTTTTTGGGT
TTTCTCTGACCAACGAAGAGGATAAACTTGGTTGCATCCTAGGTCTTAAT
TTGCACATACAAAGTGACCCACTCTGGTGCAGGTGTTATGAAAAGGTGTT
AAAATTTATTAAATTTGATTTACATACAATATACATATACTGAAACAATA
AAAAAAAAAAAAAAAAA

GH19141.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:35:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8199-RA 1836 CG8199-RA 20..1760 10..1750 8705 100 Plus
AP-47-RA 1898 AP-47-RA 1802..1898 1750..1654 485 100 Minus
AP-47.a 1692 AP-47.a 1627..1692 1750..1685 330 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5382718..5383608 859..1749 4455 100 Plus
chr3R 27901430 chr3R 5381835..5382370 158..693 2680 100 Plus
chr3R 27901430 chr3R 5382437..5382602 694..859 830 100 Plus
chr3R 27901430 chr3R 5381627..5381775 10..158 745 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:58:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9556886..9557777 859..1750 4460 100 Plus
3R 32079331 3R 9556003..9556538 158..693 2680 100 Plus
3R 32079331 3R 9556605..9556770 694..859 830 100 Plus
3R 32079331 3R 9555795..9555943 10..158 745 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9297717..9298608 859..1750 4460 100 Plus
3R 31820162 3R 9296834..9297369 158..693 2680 100 Plus
3R 31820162 3R 9297436..9297601 694..859 830 100 Plus
3R 31820162 3R 9296626..9296774 10..158 745 100 Plus
Blast to na_te.dros performed on 2019-03-16 13:00:05 has no hits.

GH19141.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:00:46 Download gff for GH19141.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5381627..5381775 10..158 100 -> Plus
chr3R 5381836..5382370 159..693 100 -> Plus
chr3R 5382437..5382602 694..859 100 -> Plus
chr3R 5382719..5383608 860..1749 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:48:50 Download gff for GH19141.complete
Subject Subject Range Query Range Percent Splice Strand
CG8199-RA 1..1320 90..1409 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:25:17 Download gff for GH19141.complete
Subject Subject Range Query Range Percent Splice Strand
CG8199-RA 1..1320 90..1409 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:14:24 Download gff for GH19141.complete
Subject Subject Range Query Range Percent Splice Strand
CG8199-RA 1..1320 90..1409 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:58:17 Download gff for GH19141.complete
Subject Subject Range Query Range Percent Splice Strand
CG8199-RA 1..1320 90..1409 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:12:16 Download gff for GH19141.complete
Subject Subject Range Query Range Percent Splice Strand
CG8199-RA 1..1320 90..1409 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:23:46 Download gff for GH19141.complete
Subject Subject Range Query Range Percent Splice Strand
CG8199-RA 1..1740 10..1749 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:25:17 Download gff for GH19141.complete
Subject Subject Range Query Range Percent Splice Strand
CG8199-RA 1..1740 10..1749 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:14:24 Download gff for GH19141.complete
Subject Subject Range Query Range Percent Splice Strand
CG8199-RA 11..1750 10..1749 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:58:17 Download gff for GH19141.complete
Subject Subject Range Query Range Percent Splice Strand
CG8199-RA 1..1740 10..1749 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:16 Download gff for GH19141.complete
Subject Subject Range Query Range Percent Splice Strand
CG8199-RA 11..1750 10..1749 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:00:46 Download gff for GH19141.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9555795..9555943 10..158 100 -> Plus
3R 9556004..9556538 159..693 100 -> Plus
3R 9556605..9556770 694..859 100 -> Plus
3R 9556887..9557776 860..1749 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:00:46 Download gff for GH19141.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9555795..9555943 10..158 100 -> Plus
3R 9556004..9556538 159..693 100 -> Plus
3R 9556605..9556770 694..859 100 -> Plus
3R 9556887..9557776 860..1749 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:00:46 Download gff for GH19141.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9555795..9555943 10..158 100 -> Plus
3R 9556004..9556538 159..693 100 -> Plus
3R 9556605..9556770 694..859 100 -> Plus
3R 9556887..9557776 860..1749 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:14:24 Download gff for GH19141.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5381517..5381665 10..158 100 -> Plus
arm_3R 5381726..5382260 159..693 100 -> Plus
arm_3R 5382327..5382492 694..859 100 -> Plus
arm_3R 5382609..5383498 860..1749 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:36:05 Download gff for GH19141.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9296835..9297369 159..693 100 -> Plus
3R 9297436..9297601 694..859 100 -> Plus
3R 9297718..9298607 860..1749 100   Plus
3R 9296626..9296774 10..158 100 -> Plus

GH19141.pep Sequence

Translation from 89 to 1408

> GH19141.pep
MSFLRKSVHLLGSVARRQRHLKVIEGAISTAARDFSSKPSEDYANFPGAK
APFVSKLNLIQPEDYAPIPIYRVMDQDGYIADETQDPQLGREVVEKMFRD
MVLLNTMDKILYESQRQGRISFYMTNFGEEASHIGSAAALEMRDLIYGQY
REAGVLVWRGFRIDQFIDQCYGNTDDLGRGKQMPVHYGSRELNFVTISSP
LSTQMPQAVGAAYAMKLRPNNDACVVCYFGEGAASEGDAHAAFNFAATLG
CPAILFCRNNGFAISTPSHEQYKGDGIAGRGPMGYGITTIRVDGTDVFAV
YNAMKAAREYVLKENKPVVFEALAYRVGHHSTSDDSTAYRPAEEIEIWNS
VEHPISKLKRYMVHKGWFDETVENEYVKDIRKKVLKQIAVSEKKLKPNWR
EMFEGVYAEMPDHLIEQRSELEKHIEAHKEHYPLKDFEK*

GH19141.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18476-PA 439 GF18476-PA 1..439 1..439 2122 86.8 Plus
Dana\GF15055-PA 403 GF15055-PA 71..380 96..407 276 27.7 Plus
Dana\GF22274-PA 399 GF22274-PA 100..349 128..388 257 31.4 Plus
Dana\GF22275-PA 520 GF22275-PA 67..359 86..384 221 27.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16874-PA 439 GG16874-PA 1..439 1..439 2283 95.4 Plus
Dere\GG18722-PA 440 GG18722-PA 141..390 128..388 260 31 Plus
Dere\GG18723-PA 480 GG18723-PA 53..393 84..436 254 27.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18279-PA 439 GH18279-PA 1..439 1..439 1861 77.7 Plus
Dgri\GH20215-PA 513 GH20215-PA 51..350 86..395 284 30.8 Plus
Dgri\GH12828-PA 399 GH12828-PA 100..379 128..418 267 29.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8199-PA 439 CG8199-PA 1..439 1..439 2310 100 Plus
Pdha-PB 328 CG7010-PB 29..278 128..388 262 31.4 Plus
Pdha-PD 399 CG7010-PD 100..349 128..388 262 31.4 Plus
Pdha-PA 399 CG7010-PA 100..349 128..388 262 31.4 Plus
Pdha-PC 443 CG7010-PC 144..393 128..388 262 31.4 Plus
CG7024-PA 479 CG7024-PA 53..393 84..436 253 26.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24087-PA 435 GI24087-PA 1..435 1..439 1907 78.4 Plus
Dmoj\GI14911-PA 461 GI14911-PA 20..319 86..395 274 28.8 Plus
Dmoj\GI14910-PA 399 GI14910-PA 100..349 128..388 264 31.4 Plus
Dmoj\GI14124-PA 420 GI14124-PA 113..354 122..370 244 27.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22326-PA 439 GL22326-PA 1..439 1..439 2118 87.5 Plus
Dper\GL13095-PA 540 GL13095-PA 77..412 86..429 274 26.7 Plus
Dper\GL13094-PA 399 GL13094-PA 100..349 128..388 259 31.4 Plus
Dper\GL18702-PA 414 GL18702-PA 93..391 103..410 232 27.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20891-PA 439 GA20891-PA 1..439 1..439 2114 87.2 Plus
Dpse\GA20040-PA 533 GA20040-PA 77..412 86..429 274 26.7 Plus
Dpse\GA20028-PA 399 GA20028-PA 100..349 128..388 259 31.4 Plus
Dpse\GA25763-PA 414 GA25763-PA 93..391 103..410 236 27.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23814-PA 439 GM23814-PA 1..439 1..439 2315 97 Plus
Dsec\GM12362-PA 475 GM12362-PA 52..392 84..436 261 28.1 Plus
Dsec\GM12361-PA 441 GM12361-PA 142..391 128..388 259 31 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18623-PA 439 GD18623-PA 1..439 1..439 2343 98.2 Plus
Dsim\GD16702-PA 392 GD16702-PA 100..342 128..388 270 31.4 Plus
Dsim\GD16703-PA 476 GD16703-PA 53..393 84..436 257 27.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10905-PA 437 GJ10905-PA 1..437 1..439 1918 80 Plus
Dvir\GJ18943-PA 548 GJ18943-PA 66..399 86..413 300 29.7 Plus
Dvir\GJ18942-PA 399 GJ18942-PA 100..349 128..388 271 32.2 Plus
Dvir\GJ17759-PA 420 GJ17759-PA 88..398 98..410 237 24.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11824-PA 439 GK11824-PA 1..439 1..439 1949 79.5 Plus
Dwil\GK25307-PA 632 GK25307-PA 74..372 86..394 278 27.7 Plus
Dwil\GK25306-PA 474 GK25306-PA 175..424 128..388 265 31.8 Plus
Dwil\GK15549-PA 430 GK15549-PA 91..405 88..408 237 26.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25960-PA 439 GE25960-PA 1..439 1..439 2309 96.1 Plus
Dyak\GE16361-PA 438 GE16361-PA 139..388 128..388 260 31 Plus
Dyak\GE16362-PA 485 GE16362-PA 53..382 84..419 241 26.5 Plus

GH19141.hyp Sequence

Translation from 89 to 1408

> GH19141.hyp
MSFLRKSVHLLGSVARRQRHLKVIEGAISTAARDFSSKPSEDYANFPGAK
APFVSKLNLIQPEDYAPIPIYRVMDQDGYIADETQDPQLGREVVEKMFRD
MVLLNTMDKILYESQRQGRISFYMTNFGEEASHIGSAAALEMRDLIYGQY
REAGVLVWRGFRIDQFIDQCYGNTDDLGRGKQMPVHYGSRELNFVTISSP
LSTQMPQAVGAAYAMKLRPNNDACVVCYFGEGAASEGDAHAAFNFAATLG
CPAILFCRNNGFAISTPSHEQYKGDGIAGRGPMGYGITTIRVDGTDVFAV
YNAMKAAREYVLKENKPVVFEALAYRVGHHSTSDDSTAYRPAEEIEIWNS
VEHPISKLKRYMVHKGWFDETVENEYVKDIRKKVLKQIAVSEKKLKPNWR
EMFEGVYAEMPDHLIEQRSELEKHIEAHKEHYPLKDFEK*

GH19141.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8199-PA 439 CG8199-PA 1..439 1..439 2310 100 Plus
l(1)G0334-PB 328 CG7010-PB 29..278 128..388 262 31.4 Plus
l(1)G0334-PD 399 CG7010-PD 100..349 128..388 262 31.4 Plus
l(1)G0334-PA 399 CG7010-PA 100..349 128..388 262 31.4 Plus
l(1)G0334-PC 443 CG7010-PC 144..393 128..388 262 31.4 Plus