BDGP Sequence Production Resources |
Search the DGRC for GH19142
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 191 |
Well: | 42 |
Vector: | pOT2 |
Associated Gene/Transcript | CG17549-RA |
Protein status: | GH19142.pep: gold |
Preliminary Size: | 1179 |
Sequenced Size: | 1047 |
Gene | Date | Evidence |
---|---|---|
CG17549 | 2001-01-01 | Release 2 assignment |
CG17549 | 2003-01-01 | Sim4 clustering to Release 3 |
CG17549 | 2003-02-27 | Blastp of sequenced clone |
CG17549 | 2008-04-29 | Release 5.5 accounting |
CG17549 | 2008-08-15 | Release 5.9 accounting |
CG17549 | 2008-12-18 | 5.12 accounting |
1047 bp (1047 high quality bases) assembled on 2003-02-27
GenBank Submission: AY060741
> GH19142.complete GGAAGTCTCCAAAGTTCAATCGCAAATGCCCAGATAAAAATATGTGGAAG GTTCTACTTATTTGTGTGGTGATGAGTGCTCTGAATGAAGAGTCATCGGG AGCAAAAACGGCTCCGACCCGCAGACGACGAGCATATGCCGGCGGTTACG CCGGAGGGTATGCCAGCAGTGGAGGAGGAGCCGGTGGCTATACGGGAAGC TATAACAGTGGCGGTGGACACAGCAGCTATGTGGGTACCGGTGGTGGTGG CGGTAGTGGCTATTACGATTACGATGACTATGGCGGCACTTCACCCAACT TTGGCATCATCGATCCGTATCTATTCCACCAGCAGCTGACGAATCATATT TTGGCCCAGAACTTCGCCAACCAACAAGCTATAACTGGTCTGGCCACGGC TGGCAATGCTTATGCATCCGCGGATGCATCTCTTGTCAACGACAACGATA TTCGCATCCAGCAACAGATCGCCGCTCAACAGGCCTACCACGACAATCTA GTGCGCCAGAATCGGTACAGAGGAGGCACCAGCTCTAGCTTCAGTTCCAG CTCTGGATCCGGGTCTGGATCTGGATCGGGATCCTACAACTCACATCGCT ATGCACCCAGCTATGCATCAGCTTCCGGATCTATCGGTTCCAATGGCTAT CGCCAGACGGCCTTCATTAGCCCATCCAATCCGGCCTCTCCCAACATTGT GAATCGCTTTGGCGGCGGAAGCGGTGGTGGATCCTCGTTCTCCAGCTCCA GCAGCTCCGGAGGAGGTGGTGGCAGCGGTGGTGGCTACAAGGGCGTCTCG GTCTCGTCCTTCAGCCACAGCAACGGAGACGGAACCAGTCGACGTGGAGC CCAGACCACGGTCAACGACAACGGAAAGATCACCTCGTATTCGGTGCACT CCTAGAAAGATCGGCGGAGACCCTCCACTGGTGGCTAGGCTAACATTTAC TCCGGTCTGACAAAGCAAACCGCTTCCATTGAATATGTATAAAATATAAA AATAATATACGTGTATTTTATTGTCAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 19385585..19385927 | 1025..683 | 1685 | 99.4 | Minus |
chr2L | 23010047 | chr2L | 19386566..19386841 | 376..101 | 1380 | 100 | Minus |
chr2L | 23010047 | chr2L | 19386072..19386304 | 684..452 | 1105 | 98.3 | Minus |
chr2L | 23010047 | chr2L | 19387000..19387095 | 102..7 | 480 | 100 | Minus |
chr2L | 23010047 | chr2L | 19386397..19386471 | 451..377 | 360 | 98.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 19387047..19387392 | 1028..683 | 1730 | 100 | Minus |
2L | 23513712 | 2L | 19388040..19388315 | 376..101 | 1380 | 100 | Minus |
2L | 23513712 | 2L | 19387537..19387769 | 684..452 | 1165 | 100 | Minus |
2L | 23513712 | 2L | 19388474..19388569 | 102..7 | 480 | 100 | Minus |
2L | 23513712 | 2L | 19387862..19387936 | 451..377 | 375 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 19387047..19387392 | 1028..683 | 1730 | 100 | Minus |
2L | 23513712 | 2L | 19388040..19388315 | 376..101 | 1380 | 100 | Minus |
2L | 23513712 | 2L | 19387537..19387769 | 684..452 | 1165 | 100 | Minus |
2L | 23513712 | 2L | 19388474..19388569 | 102..7 | 480 | 100 | Minus |
2L | 23513712 | 2L | 19387862..19387936 | 451..377 | 375 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 19386397..19386471 | 377..451 | 98 | <- | Minus |
chr2L | 19385585..19385926 | 684..1025 | 92 | <- | Minus |
chr2L | 19386073..19386304 | 452..683 | 98 | <- | Minus |
chr2L | 19386566..19386839 | 103..376 | 100 | <- | Minus |
chr2L | 19387000..19387097 | 1..102 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17549-RA | 1..864 | 42..905 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17549-RD | 1..864 | 42..905 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17549-RA | 1..864 | 42..905 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17549-RA | 1..864 | 42..905 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17549-RA | 1..864 | 42..905 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17549-RA | 30..1054 | 1..1025 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17549-RA | 30..1054 | 1..1025 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17549-RA | 30..1054 | 1..1025 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17549-RA | 30..1054 | 1..1025 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17549-RA | 30..1054 | 1..1025 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19387862..19387936 | 377..451 | 100 | <- | Minus |
2L | 19387050..19387391 | 684..1025 | 100 | <- | Minus |
2L | 19387538..19387769 | 452..683 | 100 | <- | Minus |
2L | 19388040..19388313 | 103..376 | 100 | <- | Minus |
2L | 19388474..19388571 | 1..102 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19387862..19387936 | 377..451 | 100 | <- | Minus |
2L | 19387050..19387391 | 684..1025 | 100 | <- | Minus |
2L | 19387538..19387769 | 452..683 | 100 | <- | Minus |
2L | 19388040..19388313 | 103..376 | 100 | <- | Minus |
2L | 19388474..19388571 | 1..102 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19387862..19387936 | 377..451 | 100 | <- | Minus |
2L | 19387050..19387391 | 684..1025 | 100 | <- | Minus |
2L | 19387538..19387769 | 452..683 | 100 | <- | Minus |
2L | 19388040..19388313 | 103..376 | 100 | <- | Minus |
2L | 19388474..19388571 | 1..102 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 19387050..19387391 | 684..1025 | 100 | <- | Minus |
arm_2L | 19387538..19387769 | 452..683 | 100 | <- | Minus |
arm_2L | 19387862..19387936 | 377..451 | 100 | <- | Minus |
arm_2L | 19388040..19388313 | 103..376 | 100 | <- | Minus |
arm_2L | 19388474..19388571 | 1..102 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19387050..19387391 | 684..1025 | 100 | <- | Minus |
2L | 19387538..19387769 | 452..683 | 100 | <- | Minus |
2L | 19387862..19387936 | 377..451 | 100 | <- | Minus |
2L | 19388040..19388313 | 103..376 | 100 | <- | Minus |
2L | 19388474..19388571 | 1..102 | 96 | Minus |
Translation from 4 to 904
> GH19142.hyp APKFNRKCPDKNMWKVLLICVVMSALNEESSGAKTAPTRRRRAYAGGYAG GYASSGGGAGGYTGSYNSGGGHSSYVGTGGGGGSGYYDYDDYGGTSPNFG IIDPYLFHQQLTNHILAQNFANQQAITGLATAGNAYASADASLVNDNDIR IQQQIAAQQAYHDNLVRQNRYRGGTSSSFSSSSGSGSGSGSGSYNSHRYA PSYASASGSIGSNGYRQTAFISPSNPASPNIVNRFGGGSGGGSSFSSSSS SGGGGGSGGGYKGVSVSSFSHSNGDGTSRRGAQTTVNDNGKITSYSVHS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17549-PD | 287 | CG17549-PD | 1..287 | 13..299 | 1501 | 100 | Plus |
CG17549-PA | 287 | CG17549-PA | 1..287 | 13..299 | 1501 | 100 | Plus |
CG17549-PE | 262 | CG17549-PE | 1..262 | 13..299 | 1339 | 90.9 | Plus |
CG17549-PC | 262 | CG17549-PC | 1..262 | 13..299 | 1339 | 90.9 | Plus |
CG17549-PB | 262 | CG17549-PB | 1..262 | 13..299 | 1339 | 90.9 | Plus |
Translation from 41 to 904
> GH19142.pep MWKVLLICVVMSALNEESSGAKTAPTRRRRAYAGGYAGGYASSGGGAGGY TGSYNSGGGHSSYVGTGGGGGSGYYDYDDYGGTSPNFGIIDPYLFHQQLT NHILAQNFANQQAITGLATAGNAYASADASLVNDNDIRIQQQIAAQQAYH DNLVRQNRYRGGTSSSFSSSSGSGSGSGSGSYNSHRYAPSYASASGSIGS NGYRQTAFISPSNPASPNIVNRFGGGSGGGSSFSSSSSSGGGGGSGGGYK GVSVSSFSHSNGDGTSRRGAQTTVNDNGKITSYSVHS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15198-PA | 287 | GF15198-PA | 1..287 | 1..287 | 744 | 79.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21637-PA | 282 | GG21637-PA | 1..282 | 1..287 | 850 | 91.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12934-PA | 213 | GH12934-PA | 1..213 | 11..287 | 590 | 57.6 | Plus |
Dgri\GH13471-PA | 217 | GH13471-PA | 47..217 | 74..287 | 580 | 64.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17549-PD | 287 | CG17549-PD | 1..287 | 1..287 | 1501 | 100 | Plus |
CG17549-PA | 287 | CG17549-PA | 1..287 | 1..287 | 1501 | 100 | Plus |
CG17549-PE | 262 | CG17549-PE | 1..262 | 1..287 | 1339 | 90.9 | Plus |
CG17549-PC | 262 | CG17549-PC | 1..262 | 1..287 | 1339 | 90.9 | Plus |
CG17549-PB | 262 | CG17549-PB | 1..262 | 1..287 | 1339 | 90.9 | Plus |
CG9083-PB | 317 | CG9083-PB | 63..313 | 34..266 | 164 | 30.2 | Plus |
sbb-PE | 929 | CG5580-PE | 383..608 | 18..261 | 163 | 28.2 | Plus |
sbb-PC | 929 | CG5580-PC | 383..608 | 18..261 | 163 | 28.2 | Plus |
sbb-PF | 939 | CG5580-PF | 393..618 | 18..261 | 163 | 28.2 | Plus |
sbb-PH | 2302 | CG5580-PH | 383..608 | 18..261 | 163 | 28.2 | Plus |
sbb-PD | 2302 | CG5580-PD | 383..608 | 18..261 | 163 | 28.2 | Plus |
sbb-PG | 2312 | CG5580-PG | 393..618 | 18..261 | 163 | 28.2 | Plus |
sbb-PJ | 2330 | CG5580-PJ | 393..618 | 18..261 | 163 | 28.2 | Plus |
CG9083-PB | 317 | CG9083-PB | 37..243 | 43..272 | 158 | 27.4 | Plus |
NAT1-PD | 1488 | CG3845-PD | 145..379 | 18..284 | 154 | 28.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17223-PA | 222 | GI17223-PA | 46..222 | 74..287 | 567 | 67.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21111-PA | 264 | GL21111-PA | 86..264 | 85..287 | 655 | 78.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14551-PA | 266 | GA14551-PA | 86..266 | 85..287 | 655 | 79.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17015-PA | 274 | GM17015-PA | 1..274 | 1..287 | 1278 | 93 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21765-PA | 277 | GD21765-PA | 1..277 | 1..287 | 793 | 89.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17980-PA | 238 | GJ17980-PA | 58..238 | 86..287 | 537 | 72.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23840-PA | 279 | GK23840-PA | 1..279 | 1..287 | 716 | 76.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12656-PA | 285 | GE12656-PA | 1..285 | 1..287 | 826 | 90.6 | Plus |