Clone GH19206 Report

Search the DGRC for GH19206

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:192
Well:6
Vector:pOT2
Associated Gene/TranscriptCG2082-RB
Protein status:GH19206.pep: gold
Preliminary Size:2182
Sequenced Size:2277

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2082 2001-09-19 Blastp of sequenced clone
CG2082 2008-04-29 Release 5.5 accounting
CG2082 2008-08-15 Release 5.9 accounting
CG2082 2008-12-18 5.12 accounting

Clone Sequence Records

GH19206.complete Sequence

2277 bp assembled on 2006-11-09

GenBank Submission: AY060319

> GH19206.complete
CCTCCGACTTGGACGCGTTTTCATCGCATGCGATCGTCTCCGGCCGAAAG
TCGCGTCTTTCCCGCTCCGATTTTAATGTCAGTTGTTGATAATTTCCGCT
CGAATATTTATGCTGAGCTCGGTGGCTGACACTTTCGAGTCCAAAGTTGA
AGTTGCGCCATAATTGCGATTCGGTCCATAAGCTGCGTTCCCCGGTGATA
CCTACACCCCCGCGTGACTTGTCGGTTCCCAGTATCTTCCGGATAGCCCA
GTCCCAGTCACCGATCCTGAACCGCATCCAGAGCCCCAGTCCAACCATGT
CCATTGCCGATAAACGCGCCTCCTTCGCGCGCCGCGCCGAATCCCTGGTG
GAGCGGAAATACAATATCAGCACAGAGAAATGCGGGGATCTGACGGTCAT
AGTGCAGGGCGACCTGTCACAGCAGGAGAAACGCGCCGTGTTCATAACGG
TTCACGACCTGGGCTGCAACCACAACTCATTCCAGGAGTTCGTGAGCAGT
CCCTGCATGACGGAGATCAAGGAGCGCTCCTGCTTCATCCACGTGGACGT
GCCGGGGCACGCGGACAACGCGGAGGCCCTGGCTGACGGCTTTCCGTTTC
CCTCGCTCCAGTCCCTGGGCGAGGACCTGGTCACCGTGCTGGACTACCTG
CACGTAAAGTACGTGATCGGCCTAGGCGAGGGTGCCGGAGCCAATGTCCT
GGCCCGCTTCGGACTGGCCCATCCCAGCCGGGTGCTGGGCCTCATCCTGA
TCAACGCGACTGGCAGCGCCGCCAGTGTAGTGCAGTCCTTCAAGAACAAG
TTCATTAGCTGGAAGAGCGACGAGGTGGCCCAGTCGGCTGAGAGCTTTCT
GATGTACCACAAATTCGGACATGTTATGGAGCAAATCGTGGGCGAGAATC
CGGACAAGGAGAAGATCGTGGCCGAGTACCAGAAGCGTCTTCACCGATCC
CTAAACAGCAAGAACATCGGTCTCTATGTCAAAGCATTTATGAATCGCAA
GGACCTTACGCTCAAGGGCTGCAAGGTAGATGTCATCCTGATCACGGGCA
TGCTCAGCCCCTATGCGTCCATGGTCGAGAAGCTCCATCGCGACGTGGAG
AAGGAGAGGGTCACCATTCTGAAGATCGAGCGGGCTGGCGATGTCCTCGC
CGATGCTCCCGGAAAGGTGGCCCAATCCATTCTGCTGTTCTGCAAGGGAC
AGGGGCTGCTCACGTCGGTGGTGATGCCAGGCGTGGATCGCGGACGCGCC
TTCTCCACGGCTAGCTCCGGATCGCTGGAGGGGGCCAACGGATCGCGGCG
CCTGTCGCGCGGCATCTCGATGGAGGATTATGACAAGCCCAACATCCGCC
GGCTCAGCATCATGAACAGTGAGTTGCCCAAGAAGGAGTAAATTAGACGA
GACCACGCCACGCCCACGTTGGTAGATTAAGCTTGATTGCGTATTTAAAC
TACTTAAACTGGTAAAATACCTTTAGTCTGAGCAAAACGTATATGTGTGA
ACCCAGAGCCAAACAATCATCCCAAGTGTAACCGCTTTTCCGCGGATTTT
AGGCCAAATTCTAATTAGTAATCGCTTAAAGTTTTTAAAGAGTAGCAAAC
CCAACAACAACACATTGACCATCCGAATCCGAATGGACGGAAATAAGCCG
AAAACTGTATTTACACTGTGTACTTAGGATTAGTCTTATGTATGTAACCC
CAAGAAGCCCACCTAAGAATCTGAAACAATGTTCAAACATCCATATCTAA
ATCTTCAACTCGACCGAACTTATCACAACTGCTAAACACGAACTATAAAA
CGCAATCTATTTAATACCTCCGAATAGTAAACTGTACCTAAACACGTAGA
AACTAGAATGGAAAAATCCCAAATGTTACTCCTCTACTCTGTCACCCTTC
AACTTTCTAAACTTTCTATAGTGAACAGTCTCAAATGTTGCTATTTTAGT
AAATAAAAGAAAAACAGAAAAAATCATATACAAAGTTCGAACAGTCTAAG
TTGAGACCAGCTTTGCGAAAGATGCACACGGATTATATATACTCGTATGT
ATGTGTAAACAATCAAAACCAAAAGCAATTCGAAAACCAAAGAATATTAA
TTGTCATGTAGGTGTCATGCGTTTTTCAAAGCGAGTATTAAAAATTGTTT
TATCGCATTGGCTTTAGCTTAACATTTAGTGAAGACATTTAAGTCGACCA
AGCACTCAGATAAGTAGATGCAACTACACCGTTACACAATAAAGTTAAAT
GAAAACGCCAAAAAAAAAAAAAAAAAA

GH19206.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG2082-RB 2283 CG2082-RB 22..2280 1..2259 11295 100 Plus
CG2082-RL 2277 CG2082-RL 899..2277 881..2259 6895 100 Plus
CG2082-RJ 2281 CG2082-RJ 894..2271 882..2259 6890 100 Plus
CG2082-RL 2277 CG2082-RL 22..893 1..872 4360 100 Plus
CG2082-RJ 2281 CG2082-RJ 22..893 1..872 4360 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1584917..1586018 2259..1158 5510 100 Minus
chr3R 27901430 chr3R 1587819..1588147 800..472 1645 100 Minus
chr3R 27901430 chr3R 1603237..1603418 182..1 910 100 Minus
chr3R 27901430 chr3R 1602599..1602774 356..181 880 100 Minus
chr3R 27901430 chr3R 1586277..1586439 1157..995 815 100 Minus
chr3R 27901430 chr3R 1586496..1586610 994..880 575 100 Minus
chr3R 27901430 chr3R 1587291..1587366 874..799 380 100 Minus
chr3R 27901430 chr3R 1588204..1588269 471..406 330 100 Minus
chr3R 27901430 chr3R 1588351..1588403 408..356 265 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:59:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5759270..5760371 2259..1158 5510 100 Minus
3R 32079331 3R 5762172..5762500 800..472 1645 100 Minus
3R 32079331 3R 5777590..5777771 182..1 910 100 Minus
3R 32079331 3R 5776952..5777127 356..181 880 100 Minus
3R 32079331 3R 5760630..5760792 1157..995 815 100 Minus
3R 32079331 3R 5760849..5760963 994..880 575 100 Minus
3R 32079331 3R 5761644..5761719 874..799 380 100 Minus
3R 32079331 3R 5762557..5762622 471..406 330 100 Minus
3R 32079331 3R 5762704..5762756 408..356 265 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5500101..5501202 2259..1158 5510 100 Minus
3R 31820162 3R 5503003..5503331 800..472 1645 100 Minus
3R 31820162 3R 5518421..5518602 182..1 910 100 Minus
3R 31820162 3R 5517783..5517958 356..181 880 100 Minus
3R 31820162 3R 5501461..5501623 1157..995 815 100 Minus
3R 31820162 3R 5501680..5501794 994..880 575 100 Minus
3R 31820162 3R 5502475..5502550 874..799 380 100 Minus
3R 31820162 3R 5503388..5503453 471..406 330 100 Minus
3R 31820162 3R 5503535..5503587 408..356 265 100 Minus
Blast to na_te.dros performed 2019-03-15 13:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 7333..7410 242..320 131 64.6 Plus

GH19206.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:11:00 Download gff for GH19206.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1603237..1603418 1..182 100   Minus
chr3R 1584917..1586018 1158..2259 100 <- Minus
chr3R 1586277..1586439 995..1157 100 <- Minus
chr3R 1586496..1586608 882..994 100 <- Minus
chr3R 1587283..1587364 801..881 95 <- Minus
chr3R 1587819..1588147 472..800 100 <- Minus
chr3R 1588204..1588267 408..471 100 <- Minus
chr3R 1588352..1588402 357..407 100 <- Minus
chr3R 1602599..1602772 183..356 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:43:29 Download gff for GH19206.complete
Subject Subject Range Query Range Percent Splice Strand
CG2082-RB 1..1095 297..1391 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:19:57 Download gff for GH19206.complete
Subject Subject Range Query Range Percent Splice Strand
CG2082-RK 1..1095 297..1391 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:58:21 Download gff for GH19206.complete
Subject Subject Range Query Range Percent Splice Strand
CG2082-RB 1..1095 297..1391 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:36:44 Download gff for GH19206.complete
Subject Subject Range Query Range Percent Splice Strand
CG2082-RB 1..1095 297..1391 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:23:11 Download gff for GH19206.complete
Subject Subject Range Query Range Percent Splice Strand
CG2082-RB 1..1095 297..1391 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:43:28 Download gff for GH19206.complete
Subject Subject Range Query Range Percent Splice Strand
CG2082-RB 24..2282 1..2259 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:19:57 Download gff for GH19206.complete
Subject Subject Range Query Range Percent Splice Strand
CG2082-RB 22..2280 1..2259 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:58:21 Download gff for GH19206.complete
Subject Subject Range Query Range Percent Splice Strand
CG2082-RB 22..2280 1..2259 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:36:45 Download gff for GH19206.complete
Subject Subject Range Query Range Percent Splice Strand
CG2082-RB 24..2282 1..2259 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:23:11 Download gff for GH19206.complete
Subject Subject Range Query Range Percent Splice Strand
CG2082-RB 22..2280 1..2259 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:11:00 Download gff for GH19206.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5760630..5760792 995..1157 100 <- Minus
3R 5760849..5760961 882..994 100 <- Minus
3R 5761636..5761717 801..881 95 <- Minus
3R 5762172..5762500 472..800 100 <- Minus
3R 5762557..5762620 408..471 100 <- Minus
3R 5762705..5762755 357..407 100 <- Minus
3R 5776952..5777125 183..356 100 <- Minus
3R 5777590..5777771 1..182 100   Minus
3R 5759270..5760371 1158..2259 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:11:00 Download gff for GH19206.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5760630..5760792 995..1157 100 <- Minus
3R 5760849..5760961 882..994 100 <- Minus
3R 5761636..5761717 801..881 95 <- Minus
3R 5762172..5762500 472..800 100 <- Minus
3R 5762557..5762620 408..471 100 <- Minus
3R 5762705..5762755 357..407 100 <- Minus
3R 5776952..5777125 183..356 100 <- Minus
3R 5777590..5777771 1..182 100   Minus
3R 5759270..5760371 1158..2259 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:11:00 Download gff for GH19206.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5760630..5760792 995..1157 100 <- Minus
3R 5760849..5760961 882..994 100 <- Minus
3R 5761636..5761717 801..881 95 <- Minus
3R 5762172..5762500 472..800 100 <- Minus
3R 5762557..5762620 408..471 100 <- Minus
3R 5762705..5762755 357..407 100 <- Minus
3R 5776952..5777125 183..356 100 <- Minus
3R 5777590..5777771 1..182 100   Minus
3R 5759270..5760371 1158..2259 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:58:21 Download gff for GH19206.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1586352..1586514 995..1157 100 <- Minus
arm_3R 1586571..1586683 882..994 100 <- Minus
arm_3R 1587358..1587439 801..881 95 <- Minus
arm_3R 1587894..1588222 472..800 100 <- Minus
arm_3R 1588279..1588342 408..471 100 <- Minus
arm_3R 1588427..1588477 357..407 100 <- Minus
arm_3R 1602674..1602847 183..356 100 <- Minus
arm_3R 1603312..1603493 1..182 100   Minus
arm_3R 1584992..1586093 1158..2259 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:49:08 Download gff for GH19206.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5501461..5501623 995..1157 100 <- Minus
3R 5501680..5501792 882..994 100 <- Minus
3R 5502467..5502548 801..881 95 <- Minus
3R 5503536..5503586 357..407 100 <- Minus
3R 5517783..5517956 183..356 100 <- Minus
3R 5518421..5518602 1..182 100   Minus
3R 5500101..5501202 1158..2259 100 <- Minus
3R 5503003..5503331 472..800 100 <- Minus
3R 5503388..5503451 408..471 100 <- Minus

GH19206.hyp Sequence

Translation from 296 to 1263

> GH19206.hyp
MSIADKRASFARRAESLVERKYNISTEKCGDLTVIVQGDLSQQEKRAVFI
TVHDLGCNHNSFQEFVSSPCMTEIKERSCFIHVDVPGHADNAEALADGFP
FPSLQSLGEDLVTVLDYLHVKYVIGLGEGAGANVLARFGLAHPSRVLGLI
LINATGSAASVVQSFKNKFISWKSDEVAQSAESFLMYHKFGHVSSANRGR
ESGQGEDRGRVPEASSPIPKQQEHRSLCQSIYESQGPYAQGLQGRCHPDH
GHAQPLCVHGREAPSRRGEGEGHHSEDRAGWRCPRRCSRKGGPIHSAVLQ
GTGAAHVGGDARRGSRTRLLHG*

GH19206.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG2082-PK 364 CG2082-PK 1..193 1..193 990 100 Plus
CG2082-PB 364 CG2082-PB 1..193 1..193 990 100 Plus
CG2082-PN 197 CG2082-PN 1..192 1..192 986 100 Plus
CG2082-PJ 361 CG2082-PJ 1..192 1..192 986 100 Plus
CG2082-PM 211 CG2082-PM 1..211 1..202 982 92.9 Plus

GH19206.pep Sequence

Translation from 296 to 1390

> GH19206.pep
MSIADKRASFARRAESLVERKYNISTEKCGDLTVIVQGDLSQQEKRAVFI
TVHDLGCNHNSFQEFVSSPCMTEIKERSCFIHVDVPGHADNAEALADGFP
FPSLQSLGEDLVTVLDYLHVKYVIGLGEGAGANVLARFGLAHPSRVLGLI
LINATGSAASVVQSFKNKFISWKSDEVAQSAESFLMYHKFGHVMEQIVGE
NPDKEKIVAEYQKRLHRSLNSKNIGLYVKAFMNRKDLTLKGCKVDVILIT
GMLSPYASMVEKLHRDVEKERVTILKIERAGDVLADAPGKVAQSILLFCK
GQGLLTSVVMPGVDRGRAFSTASSGSLEGANGSRRLSRGISMEDYDKPNI
RRLSIMNSELPKKE*

GH19206.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18647-PA 370 GF18647-PA 27..370 21..364 1827 98.8 Plus
Dana\GF12819-PA 448 GF12819-PA 134..419 24..303 397 31.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10854-PA 367 GG10854-PA 24..367 21..364 1834 99.4 Plus
Dere\GG22116-PA 570 GG22116-PA 135..442 24..324 409 32.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19438-PA 362 GH19438-PA 24..362 21..364 1714 92.2 Plus
Dgri\GH21835-PA 450 GH21835-PA 136..421 24..303 398 31.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG2082-PK 364 CG2082-PK 1..364 1..364 1845 100 Plus
CG2082-PB 364 CG2082-PB 1..364 1..364 1845 100 Plus
CG2082-PJ 361 CG2082-PJ 1..361 1..364 1817 99.2 Plus
CG2082-PC 361 CG2082-PC 1..361 1..364 1817 99.2 Plus
CG2082-PL 363 CG2082-PL 1..363 1..364 1815 99.2 Plus
CG2082-PH 363 CG2082-PH 1..363 1..364 1815 99.2 Plus
CG2082-PG 368 CG2082-PG 25..368 21..364 1753 100 Plus
CG2082-PA 365 CG2082-PA 25..365 21..364 1725 99.1 Plus
CG2082-PO 335 CG2082-PO 1..286 71..359 1425 98.3 Plus
CG2082-PN 197 CG2082-PN 1..192 1..192 986 100 Plus
CG2082-PM 211 CG2082-PM 1..204 1..195 980 95.6 Plus
CG2082-PD 201 CG2082-PD 25..196 21..192 894 100 Plus
MESK2-PJ 468 CG15669-PJ 34..341 24..324 384 32.7 Plus
MESK2-PI 485 CG15669-PI 51..358 24..324 384 32.7 Plus
MESK2-PD 365 CG15669-PD 51..361 24..328 382 31.8 Plus
MESK2-PE 447 CG15669-PE 133..443 24..328 382 31.8 Plus
MESK2-PF 447 CG15669-PF 133..443 24..328 382 31.8 Plus
MESK2-PA 447 CG15669-PA 133..443 24..328 382 31.8 Plus
MESK2-PB 425 CG15669-PB 133..421 24..306 377 32.8 Plus
MESK2-PK 409 CG15669-PK 105..390 24..303 376 33.1 Plus
MESK2-PC 437 CG15669-PC 133..418 24..303 376 33.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22641-PA 361 GI22641-PA 6..361 4..364 1815 93.9 Plus
Dmoj\GI19078-PA 549 GI19078-PA 136..443 24..324 411 31.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23012-PA 368 GL23012-PA 25..368 21..364 1798 97.4 Plus
Dper\GL16980-PA 563 GL16980-PA 146..453 24..324 413 32.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15229-PA 368 GA15229-PA 25..368 21..364 1793 97.1 Plus
Dpse\GA15229-PB 365 GA15229-PB 25..365 21..364 1764 96.2 Plus
Dpse\GA25012-PD 470 GA25012-PD 51..358 24..324 414 32.2 Plus
Dpse\GA25012-PE 453 GA25012-PE 34..341 24..324 413 31.9 Plus
Dpse\GA25012-PG 365 GA25012-PG 51..336 24..303 403 32.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10591-PA 383 GM10591-PA 40..383 21..364 1837 100 Plus
Dsec\GM15838-PA 447 GM15838-PA 133..418 24..303 399 32.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19583-PA 368 GD19583-PA 25..368 21..364 1839 100 Plus
Dsim\GD11599-PA 536 GD11599-PA 133..440 24..324 408 32.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23888-PA 360 GJ23888-PA 22..360 21..364 1745 94.5 Plus
Dvir\GJ20053-PA 553 GJ20053-PA 138..445 24..324 402 31.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13862-PA 388 GK13862-PA 44..388 21..364 1783 96.8 Plus
Dwil\GK20902-PA 562 GK20902-PA 141..448 24..324 409 31.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24139-PA 368 GE24139-PA 25..368 21..364 1826 98.8 Plus
Dyak\GE12198-PA 429 GE12198-PA 137..425 24..306 397 31.6 Plus