Clone GH19261 Report

Search the DGRC for GH19261

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:192
Well:61
Vector:pOT2
Associated Gene/Transcriptrush-RA
Protein status:GH19261.pep: gold
Sequenced Size:2708

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11875 2002-01-01 Sim4 clustering to Release 2
CG14782 2002-05-18 Blastp of sequenced clone
CG14782 2003-01-01 Sim4 clustering to Release 3
CG11875 2003-01-01 Sim4 clustering to Release 3
CG14782 2008-04-29 Release 5.5 accounting
CG14782 2008-08-15 Release 5.9 accounting
RpS27 2008-08-15 Release 5.9 accounting
RpS27 2008-12-18 5.12 accounting
CG14782 2008-12-18 5.12 accounting

Clone Sequence Records

GH19261.complete Sequence

2708 bp (2708 high quality bases) assembled on 2002-05-18

GenBank Submission: BT003610

> GH19261.complete
AGAGCCTATGAAACATTCTTTATTGTTGTGAAGTTAATCAATGGTTAGAT
CTAAGCATAACTAGTGAAAAATTCCTGAAGTTTTGCCGCACAAGGGTATT
TGCACACACAAGAGCTTCCATTATGGGCGGTTTCTTATCGGGGAACCCCA
GCGATTGAGCTCCACTATCTATCCTGTTGGCAATTATCCACTTTCTATAA
ACAAATACGACAAGAACTGTTTTTTTTTTCACTTAGCCGACCACAACATC
GTTAATTCTTTAATTCACAAAGCACAATGAACCAAAGGACCGCAGCAATT
GAATTACAAGCTTTCTCTCGTATGGGTTCTGTGGTTTCTTTACGTTTTAG
AGTTTTTATTAAAAAATTAATAATTTGTGGTTCATCGCGAGTCCCATTTT
ACTGTGGCTTCCTGCGGAAGGAGCAGCCTTCTGTCAGCTTGGCGCGTCCT
CCAGTCGGCTGGCACAAAATGGTAGCGCATCCAGCGCAGACCACGACGCC
TTGGGCGTGGCTGAAGACGGTGGTGATCCTGTAGCAGCCGGGGCACTTCA
CGTCCATGAAGTACGAGTTGGGGTGCTGGACCAGGCGCTTCAGCTTGTGC
TTGCGCTTCTCCTCGGCGGGCAGAGGGTGCAGAAGATCTTTTGCTAGCGG
CATGTTTTTTGCCAGCCCCAAAACCTCTCCTGTGCCCAAACACGAGACCC
AAATTCAAGGGCCGTACGGCAACTATCCAAGAACGCCCCAGTTCTCCAGT
GCAGCAGCCCCAGGTCGGGAATCCGACGCTCGACAAACAATAACACGGGC
GGTGGGCAGAGCGAGACGGAGCGAGCTCAGTTTGTTTTTGTTGCTGTGGT
GTGAGTGAGTCATGACGTTTCGGACGGCGTAGAAAAGCCAGTTACAGTCA
ACCGTCGAACATTGCATAAAGCGGGAGCTGTTGCCCTGCATTCCGGAACC
AGGATCCGCCAGTCGCCCCACTTCCTCACCGTTTGCCAGGACCTGCAACA
GCTGCGCCCAGTCCGCACACACCGAAGCACGCACGTACACACACACACAC
ATTTCTGGAGGAGCTGTGGCACCGAGTGTCACACCATACACACACGGCGC
GAGCGCACGCACACCACTGCAGCAGGCAGTCTGTCGTCACAGTTGGCTAC
ATTTCGACTCGGATTCGGACTCGGATCGAGCTAGCTGAGCAGCAACTTTC
GCCGCACTCGAATCGAAGTTAAGCCCAAACCAAAAGCAAAAGCCAAACCC
AAGCCGAGCCCAAGCGCCTATTATCGTCATGGTGGACCGTCTGGTCAACT
CGGAGGCCAACACGCGCCGCATCGCCTCCGTGGAGAACTGCTTCGGGAGC
TCGGGCGTGCCGCTGGCGATGCAAGGTCGCGTTCTGGTGGGCGAGGGCGT
GCTGACCAAGATGTGTCGCAAGCGGCCCAAGTCGCGCCAGTTCTTCCTGT
TCAACGACATCCTGGTGTACGGAAACATAGTGATTGGCAAGAAGAAGTAC
AACAAGCAGCATATCATGCCGCTGGAGGAGGTCTCGCTGGAATCGATTGC
CGACAACCAGACGTACAGAAACGGCTGGTACATCCGCACCACCACCAAGT
CGTTTGTGGTGTTTGCGGCCACCAGCACCGAGAAGCAGGAGTGGATGGCT
CACATCAACAAGTGCGTGGAGGACCTGCTGCGCAAGAGCGGCAAGAAGCC
GGTGGAGAACCACGCCGCCGTTTGGGTGCCCGACACCGACGCCAGCGTCT
GCATGCACTGCAAGAAGACGCAGTTTACTTTCATCCAGCGCCGGCATCAC
TGCCGCAACTGCGGCGCTGTTGTCTGCGCCGGCTGCTCGGCCAAGAAGTT
CCTGCTTCCGCAGCAGAGCACCAAGGCGTTGCGCGTCTGTGACGCCTGCT
ACGAGCGCTTGAAGCACGTGCCAAGTTCCCTTGGCTCTGGCGAGGACTCG
GCAGCGGCTACCGGCGCTGCCTCCGGCAACAAGCTCAACACAACAGCCGG
CGACAGCTCCAACGATGAGGACTCCGACGAGGAGACTGCCTCCCCTGGTG
GCGAGTCGCACGATGAGCCGCGCTTCTACGGGGACAACAGCGTGCTATCC
GCCGTCGAAGACTCCTCGACGATAACCTCGCCCTCCTCCGCCACCACTGG
CAGCTTGGAGGCTCCCCAGGTGACACCGAGCGTCCAAAGCTCCCCGGCTG
CCGTTGCGACGACGGGCAGCCACTGTTGAACGGACCACATAGCGAATGAT
TATGATTATGCAAGACGAACAACGGAAGCGATGCGAGCAGGAGGAGATTA
AGGAGCTGCGCAAGATGACGGCATTCAAGGCTCGTCCGAATCCATTTAAA
TAGTGCTCGACGGAACCAATCGACTACCAAACGTTTGATAGCCCTGTCCA
AATTTAAATGAAGTGAAGTCGATGCTACACATAATCGTGTTTACCGATGC
ATAGTTTTACCAGATTAACACAATTTTTGTCTCTTAACATTAACATTACT
TTTACGCATATATCGTTCCCGTTTTTGGCGGATAAGAACCACTAAAATCG
TATGTTTGGCGAGAGGATAAACTATATGGATATGTATACAACATAAGCAA
TTTGCAATTGCGATCATTAACTGTTTTCTATTTGTACAAAGCCCAAAAAA
CAATAAATTAATACTGTAAATTGAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA

GH19261.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG14782-RA 2311 CG14782-RA 104..2119 660..2675 10080 100 Plus
RpS27-RA 980 RpS27-RA 168..827 660..1 3300 100 Minus
RpS27.a 703 RpS27.a 288..700 413..1 2065 100 Minus
RpS27.a 703 RpS27.a 57..290 660..427 1170 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1372515..1374115 660..2260 7945 99.8 Plus
chr3R 27901430 chr3R 21069039..21069467 1..429 2145 100 Plus
chrX 22417052 chrX 1374902..1375315 2260..2673 2055 99.8 Plus
chr3R 27901430 chr3R 21069531..21069756 427..652 1115 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:59:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1478620..1480220 660..2260 8005 100 Plus
3R 32079331 3R 25245955..25246383 1..429 2145 100 Plus
X 23542271 X 1481007..1481422 2260..2675 2080 100 Plus
3R 32079331 3R 25246447..25246672 427..652 1115 99.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1486718..1488318 660..2260 8005 100 Plus
3R 31820162 3R 24986786..24987214 1..429 2145 100 Plus
X 23527363 X 1489105..1489520 2260..2675 2080 100 Plus
3R 31820162 3R 24987278..24987503 427..652 1115 99.5 Plus
Blast to na_te.dros performed on 2019-03-16 23:48:41 has no hits.

GH19261.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:49:40 Download gff for GH19261.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1372505..1374115 651..2260 99 -> Plus
chrX 1374903..1375315 2261..2673 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:48:59 Download gff for GH19261.complete
Subject Subject Range Query Range Percent Splice Strand
CG14782-RA 1..951 1279..2229 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:46:14 Download gff for GH19261.complete
Subject Subject Range Query Range Percent Splice Strand
CG14782-RA 1..951 1279..2229 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:50:39 Download gff for GH19261.complete
Subject Subject Range Query Range Percent Splice Strand
rush-RA 1..951 1279..2229 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:38:32 Download gff for GH19261.complete
Subject Subject Range Query Range Percent Splice Strand
CG14782-RA 1..951 1279..2229 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:00:20 Download gff for GH19261.complete
Subject Subject Range Query Range Percent Splice Strand
rush-RA 1..951 1279..2229 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:21:49 Download gff for GH19261.complete
Subject Subject Range Query Range Percent Splice Strand
CG14782-RA 59..2082 651..2673 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:46:14 Download gff for GH19261.complete
Subject Subject Range Query Range Percent Splice Strand
CG14782-RA 59..2082 651..2673 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:39 Download gff for GH19261.complete
Subject Subject Range Query Range Percent Splice Strand
rush-RA 59..2082 651..2673 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:38:32 Download gff for GH19261.complete
Subject Subject Range Query Range Percent Splice Strand
CG14782-RA 59..2082 651..2673 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:00:20 Download gff for GH19261.complete
Subject Subject Range Query Range Percent Splice Strand
rush-RA 59..2082 651..2673 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:49:40 Download gff for GH19261.complete
Subject Subject Range Query Range Percent Splice Strand
X 1478610..1480220 651..2260 99 -> Plus
X 1481008..1481420 2261..2673 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:49:40 Download gff for GH19261.complete
Subject Subject Range Query Range Percent Splice Strand
X 1478610..1480220 651..2260 99 -> Plus
X 1481008..1481420 2261..2673 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:49:40 Download gff for GH19261.complete
Subject Subject Range Query Range Percent Splice Strand
X 1478610..1480220 651..2260 99 -> Plus
X 1481008..1481420 2261..2673 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:39 Download gff for GH19261.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1372643..1374253 651..2260 99 -> Plus
arm_X 1375041..1375453 2261..2673 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:10:52 Download gff for GH19261.complete
Subject Subject Range Query Range Percent Splice Strand
X 1486708..1488318 651..2260 99 -> Plus
X 1489106..1489518 2261..2673 100   Plus

GH19261.pep Sequence

Translation from 1278 to 2228

> GH19261.pep
MVDRLVNSEANTRRIASVENCFGSSGVPLAMQGRVLVGEGVLTKMCRKRP
KSRQFFLFNDILVYGNIVIGKKKYNKQHIMPLEEVSLESIADNQTYRNGW
YIRTTTKSFVVFAATSTEKQEWMAHINKCVEDLLRKSGKKPVENHAAVWV
PDTDASVCMHCKKTQFTFIQRRHHCRNCGAVVCAGCSAKKFLLPQQSTKA
LRVCDACYERLKHVPSSLGSGEDSAAATGAASGNKLNTTAGDSSNDEDSD
EETASPGGESHDEPRFYGDNSVLSAVEDSSTITSPSSATTGSLEAPQVTP
SVQSSPAAVATTGSHC*

GH19261.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20914-PA 325 GF20914-PA 1..278 1..280 1421 93.9 Plus
Dana\GF22946-PA 985 GF22946-PA 901..962 149..210 180 54 Plus
Dana\GF12817-PA 1347 GF12817-PA 533..592 148..208 177 49.2 Plus
Dana\GF13888-PA 763 GF13888-PA 160..227 154..221 165 44.9 Plus
Dana\GF18724-PA 228 GF18724-PA 163..226 147..208 146 41.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12863-PA 327 GG12863-PA 1..297 1..297 1589 98.7 Plus
Dere\GG12136-PA 981 GG12136-PA 898..966 149..219 180 50 Plus
Dere\GG22114-PA 1349 GG22114-PA 534..612 148..230 178 41 Plus
Dere\GG24878-PA 762 GG24878-PA 160..225 154..221 164 49.3 Plus
Dere\GG12131-PA 226 GG12131-PA 161..223 148..208 147 40.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17951-PA 321 GH17951-PA 1..315 1..305 1186 75.2 Plus
Dgri\GH18624-PA 1115 GH18624-PA 1022..1083 149..210 180 52.4 Plus
Dgri\GH21833-PA 1483 GH21833-PA 635..694 148..208 171 45.9 Plus
Dgri\GH11165-PA 738 GH11165-PA 160..242 154..239 164 39.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
rush-PB 316 CG14782-PB 1..316 1..316 1655 100 Plus
rush-PA 316 CG14782-PA 1..316 1..316 1655 100 Plus
CG6051-PD 988 CG6051-PD 905..973 149..219 171 50 Plus
CG6051-PC 989 CG6051-PC 906..974 149..219 171 50 Plus
CG6051-PB 989 CG6051-PB 906..974 149..219 171 50 Plus
Sara-PA 1343 CG15667-PA 527..606 148..231 170 41.7 Plus
Hrs-PA 647 CG2903-PA 47..179 154..308 166 29.9 Plus
Hrs-PC 760 CG2903-PC 160..292 154..308 166 29.9 Plus
Hrs-PB 760 CG2903-PB 160..292 154..308 166 29.9 Plus
CG5270-PB 2243 CG5270-PB 1441..1500 149..207 158 43.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16489-PA 328 GI16489-PA 1..272 1..280 1225 81.2 Plus
Dmoj\GI24295-PA 1051 GI24295-PA 962..1043 149..232 182 47.1 Plus
Dmoj\GI19076-PA 1347 GI19076-PA 519..601 148..231 171 39.3 Plus
Dmoj\GI17877-PA 750 GI17877-PA 160..231 154..225 161 43.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14261-PA 310 GL14261-PA 1..310 1..316 1335 81 Plus
Dper\GL23610-PA 1009 GL23610-PA 914..975 149..210 177 54 Plus
Dper\GL16978-PA 1352 GL16978-PA 537..615 148..227 175 42.5 Plus
Dper\GL26577-PA 765 GL26577-PA 159..214 153..208 162 49.1 Plus
Dper\GL23056-PA 260 GL23056-PA 195..257 148..208 149 42.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13242-PA 310 GA13242-PA 1..310 1..316 1330 80.7 Plus
Dpse\GA19323-PB 1007 GA19323-PB 912..980 149..217 182 52.9 Plus
Dpse\GA13882-PB 1310 GA13882-PB 495..577 148..231 177 41.7 Plus
Dpse\GA15506-PA 748 GA15506-PA 159..217 153..211 161 48.3 Plus
Dpse\GA30046-PC 732 GA30046-PC 667..729 148..208 154 42.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19146-PA 316 GM19146-PA 1..316 1..316 1689 98.7 Plus
Dsec\GM10129-PA 975 GM10129-PA 892..960 149..219 180 50 Plus
Dsec\GM15837-PA 1345 GM15837-PA 529..608 148..231 179 41.7 Plus
Dsec\GM18359-PA 747 GM18359-PA 160..232 154..235 168 45.8 Plus
Dsec\GM10123-PA 284 GM10123-PA 219..281 148..208 147 40.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18091-PA 820 GD18091-PA 737..805 149..219 180 50 Plus
Dsim\GD11597-PA 1345 GD11597-PA 529..608 148..231 179 41.7 Plus
Dsim\GD23175-PA 759 GD23175-PA 160..232 154..235 168 45.8 Plus
Dsim\GD18085-PA 493 GD18085-PA 428..490 148..208 150 40.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16034-PA 298 GJ16034-PA 1..277 1..279 1286 84.2 Plus
Dvir\GJ23073-PA 1052 GJ23073-PA 969..1052 149..234 182 46 Plus
Dvir\GJ20050-PA 1344 GJ20050-PA 528..587 148..208 170 45.9 Plus
Dvir\GJ17377-PA 734 GJ17377-PA 160..218 154..212 160 48.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16096-PA 330 GK16096-PA 1..285 1..280 1297 83 Plus
Dwil\GK22512-PA 993 GK22512-PA 902..963 149..210 180 54 Plus
Dwil\GK20901-PA 1323 GK20901-PA 497..556 148..208 172 47.5 Plus
Dwil\GK24576-PA 738 GK24576-PA 160..218 154..212 163 48.3 Plus
Dwil\GK22600-PA 219 GK22600-PA 154..216 148..208 147 42.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16694-PA 316 GE16694-PA 1..316 1..316 1674 98.1 Plus
Dyak\GE12197-PA 1348 GE12197-PA 532..611 148..231 180 41.7 Plus
Dyak\GE10583-PA 984 GE10583-PA 901..969 149..219 180 50 Plus
Dyak\GE18175-PA 765 GE18175-PA 160..231 154..230 170 48.7 Plus

GH19261.hyp Sequence

Translation from 1278 to 2228

> GH19261.hyp
MVDRLVNSEANTRRIASVENCFGSSGVPLAMQGRVLVGEGVLTKMCRKRP
KSRQFFLFNDILVYGNIVIGKKKYNKQHIMPLEEVSLESIADNQTYRNGW
YIRTTTKSFVVFAATSTEKQEWMAHINKCVEDLLRKSGKKPVENHAAVWV
PDTDASVCMHCKKTQFTFIQRRHHCRNCGAVVCAGCSAKKFLLPQQSTKA
LRVCDACYERLKHVPSSLGSGEDSAAATGAASGNKLNTTAGDSSNDEDSD
EETASPGGESHDEPRFYGDNSVLSAVEDSSTITSPSSATTGSLEAPQVTP
SVQSSPAAVATTGSHC*

GH19261.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
rush-PB 316 CG14782-PB 1..316 1..316 1655 100 Plus
rush-PA 316 CG14782-PA 1..316 1..316 1655 100 Plus
CG6051-PD 988 CG6051-PD 905..973 149..219 171 50 Plus
CG6051-PC 989 CG6051-PC 906..974 149..219 171 50 Plus
CG6051-PB 989 CG6051-PB 906..974 149..219 171 50 Plus