Clone GH19412 Report

Search the DGRC for GH19412

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:194
Well:12
Vector:pOT2
Associated Gene/TranscriptCG4300-RA
Protein status:GH19412.pep: gold
Sequenced Size:1987

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4300 2002-11-11 Blastp of sequenced clone
CG4300 2003-01-01 Sim4 clustering to Release 3
CG4300 2008-04-29 Release 5.5 accounting
CG4300 2008-08-15 Release 5.9 accounting
CG4300 2008-12-18 5.12 accounting

Clone Sequence Records

GH19412.complete Sequence

1987 bp (1987 high quality bases) assembled on 2002-11-11

GenBank Submission: BT001432

> GH19412.complete
TCGGTACGCGGTTCAGCGTTTTTGTTCAACGGATTAGCGCAAGTTAAGCA
CGATGGCGGCCCAGACGATACTGTTTGATTTCACGCTGGACAAGGACAAG
ACGGCGGATGAGGAGGCGCGCCTCCAGGTGGCCAAAATCCTGCGTAACGA
GCTGGAGCAGCTGTTCCCCCAGCTGGAGCTGGCCTACTCGATGGAGTCGC
CGGAAAACGGCTACTTTGCGGTGCTGCACGAGAACAAGGACACGGTGATT
ACCTGCCGCATCTTCCAGCACGGCCTGCTGACGCTCAACGTGGAGTACTT
CCTGCCCGATGGCAAGGAGCCGAGCATATCCTTCGACACCATGCGCACCA
TGGAACTGATTTTGCGGCAGAAATTTGATTCCGATCGGTCCAAGTACTTG
CCGCCGATTAAACGCGGCGGATATATCGACATATATATGACTAGCTCAGA
TGAGCGCATCATCGAGTACGACATCGACAAGGTGGTCTTCGAGGCGCGCT
CGCCCTTCCAGAAGATTCAAATCATGCACTCCAAGACCCTGGGCAACATG
CTGCTCCTCGACGAGCTGCAGAACATTGCTGAATCCGATTTGATTTACAC
GGAGACCCTGATGTGTCGCGGCGTGGAGAACTACGAGGGCAAGGAGATCT
GCATCCTGGGCGGCGGTGATGGCGCCTTGTTGTACGAGCTACTCAAGGAG
AATCCGAAGCATGTGGTGATGCTGGAGATCGATGAGCTTGTGATGCAAAC
CTGCAACAAATACCTCAACGTGATCTGCGGCGATGTGCTGGAGAAACGCA
AGGGCGATCAGTACGAGATCATTGTGGGCGACTGTGTGGAGTACTTGAAG
AAGTTCATCGCCGAGGGCCGCAAGTTCGACTACGTTTTTGGGGATCTTAC
GGACATACCCATAACCGATGCCCCGGAGGGCGAGACCTGGGATTTCATTC
GTACCATCTTCGAGCACTCCTTCAAGGTGCTGAAACCCGACGGAAAGTAT
TTGACTCATGGCAATGGGTCCACCTGCAAGGTGCAGCTGCGTCTATTCGA
GGAGCAGTTGAATTTGCTGCGTCCCAAGGTGAAGTTCACCACCACCAAGG
CGTTTGTGCCGTCGTTCATGGAAGAGTGGCTCTTCTACCAAGTGACTTTC
GCCTGACAAGCTCAGGTGGACTCCTCAGCAGCAGCAGTAGCTACTTCTAG
CGCACCACCAACCGCCAGTCACACACCAGCATCACACAGCATAAGTCAGG
AACCGGGAACCGTCGGAGAGATGCTCCAGCTGCACTCCTACACTGTCACT
ATCCATGGAGCAGCAGTCGGAGTTCAGGAGGAGGAAAATATGAATAATGG
AGCCGTGGGTCAATTGAAACCGCGACCAAGGCGTCGAAAGAAGAAGCGTG
TACACTACCATCACACGCTGGTTTCTTAGTCCAGGAAACACGGAATCCGA
TGCACAAGCTAATCGCCATCATCGAAACCATCGCAACAAAACCCAAGACA
GAGGAAAACACGCACTTCCAATGGCTGTTACTTACAATTGAAAACCAAAC
CAAATACTGAACCCAATTCGTTTACGCTTAAGTTAGGCTTTAGTTCCGTT
TCTCGTTCACTGATTTCAATGCTAAAAACTAAGACAAAAGTACAACCTTT
AAGCAAGGACAGGCTAAAATAATAACTTATGTATTCGTGTTTATTTGAAT
TACGCCTAAGCATAGCATGTTGGCCAACTATTTGTAATATTTCGTATAAC
GTGTACATCTATATAATGTAGACCATATGTTTAGTTATCCATTAACAAGC
AAAGTGGAGCGGGGAAGGCCCAAGGATCGAGGATGTGTGTATGTGGGTGT
GAGGAAGCGTAGCAGGAACACCAACTTTTATTGCTGTAATAACGATTAAT
ACCAAACATTTTAAACGGGAGAACTAATAAAGTTAAATAAATAGTCGTAC
GCAGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH19412.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4300-RA 2083 CG4300-RA 76..2036 1..1961 9805 100 Plus
CG4300-RB 2080 CG4300-RB 518..2033 446..1961 7580 100 Plus
CG4300.a 1929 CG4300.a 494..1882 573..1961 6945 100 Plus
CG4300-RB 2080 CG4300-RB 76..413 1..338 1690 100 Plus
CG4300.a 1929 CG4300.a 48..385 1..338 1690 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 12262308..12263693 1958..573 6840 99.6 Minus
chr3L 24539361 chr3L 12267542..12267878 337..1 1655 99.4 Minus
chr3L 24539361 chr3L 12264149..12264272 570..447 590 98.4 Minus
chr3L 24539361 chr3L 12265726..12265837 449..338 560 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:59:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12271653..12273041 1961..573 6945 100 Minus
3L 28110227 3L 12276890..12277226 337..1 1685 100 Minus
3L 28110227 3L 12273498..12273623 572..447 630 100 Minus
3L 28110227 3L 12275076..12275187 449..338 560 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:09:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 12264753..12266141 1961..573 6945 100 Minus
3L 28103327 3L 12269990..12270326 337..1 1685 100 Minus
3L 28103327 3L 12266598..12266723 572..447 630 100 Minus
3L 28103327 3L 12268176..12268287 449..338 560 100 Minus
Blast to na_te.dros performed 2019-03-16 02:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2349..2424 1176..1253 123 72 Plus

GH19412.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:03:47 Download gff for GH19412.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 12262308..12263693 573..1958 99 <- Minus
chr3L 12264147..12264269 450..572 97 <- Minus
chr3L 12265726..12265837 338..449 100 <- Minus
chr3L 12267542..12267878 1..337 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:49:11 Download gff for GH19412.complete
Subject Subject Range Query Range Percent Splice Strand
CG4300-RA 1..1104 53..1156 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:06:02 Download gff for GH19412.complete
Subject Subject Range Query Range Percent Splice Strand
CG4300-RA 1..1104 53..1156 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:14:21 Download gff for GH19412.complete
Subject Subject Range Query Range Percent Splice Strand
CG4300-RA 1..1104 53..1156 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:55:53 Download gff for GH19412.complete
Subject Subject Range Query Range Percent Splice Strand
CG4300-RA 1..1104 53..1156 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:56:27 Download gff for GH19412.complete
Subject Subject Range Query Range Percent Splice Strand
CG4300-RD 1..1377 53..1429 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:25:31 Download gff for GH19412.complete
Subject Subject Range Query Range Percent Splice Strand
CG4300-RA 41..1998 1..1958 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:06:02 Download gff for GH19412.complete
Subject Subject Range Query Range Percent Splice Strand
CG4300-RA 41..1998 1..1958 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:14:21 Download gff for GH19412.complete
Subject Subject Range Query Range Percent Splice Strand
CG4300-RA 26..1983 1..1958 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:55:54 Download gff for GH19412.complete
Subject Subject Range Query Range Percent Splice Strand
CG4300-RA 41..1998 1..1958 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:56:27 Download gff for GH19412.complete
Subject Subject Range Query Range Percent Splice Strand
CG4300-RA 26..1983 1..1958 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:03:47 Download gff for GH19412.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12273498..12273620 450..572 100 <- Minus
3L 12275076..12275187 338..449 100 <- Minus
3L 12276890..12277226 1..337 100   Minus
3L 12271656..12273041 573..1958 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:03:47 Download gff for GH19412.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12273498..12273620 450..572 100 <- Minus
3L 12275076..12275187 338..449 100 <- Minus
3L 12276890..12277226 1..337 100   Minus
3L 12271656..12273041 573..1958 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:03:47 Download gff for GH19412.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12273498..12273620 450..572 100 <- Minus
3L 12275076..12275187 338..449 100 <- Minus
3L 12276890..12277226 1..337 100   Minus
3L 12271656..12273041 573..1958 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:14:21 Download gff for GH19412.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12264756..12266141 573..1958 100 <- Minus
arm_3L 12266598..12266720 450..572 100 <- Minus
arm_3L 12268176..12268287 338..449 100 <- Minus
arm_3L 12269990..12270326 1..337 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:28:19 Download gff for GH19412.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12264756..12266141 573..1958 100 <- Minus
3L 12266598..12266720 450..572 100 <- Minus
3L 12268176..12268287 338..449 100 <- Minus
3L 12269990..12270326 1..337 100   Minus

GH19412.hyp Sequence

Translation from 52 to 1155

> GH19412.hyp
MAAQTILFDFTLDKDKTADEEARLQVAKILRNELEQLFPQLELAYSMESP
ENGYFAVLHENKDTVITCRIFQHGLLTLNVEYFLPDGKEPSISFDTMRTM
ELILRQKFDSDRSKYLPPIKRGGYIDIYMTSSDERIIEYDIDKVVFEARS
PFQKIQIMHSKTLGNMLLLDELQNIAESDLIYTETLMCRGVENYEGKEIC
ILGGGDGALLYELLKENPKHVVMLEIDELVMQTCNKYLNVICGDVLEKRK
GDQYEIIVGDCVEYLKKFIAEGRKFDYVFGDLTDIPITDAPEGETWDFIR
TIFEHSFKVLKPDGKYLTHGNGSTCKVQLRLFEEQLNLLRPKVKFTTTKA
FVPSFMEEWLFYQVTFA*

GH19412.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4300-PA 367 CG4300-PA 1..367 1..367 1915 100 Plus
CG4300-PD 458 CG4300-PD 1..367 1..367 1915 100 Plus
CG4300-PB 366 CG4300-PB 1..366 1..367 1766 92.9 Plus
CG4300-PC 457 CG4300-PC 1..366 1..367 1766 92.9 Plus
SpdS-PC 287 CG8327-PC 26..196 141..320 156 30.5 Plus

GH19412.pep Sequence

Translation from 52 to 1155

> GH19412.pep
MAAQTILFDFTLDKDKTADEEARLQVAKILRNELEQLFPQLELAYSMESP
ENGYFAVLHENKDTVITCRIFQHGLLTLNVEYFLPDGKEPSISFDTMRTM
ELILRQKFDSDRSKYLPPIKRGGYIDIYMTSSDERIIEYDIDKVVFEARS
PFQKIQIMHSKTLGNMLLLDELQNIAESDLIYTETLMCRGVENYEGKEIC
ILGGGDGALLYELLKENPKHVVMLEIDELVMQTCNKYLNVICGDVLEKRK
GDQYEIIVGDCVEYLKKFIAEGRKFDYVFGDLTDIPITDAPEGETWDFIR
TIFEHSFKVLKPDGKYLTHGNGSTCKVQLRLFEEQLNLLRPKVKFTTTKA
FVPSFMEEWLFYQVTFA*

GH19412.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24990-PA 367 GF24990-PA 1..367 1..367 1820 92.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13840-PA 367 GG13840-PA 1..367 1..367 1923 98.6 Plus
Dere\GG16982-PA 287 GG16982-PA 26..197 141..321 149 31.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16076-PA 367 GH16076-PA 1..367 1..367 1677 84.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
Sms-PD 458 CG4300-PD 1..367 1..367 1915 100 Plus
Sms-PA 367 CG4300-PA 1..367 1..367 1915 100 Plus
Sms-PC 457 CG4300-PC 1..366 1..367 1766 92.9 Plus
Sms-PB 366 CG4300-PB 1..366 1..367 1766 92.9 Plus
SpdS-PC 287 CG8327-PC 26..196 141..320 156 30.5 Plus
SpdS-PA 287 CG8327-PA 26..196 141..320 156 30.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12338-PA 454 GI12338-PA 1..363 1..363 1677 85.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25003-PA 367 GL25003-PA 1..367 1..367 1749 88 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18092-PA 367 GA18092-PA 1..367 1..367 1749 88 Plus
Dpse\GA18092-PB 369 GA18092-PB 1..369 1..367 1586 80.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24668-PA 367 GM24668-PA 1..367 1..367 1946 99.5 Plus
Dsec\GM23823-PA 287 GM23823-PA 26..197 141..321 151 31.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12732-PA 420 GD12732-PA 1..420 1..367 1886 87.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12230-PA 367 GJ12230-PA 1..367 1..367 1714 86.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12827-PA 433 GK12827-PA 1..315 1..315 1527 89.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20131-PA 467 GE20131-PA 1..467 1..367 1733 75.6 Plus
Dyak\GE25970-PA 287 GE25970-PA 26..197 141..321 151 31.2 Plus