Clone GH19483 Report

Search the DGRC for GH19483

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:194
Well:83
Vector:pOT2
Associated Gene/TranscriptCG9581-RA
Protein status:GH19483.pep: gold
Preliminary Size:2003
Sequenced Size:1900

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9581 2001-01-01 Release 2 assignment
CG9581 2001-11-08 Blastp of sequenced clone
CG9581 2003-01-01 Sim4 clustering to Release 3
CG9581 2008-04-29 Release 5.5 accounting
CG9581 2008-08-15 Release 5.9 accounting
CG9581 2008-12-18 5.12 accounting

Clone Sequence Records

GH19483.complete Sequence

1900 bp (1900 high quality bases) assembled on 2001-11-08

GenBank Submission: AY069164

> GH19483.complete
TTAAGCAATCGTCTGGCAACCCATGTGTTTTGTTTTTATCCAGGATCGTT
AGTGTTTTTAACAGTTCCGTTTTCTGATGTGTATAATATTGTGAAGATTT
TAGTTGGCAACCCAAGAACCGGAACCGGCAGCACGATGAATATCCTAAGG
CGCCTGGACCGCCTGATCGCTCCCACCGTCCGCCGCAGCGCCGCCATTTC
CACCAGCCTGTGGCCACACCGCTGGATGAGCCAGTCCACCACGATCTCCC
CAGGAAGTCCCAGCAGCAAATCGACAGTAAACGCGGCCGAGGTGCGTGGC
GTGGCTCAGATTCTGCGCCAGCAAAAGGGAAACCTGGGACAGCCCACCAG
CGTCTCGCATCCACATCTTATCCAGCCGGACGAGCTGGTTCCGGGCGTGG
AGCTGACCGAGATCAAGGAACGCCGTTCGCAGCTGATGCAAAACATCCGC
GCCTATGCACGCAGTTTCGGCGGCGAGTTCAATGGGCACTCGAGTTCTTG
TCACATGCTCGTTCTGGGCGCCGCCTCCAAGAAGTATATGAGCGGCAAGA
TCCCGTACGTGTTCCGCCAGAACTCGGACTTCTACTACCTAACTGGCTGC
CTAGAGCCGGACGCCGTGCTACTGCTGACCATCGACGAGGCCCAGAACGT
GCAGTCCGAGCTGTTTATGCGTCCCAAGGACCCGCATGCCGAGCTGTGGG
ATGGTCCGCGCACTGGGCCCGAGCTCGCGGTGCCGCTTTTCGGAGTCACT
GAGGCCCATCCGCTGTCCCAGCTGGAGGCGGTGCTGGCCAAGCGCGCAGG
CGCCCTAAAACCACACATCTGGTTCGATCAGAAGAGCACCGACCTGCCGT
CCCTGGCGGAGAACATGCTGCGATTGAGCGGCAATCAGCAGCGTCCGCTG
CTGCCGGCCTACACTTTCCTAGAAGCCATGCGCCTGCTTAAGTCCCGCGA
CGAGATGCAGTTAATGCGGCGCACCTGCGACATAGCCTCACGCTCGTTCA
ACGAAGTGATGGCCGAGACCCGGCCAGGTCAGTCGGAGCACCATCTGTTC
GCCGCGATTGACTACAAGTGCCGCATGCGCAACGCCAGCTACCTGGCCTA
CCCGCCGGTGGTGGCTGCCGGTAAAAACGCCACGGTGATCCACTACGTGG
CCAACAGCCAGTTGTTGGGTCAGCAGGATCTCGTGCTGATGGACGCCGGC
TGCGAGTATGGCGGCTACACCAGCGACATCACACGCACCTGGCCGGCGAG
TGGGGTTTTCACGGAGCCGCAGCGCACACTGTACGACATGCTGCACCAGC
TGCAGGAGGAGATTATTGGCAACGTGATGAAGCCGGGCGGCGAGACGCTC
GACCAGCTGTTCGAGACCACCTGCTACAAGCTGGGCAAGTACTTGCAGGA
GATCGGGCTGGTGGGCAAGTCGTTCAGCGAGTACAAGGAACTGGTCAGCC
AGGGCTACCGCTTCTGTCCGCACCACGTCTCCCACTACCTTGGGATGGAC
GTGCACGACACACCGCACGTGCCACGCAACACACGCATCGTGCCCGGCAT
GGTCTTCACCGTTGAGCCGGGCATCTACATTGGCCAGGATTGCGGCGACG
TGCCGCCCGAGTTCCGGGGCATCGGCATCCGCATCGAAGACGATCTGCTC
ATCAACGAGAACGGCCACGTGGAAGTTCTAACTGAGGCGTGCGTCAAGGA
TCCACGCGCCCTGCAGGAGCTTTGCAAACAGCAACAGAAGAACCCCGGTG
CCTCATCCGCGGAGGCGTTTTAAGAGCTCACAACGAAAACCAAATTCCTA
GTCATAAGCCTTTCATTCTCCCGACAACCTTATGAGCTGATTTGGGTCCT
AAAGTAAAGGCAGATGCTGTATTTATAAATGCAAAAAAAAAAAAAAAAAA

GH19483.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9581.b 2049 CG9581.b 168..2049 1..1882 9410 100 Plus
CG9581-RA 1895 CG9581-RA 14..1895 1..1882 9410 100 Plus
CG9581.a 1848 CG9581.a 70..1848 104..1882 8895 100 Plus
CG9581.a 1848 CG9581.a 23..69 1..47 235 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 20056590..20057965 1882..507 6865 99.9 Minus
chrX 22417052 chrX 20058022..20058528 507..1 2535 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:59:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20168041..20169417 1883..507 6885 100 Minus
X 23542271 X 20169474..20169980 507..1 2535 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 20176139..20177515 1883..507 6885 100 Minus
X 23527363 X 20177572..20178078 507..1 2535 100 Minus
Blast to na_te.dros performed on 2019-03-16 23:53:58 has no hits.

GH19483.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:55:13 Download gff for GH19483.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 20056590..20057964 508..1882 99 <- Minus
chrX 20058022..20058528 1..507 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:49:15 Download gff for GH19483.complete
Subject Subject Range Query Range Percent Splice Strand
CG9581-RA 1..1638 136..1773 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:34:35 Download gff for GH19483.complete
Subject Subject Range Query Range Percent Splice Strand
CG9581-RA 1..1638 136..1773 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:52:37 Download gff for GH19483.complete
Subject Subject Range Query Range Percent Splice Strand
CG9581-RA 1..1638 136..1773 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:02:07 Download gff for GH19483.complete
Subject Subject Range Query Range Percent Splice Strand
CG9581-RA 1..1638 136..1773 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:02:49 Download gff for GH19483.complete
Subject Subject Range Query Range Percent Splice Strand
CG9581-RA 1..1638 136..1773 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:14:12 Download gff for GH19483.complete
Subject Subject Range Query Range Percent Splice Strand
CG9581-RA 1..1878 1..1878 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:34:35 Download gff for GH19483.complete
Subject Subject Range Query Range Percent Splice Strand
CG9581-RA 1..1882 1..1882 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:37 Download gff for GH19483.complete
Subject Subject Range Query Range Percent Splice Strand
CG9581-RA 2..1883 1..1882 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:02:07 Download gff for GH19483.complete
Subject Subject Range Query Range Percent Splice Strand
CG9581-RA 1..1878 1..1878 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:02:49 Download gff for GH19483.complete
Subject Subject Range Query Range Percent Splice Strand
CG9581-RA 2..1883 1..1882 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:55:13 Download gff for GH19483.complete
Subject Subject Range Query Range Percent Splice Strand
X 20168042..20169416 508..1882 100 <- Minus
X 20169474..20169980 1..507 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:55:13 Download gff for GH19483.complete
Subject Subject Range Query Range Percent Splice Strand
X 20168042..20169416 508..1882 100 <- Minus
X 20169474..20169980 1..507 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:55:13 Download gff for GH19483.complete
Subject Subject Range Query Range Percent Splice Strand
X 20168042..20169416 508..1882 100 <- Minus
X 20169474..20169980 1..507 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:37 Download gff for GH19483.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20062075..20063449 508..1882 100 <- Minus
arm_X 20063507..20064013 1..507 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:39:08 Download gff for GH19483.complete
Subject Subject Range Query Range Percent Splice Strand
X 20176140..20177514 508..1882 100 <- Minus
X 20177572..20178078 1..507 100   Minus

GH19483.hyp Sequence

Translation from 0 to 1772

> GH19483.hyp
LSNRLATHVFCFYPGSLVFLTVPFSDVYNIVKILVGNPRTGTGSTMNILR
RLDRLIAPTVRRSAAISTSLWPHRWMSQSTTISPGSPSSKSTVNAAEVRG
VAQILRQQKGNLGQPTSVSHPHLIQPDELVPGVELTEIKERRSQLMQNIR
AYARSFGGEFNGHSSSCHMLVLGAASKKYMSGKIPYVFRQNSDFYYLTGC
LEPDAVLLLTIDEAQNVQSELFMRPKDPHAELWDGPRTGPELAVPLFGVT
EAHPLSQLEAVLAKRAGALKPHIWFDQKSTDLPSLAENMLRLSGNQQRPL
LPAYTFLEAMRLLKSRDEMQLMRRTCDIASRSFNEVMAETRPGQSEHHLF
AAIDYKCRMRNASYLAYPPVVAAGKNATVIHYVANSQLLGQQDLVLMDAG
CEYGGYTSDITRTWPASGVFTEPQRTLYDMLHQLQEEIIGNVMKPGGETL
DQLFETTCYKLGKYLQEIGLVGKSFSEYKELVSQGYRFCPHHVSHYLGMD
VHDTPHVPRNTRIVPGMVFTVEPGIYIGQDCGDVPPEFRGIGIRIEDDLL
INENGHVEVLTEACVKDPRALQELCKQQQKNPGASSAEAF*

GH19483.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9581-PA 545 CG9581-PA 1..545 46..590 2862 100 Plus
CG32454-PA 534 CG32454-PA 89..501 137..575 365 28.1 Plus
Dip-C-PB 491 CG5663-PB 45..465 169..555 304 27.4 Plus
Dip-C-PA 491 CG5663-PA 45..465 169..555 304 27.4 Plus

GH19483.pep Sequence

Translation from 135 to 1772

> GH19483.pep
MNILRRLDRLIAPTVRRSAAISTSLWPHRWMSQSTTISPGSPSSKSTVNA
AEVRGVAQILRQQKGNLGQPTSVSHPHLIQPDELVPGVELTEIKERRSQL
MQNIRAYARSFGGEFNGHSSSCHMLVLGAASKKYMSGKIPYVFRQNSDFY
YLTGCLEPDAVLLLTIDEAQNVQSELFMRPKDPHAELWDGPRTGPELAVP
LFGVTEAHPLSQLEAVLAKRAGALKPHIWFDQKSTDLPSLAENMLRLSGN
QQRPLLPAYTFLEAMRLLKSRDEMQLMRRTCDIASRSFNEVMAETRPGQS
EHHLFAAIDYKCRMRNASYLAYPPVVAAGKNATVIHYVANSQLLGQQDLV
LMDAGCEYGGYTSDITRTWPASGVFTEPQRTLYDMLHQLQEEIIGNVMKP
GGETLDQLFETTCYKLGKYLQEIGLVGKSFSEYKELVSQGYRFCPHHVSH
YLGMDVHDTPHVPRNTRIVPGMVFTVEPGIYIGQDCGDVPPEFRGIGIRI
EDDLLINENGHVEVLTEACVKDPRALQELCKQQQKNPGASSAEAF*

GH19483.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20449-PA 543 GF20449-PA 51..538 48..535 2173 79.5 Plus
Dana\GF17046-PA 486 GF17046-PA 12..479 88..529 343 28.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18008-PA 545 GG18008-PA 1..545 1..545 2701 91.2 Plus
Dere\GG17129-PA 491 GG17129-PA 45..465 124..510 310 27.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:29:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12088-PA 516 GH12088-PA 40..516 56..531 1823 71.3 Plus
Dgri\GH17466-PA 486 GH17466-PA 45..479 124..529 343 27.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9581-PA 545 CG9581-PA 1..545 1..545 2862 100 Plus
CG32454-PA 534 CG32454-PA 89..501 92..530 365 28.1 Plus
Dip-C-PB 491 CG5663-PB 45..465 124..510 304 27.4 Plus
Dip-C-PA 491 CG5663-PA 45..465 124..510 304 27.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:29:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11096-PA 489 GI11096-PA 3..489 45..531 1892 70.4 Plus
Dmoj\GI22790-PA 486 GI22790-PA 39..479 120..529 338 27.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12918-PA 343 GL12918-PA 198..327 403..532 554 73.1 Plus
Dper\GL12918-PA 343 GL12918-PA 1..175 1..181 496 54.9 Plus
Dper\GL27178-PA 486 GL27178-PA 12..479 88..529 342 27.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21891-PA 542 GA21891-PA 1..538 1..544 1931 65.3 Plus
Dpse\GA19042-PA 486 GA19042-PA 12..479 88..529 345 27.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22688-PA 262 GM22688-PA 1..244 1..244 1281 97.1 Plus
Dsec\GM22689-PA 254 GM22689-PA 33..254 324..545 1179 96.8 Plus
Dsec\GM26012-PA 491 GM26012-PA 45..465 124..510 312 27 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20570-PA 469 GD20570-PA 35..443 112..510 283 26.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15780-PA 518 GJ15780-PA 32..518 45..531 1923 72.7 Plus
Dvir\GJ22793-PA 486 GJ22793-PA 45..479 124..529 347 27.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25597-PA 526 GK25597-PA 4..525 4..533 1998 69.8 Plus
Dwil\GK12846-PA 492 GK12846-PA 42..482 118..529 373 28.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17339-PA 545 GE17339-PA 1..545 1..545 2715 93.2 Plus
Dyak\GE24520-PA 490 GE24520-PA 35..464 112..510 318 27.5 Plus